Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47584 * 2 1 4 4 C 1.53089 * 109.47934 * 120.01936 * 2 1 3 5 5 C 1.53177 * 109.16129 * 177.59021 * 4 2 1 6 6 H 1.09002 * 109.54364 * 62.98172 * 5 4 2 7 7 N 1.46897 * 109.54301 * 183.15409 * 5 4 2 8 8 C 1.46896 * 111.00209 * 303.78087 * 7 5 4 9 9 C 1.50703 * 109.47302 * 163.25282 * 8 7 5 10 10 H 1.08008 * 119.99814 * 354.34085 * 9 8 7 11 11 C 1.37875 * 120.00335 * 174.34445 * 9 8 7 12 12 N 1.31519 * 119.99736 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00101 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47082 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46905 * 120.00109 * 13 11 9 16 16 H 1.48498 * 109.47231 * 239.99691 * 13 11 9 17 17 C 1.46904 * 111.00130 * 179.82494 * 7 5 4 18 18 C 1.54263 * 110.49027 * 215.92409 * 17 7 5 19 19 C 1.53868 * 106.64196 * 217.73441 * 18 17 7 20 20 C 1.54265 * 106.59961 * 359.97438 * 19 18 17 21 21 C 1.54891 * 104.19644 * 23.60890 * 20 19 18 22 22 C 1.53176 * 109.11218 * 303.07024 * 5 4 2 23 23 C 1.53101 * 109.15656 * 56.84630 * 22 5 4 24 24 O 1.42894 * 109.48167 * 239.96655 * 2 1 3 25 25 H 1.08998 * 109.47271 * 299.97330 * 1 2 3 26 26 H 1.09002 * 109.47483 * 59.97983 * 1 2 3 27 27 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47029 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47529 * 300.02236 * 3 2 1 30 30 H 1.09002 * 109.47395 * 60.02657 * 3 2 1 31 31 H 1.09004 * 109.52071 * 57.69135 * 4 2 1 32 32 H 1.08994 * 109.57899 * 297.53536 * 4 2 1 33 33 H 1.09005 * 109.47042 * 283.24836 * 8 7 5 34 34 H 1.08994 * 109.47297 * 43.24735 * 8 7 5 35 35 H 0.96997 * 119.99474 * 180.02562 * 12 11 9 36 36 H 1.09001 * 110.53835 * 338.54202 * 17 7 5 37 37 H 1.09001 * 110.02858 * 98.42518 * 18 17 7 38 38 H 1.08995 * 110.03282 * 337.04636 * 18 17 7 39 39 H 1.09003 * 110.03590 * 119.25779 * 19 18 17 40 40 H 1.08997 * 110.03481 * 240.64282 * 19 18 17 41 41 H 1.08996 * 110.48964 * 142.28615 * 20 19 18 42 42 H 1.09000 * 110.48756 * 264.79953 * 20 19 18 43 43 H 1.08996 * 110.75868 * 80.37028 * 21 20 19 44 44 H 1.08996 * 110.75712 * 203.56143 * 21 20 19 45 45 H 1.09001 * 109.51881 * 176.83935 * 22 5 4 46 46 H 1.09002 * 109.52010 * 297.02580 * 22 5 4 47 47 H 1.09007 * 109.47949 * 182.49662 * 23 22 5 48 48 H 1.08997 * 109.41713 * 62.51805 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7707 1.2122 6 1 3.9690 0.2437 1.2424 7 7 4.0671 -1.5277 2.3693 8 6 3.5733 -0.9508 3.6268 9 6 3.7430 -1.9525 4.7398 10 1 4.0887 -2.9517 4.5191 11 6 3.4569 -1.5936 6.0399 12 7 3.0363 -0.3768 6.3088 13 14 3.6666 -2.8355 7.4195 14 1 4.1490 -4.1226 6.8576 15 1 4.6559 -2.3226 8.4010 16 1 2.3622 -3.0482 8.0966 17 6 5.5344 -1.5978 2.3628 18 6 6.0121 -2.9640 2.8969 19 6 7.2766 -2.6934 3.7308 20 6 7.5245 -1.1718 3.6743 21 6 6.1321 -0.5715 3.3582 22 6 4.0195 -1.4587 -0.0807 23 6 3.4307 -0.7093 -1.2789 24 8 2.0066 -0.6742 -1.1663 25 1 -0.3634 0.5134 0.8902 26 1 -0.3634 0.5141 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1302 1.4424 -0.0005 29 1 1.6766 1.9565 -0.8897 30 1 1.6772 1.9562 0.8902 31 1 1.6443 -1.7373 1.2711 32 1 1.7147 -0.1851 2.1404 33 1 4.1397 -0.0491 3.8600 34 1 2.5178 -0.6998 3.5216 35 1 2.8353 -0.1242 7.2235 36 1 5.9211 -1.4245 1.3585 37 1 6.2482 -3.6281 2.0654 38 1 5.2401 -3.4105 3.5235 39 1 7.1180 -3.0078 4.7624 40 1 8.1262 -3.2269 3.3046 41 1 7.8872 -0.8084 4.6358 42 1 8.2348 -0.9301 2.8836 43 1 5.5238 -0.5105 4.2606 44 1 6.2308 0.4095 2.8935 45 1 5.1078 -1.4470 -0.1410 46 1 3.6645 -2.4893 -0.0869 47 1 3.7100 -1.2204 -2.2004 48 1 3.8193 0.3089 -1.2960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255543543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -42.905821 kcal Electronic energy + Delta-G solvation = -24559.273228 eV Core-core repulsion = 21421.004487 eV Total energy + Delta-G solvation = -3138.268740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00169 -38.19721 -34.88749 -33.37502 -32.83508 -31.01179 -28.16238 -27.97015 -27.37150 -27.00742 -25.45319 -23.66424 -21.68025 -20.96959 -19.70784 -18.92988 -18.33368 -16.73018 -15.92397 -15.71271 -15.19471 -14.93799 -14.72845 -14.46527 -13.93108 -13.65820 -13.34342 -12.91485 -12.70269 -12.56808 -12.23471 -12.12833 -11.97633 -11.80065 -11.64001 -11.35416 -11.04794 -10.98738 -10.89208 -10.79368 -10.62669 -10.51562 -10.46854 -10.26962 -10.18683 -9.86474 -9.77675 -9.46751 -9.22023 -9.10398 -8.87543 -8.35808 -7.08737 -6.00632 -3.99647 3.30445 3.38976 3.42980 3.95778 4.42320 4.72773 4.99328 5.06140 5.17049 5.28613 5.33588 5.37394 5.39576 5.47759 5.49697 5.63791 5.66973 5.73403 5.79140 5.88931 5.91110 5.95399 6.02447 6.13317 6.21118 6.22898 6.23920 6.30319 6.30995 6.33424 6.44048 6.50160 6.54538 6.60074 6.66644 6.72204 6.81376 6.98405 7.09104 7.19593 7.41242 7.50023 7.54045 7.95687 8.19270 8.27422 8.61280 9.09895 9.63607 11.09430 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006360 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.243099 B = 4401.603535 C = 5477.495683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.112 3.888 3 C -0.178 4.178 4 C -0.133 4.133 5 C 0.087 3.913 6 H 0.029 0.971 7 N -0.525 5.525 8 C 0.177 3.823 9 C -0.495 4.495 10 H 0.070 0.930 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.093 3.907 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.164 4.164 22 C -0.149 4.149 23 C 0.062 3.938 24 O -0.378 6.378 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.012 0.988 34 H 0.029 0.971 35 H 0.259 0.741 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.123 0.877 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 1.260 -11.715 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.072 3.928 3 C -0.235 4.235 4 C -0.171 4.171 5 C -0.022 4.022 6 H 0.046 0.954 7 N -0.248 5.248 8 C 0.053 3.947 9 C -0.533 4.533 10 H 0.088 0.912 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.016 4.016 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.202 4.202 22 C -0.187 4.187 23 C -0.015 4.015 24 O -0.297 6.297 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.757 0.800 -11.732 11.889 hybrid contribution 0.748 0.382 1.175 1.444 sum 2.505 1.182 -10.556 10.914 Atomic orbital electron populations 1.21728 0.92693 1.02752 1.02041 1.21526 0.94522 0.90998 0.85709 1.22445 1.01997 0.96777 1.02312 1.22298 0.95520 1.02053 0.97194 1.21529 0.94589 0.94656 0.91440 0.95354 1.62302 1.07344 1.52042 1.03153 1.20098 0.95316 0.94691 0.84640 1.21332 1.42891 0.98543 0.90550 0.91218 1.24953 0.95766 0.95183 0.98709 1.69961 1.46380 1.18043 1.19623 0.86581 0.77631 0.81776 0.82341 1.19667 1.21264 1.21209 1.22344 0.88003 0.94877 0.96373 1.22297 0.97356 0.96893 0.98674 1.22028 0.97275 0.95785 1.00458 1.22193 0.97385 0.95910 1.00002 1.23431 0.96526 0.96678 1.03577 1.22337 1.00470 1.01282 0.94587 1.22528 0.81518 0.99256 0.98183 1.87899 1.20760 1.77585 1.43474 0.91069 0.92346 0.91839 0.92013 0.92403 0.91410 0.90468 0.90034 0.97053 0.95363 0.93166 0.92496 0.93934 0.88818 0.92099 0.93465 0.92642 0.93343 0.85906 0.94083 0.91356 0.90442 0.89452 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.85 37.16 0.33 -1.41 16 2 C 0.11 1.64 1.11 -90.57 -0.10 1.53 16 3 C -0.18 -2.37 7.93 37.16 0.29 -2.08 16 4 C -0.13 -2.29 3.81 -26.59 -0.10 -2.39 16 5 C 0.09 1.53 1.68 -67.53 -0.11 1.41 16 6 H 0.03 0.52 6.62 -51.93 -0.34 0.18 16 7 N -0.53 -10.73 4.23 -217.91 -0.92 -11.65 16 8 C 0.18 4.29 4.10 -4.98 -0.02 4.27 16 9 C -0.49 -12.98 7.33 -34.44 -0.25 -13.23 16 10 H 0.07 1.84 5.14 -52.48 -0.27 1.57 16 11 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 12 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 17 C 0.09 1.75 2.69 -66.01 -0.18 1.57 16 18 C -0.11 -2.11 6.15 -25.62 -0.16 -2.27 16 19 C -0.12 -2.00 6.80 -25.62 -0.17 -2.18 16 20 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 21 C -0.16 -3.21 5.24 -24.70 -0.13 -3.34 16 22 C -0.15 -2.24 5.24 -26.59 -0.14 -2.38 16 23 C 0.06 0.83 6.51 37.21 0.24 1.07 16 24 O -0.38 -5.72 10.24 -35.23 -0.36 -6.08 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.84 4.98 -51.92 -0.26 0.58 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.54 6.20 -51.93 -0.32 1.22 16 33 H 0.01 0.31 5.45 -51.93 -0.28 0.03 16 34 H 0.03 0.74 5.51 -51.93 -0.29 0.45 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.06 0.99 5.63 -51.93 -0.29 0.69 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.00 5.07 -51.93 -0.26 1.74 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.12 2.91 4.49 -51.93 -0.23 2.68 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.97 6.17 -51.93 -0.32 0.65 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -27.54 342.26 -9.43 -36.97 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.26 Total: 4.51 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -0.77 Total: -20.20 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.19 Total: -36.55 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.36 Total: -6.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.54 -9.43 -36.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255543543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.932 kcal (2) G-P(sol) polarization free energy of solvation -27.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds