Wall clock time and date at job start Tue Mar 31 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00282 * 2 1 4 4 C 1.52995 * 109.47598 * 124.99488 * 3 2 1 5 5 C 1.52997 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46921 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47255 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47448 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46862 * 305.00378 * 9 8 7 11 11 O 1.42905 * 109.46980 * 64.99505 * 9 8 7 12 12 C 1.52997 * 109.47482 * 184.99813 * 9 8 7 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 9 8 14 14 C 1.47477 * 111.00047 * 265.97286 * 13 12 9 15 15 C 1.53513 * 87.92932 * 221.29743 * 14 13 12 16 16 C 1.50700 * 114.34648 * 139.68711 * 15 14 13 17 17 H 1.08005 * 119.99583 * 266.07840 * 16 15 14 18 18 C 1.37877 * 120.00435 * 86.06645 * 16 15 14 19 19 N 1.31519 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00372 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46971 * 90.00308 * 20 18 16 22 22 H 1.48501 * 109.47027 * 210.00601 * 20 18 16 23 23 H 1.48504 * 109.46793 * 330.00285 * 20 18 16 24 24 C 1.47481 * 111.00017 * 169.99694 * 13 12 9 25 25 H 1.07999 * 120.00620 * 179.97438 * 1 2 3 26 26 H 1.08008 * 120.00005 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99439 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47119 * 4.99037 * 3 2 1 29 29 H 1.09003 * 109.46866 * 244.99936 * 3 2 1 30 30 H 1.09000 * 109.46984 * 60.00107 * 4 3 2 31 31 H 1.09004 * 109.46914 * 300.00395 * 4 3 2 32 32 H 1.09000 * 109.46818 * 60.00218 * 5 4 3 33 33 H 1.08994 * 109.47510 * 299.99977 * 5 4 3 34 34 H 1.09000 * 109.47312 * 60.00379 * 6 5 4 35 35 H 1.08998 * 109.47141 * 299.99499 * 6 5 4 36 36 H 1.09000 * 109.47044 * 59.99893 * 7 6 5 37 37 H 1.09007 * 109.46604 * 299.99771 * 7 6 5 38 38 H 1.09001 * 109.47166 * 59.99112 * 8 7 6 39 39 H 1.09004 * 109.46717 * 300.00064 * 8 7 6 40 40 H 0.96696 * 114.00036 * 60.00352 * 11 9 8 41 41 H 1.09002 * 109.47153 * 59.99783 * 12 9 8 42 42 H 1.09001 * 109.46832 * 299.99974 * 12 9 8 43 43 H 1.09000 * 113.47846 * 336.05901 * 14 13 12 44 44 H 1.08998 * 113.47506 * 106.53321 * 14 13 12 45 45 H 1.09005 * 114.16820 * 272.37471 * 15 14 13 46 46 H 0.96998 * 120.00145 * 179.97438 * 19 18 16 47 47 H 1.09000 * 113.47744 * 253.47034 * 24 13 12 48 48 H 1.08996 * 113.47276 * 23.88258 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7724 2.6856 2.3625 7 6 5.5375 4.0106 2.3625 8 6 6.5099 4.0382 3.5434 9 6 7.2753 5.3628 3.5430 10 1 7.7607 5.5017 2.5770 11 8 6.3650 6.4391 3.7777 12 6 8.3341 5.3404 4.6473 13 7 9.0694 6.6121 4.6465 14 6 10.2980 6.5117 3.8370 15 6 11.0167 7.3168 4.9287 16 6 12.4108 6.8361 5.2391 17 1 12.5734 6.1348 6.0442 18 6 13.4787 7.2914 4.4952 19 7 13.2807 8.1456 3.5150 20 14 15.2067 6.6950 4.8795 21 1 15.4959 5.4724 4.0877 22 1 16.1857 7.7551 4.5288 23 1 15.3121 6.3833 6.3277 24 6 9.9307 6.7253 5.8383 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6214 1.4025 -0.9314 30 1 3.7399 0.5066 1.0921 31 1 2.4771 1.2357 2.1130 32 1 3.0958 3.4846 1.2705 33 1 4.3584 2.7549 0.2499 34 1 5.4770 1.8588 2.2728 35 1 4.2149 2.5885 3.2941 36 1 4.8326 4.8372 2.4524 37 1 6.0950 4.1082 1.4309 38 1 7.2146 3.2116 3.4531 39 1 5.9526 3.9403 4.4751 40 1 5.8961 6.3808 4.6213 41 1 9.0284 4.5195 4.4684 42 1 7.8486 5.2016 5.6133 43 1 10.6686 5.4917 3.7348 44 1 10.2334 7.0350 2.8830 45 1 10.9525 8.3975 4.8016 46 1 14.0319 8.4662 2.9919 47 1 9.5548 7.4297 6.5804 48 1 10.2023 5.7624 6.2708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253228961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:40 Heat of formation + Delta-G solvation = -38.342735 kcal Electronic energy + Delta-G solvation = -21193.538353 eV Core-core repulsion = 18055.467483 eV Total energy + Delta-G solvation = -3138.070870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.15325 -37.60812 -36.78888 -34.84909 -32.72247 -32.32709 -30.53310 -28.61612 -26.45449 -24.79682 -24.64898 -22.81781 -21.39404 -21.08187 -20.83467 -20.03912 -18.57678 -16.74228 -16.41745 -16.02741 -15.65820 -15.25546 -14.88996 -14.63600 -14.32749 -14.17275 -13.86301 -13.70868 -13.22161 -13.08112 -12.85276 -12.28878 -12.02693 -11.89443 -11.73428 -11.59493 -11.46169 -11.31265 -11.14616 -10.99807 -10.93016 -10.78753 -10.65023 -10.60655 -10.53620 -10.22748 -10.04497 -9.69498 -9.37951 -9.13637 -8.90506 -8.43012 -7.91030 -6.04548 -4.09388 1.89836 3.28345 3.35544 3.38437 4.26561 4.39904 4.50831 4.59763 4.71172 4.78805 4.82219 4.97263 5.02204 5.08691 5.22237 5.23228 5.27475 5.34682 5.42501 5.48134 5.52405 5.57914 5.62229 5.68918 5.82050 5.83112 5.86730 5.90419 5.97722 6.05282 6.13022 6.17761 6.24750 6.31086 6.31493 6.39116 6.41301 6.50430 6.69559 6.77644 7.17245 7.21588 7.73737 7.91926 7.96727 8.13236 8.38614 8.93850 9.55491 11.04960 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034204 B = 0.002045 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.425784 B =13687.929071 C =14066.732055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.097 4.097 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.151 4.151 9 C 0.118 3.882 10 H 0.094 0.906 11 O -0.547 6.547 12 C -0.012 4.012 13 N -0.472 5.472 14 C 0.003 3.997 15 C 0.042 3.958 16 C -0.517 4.517 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.007 4.007 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.365 0.635 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.262 0.738 47 H 0.060 0.940 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.139 -13.908 -4.128 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.170 4.170 3 C -0.134 4.134 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.189 4.189 9 C 0.058 3.942 10 H 0.112 0.888 11 O -0.351 6.351 12 C -0.142 4.142 13 N -0.194 5.194 14 C -0.126 4.126 15 C 0.023 3.977 16 C -0.556 4.556 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.136 4.136 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.211 0.789 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.359 -13.118 -5.010 25.561 hybrid contribution 1.335 -1.477 0.826 2.155 sum -20.024 -14.594 -4.183 25.129 Atomic orbital electron populations 1.23860 0.96020 1.01785 1.01948 1.23019 0.96063 0.98689 0.99235 1.20812 0.98311 0.95176 0.99139 1.21553 0.97711 0.98023 0.97990 1.21621 0.98133 0.97204 0.98874 1.21618 0.97950 0.97952 0.98186 1.21518 0.98180 0.97298 0.98224 1.22313 0.98916 0.98730 0.98966 1.21809 0.88370 0.85111 0.98886 0.88791 1.86605 1.58377 1.48125 1.41987 1.23353 0.97945 0.94151 0.98706 1.68886 1.15512 1.27540 1.07496 1.24112 0.88967 0.99994 0.99502 1.20083 0.91570 0.96537 0.89556 1.21040 0.91211 1.26594 1.16705 0.92499 1.25025 0.99024 0.94590 0.94982 1.69975 1.31360 1.30994 1.19920 0.86618 0.84353 0.78450 0.78715 1.20695 1.21112 1.19839 1.24007 0.95390 0.99722 0.94483 0.88654 0.88635 0.87512 0.91536 0.90981 0.91942 0.91995 0.91966 0.91944 0.92205 0.92244 0.91338 0.92079 0.91359 0.91937 0.78937 0.93640 0.92001 0.93087 0.91850 0.91790 0.92863 0.92111 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 14.32 29.01 0.42 -0.84 16 2 C -0.15 -1.01 9.52 -36.03 -0.34 -1.35 16 3 C -0.10 -0.65 5.66 -27.89 -0.16 -0.81 16 4 C -0.12 -0.80 5.20 -26.74 -0.14 -0.94 16 5 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 6 C -0.12 -1.01 5.22 -26.73 -0.14 -1.15 16 7 C -0.11 -1.16 5.11 -26.73 -0.14 -1.30 16 8 C -0.15 -1.66 4.89 -26.74 -0.13 -1.79 16 9 C 0.12 1.70 3.24 -26.74 -0.09 1.61 16 10 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 11 O -0.55 -8.25 12.74 -35.23 -0.45 -8.70 16 12 C -0.01 -0.20 4.48 -3.83 -0.02 -0.21 16 13 N -0.47 -9.74 6.20 -244.63 -1.52 -11.26 16 14 C 0.00 0.07 7.28 -7.54 -0.05 0.02 16 15 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 16 C -0.52 -14.22 8.83 -34.44 -0.30 -14.53 16 17 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 18 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 19 N -0.89 -25.77 13.26 55.43 0.74 -25.03 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.01 -0.16 7.25 -7.54 -0.05 -0.21 16 25 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 26 H 0.10 0.56 7.84 -52.48 -0.41 0.15 16 27 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 28 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 37 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.36 4.23 9.05 45.56 0.41 4.64 16 41 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 42 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 44 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.06 1.80 8.11 -51.93 -0.42 1.38 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -29.43 387.81 -10.84 -40.27 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.71 Total: 2.87 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.73 Total: -20.09 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.78 Total: -36.29 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.45 Total: -8.70 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.43 -10.84 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253228961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.932 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds