Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.48155 * 2 1 4 4 C 1.53090 * 109.48313 * 120.02745 * 2 1 3 5 5 C 1.53174 * 109.16657 * 62.37046 * 4 2 1 6 6 H 1.09008 * 109.54415 * 297.03234 * 5 4 2 7 7 N 1.46895 * 109.54838 * 176.85196 * 5 4 2 8 8 C 1.46899 * 110.99969 * 56.04414 * 7 5 4 9 9 C 1.50704 * 109.47413 * 185.89947 * 8 7 5 10 10 H 1.08002 * 119.99264 * 355.89109 * 9 8 7 11 11 C 1.37870 * 120.00258 * 175.89260 * 9 8 7 12 12 N 1.31512 * 119.99926 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00049 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47067 * 90.00049 * 13 11 9 15 15 H 1.48498 * 109.47258 * 210.00350 * 13 11 9 16 16 H 1.48503 * 109.47152 * 329.99900 * 13 11 9 17 17 C 1.46898 * 111.00364 * 180.02562 * 7 5 4 18 18 C 1.54263 * 110.02910 * 267.02821 * 17 7 5 19 19 C 1.54896 * 104.19515 * 217.10479 * 18 17 7 20 20 C 1.54887 * 102.74623 * 37.94130 * 19 18 17 21 21 C 1.53869 * 110.03370 * 149.86170 * 17 7 5 22 22 C 1.53183 * 109.03511 * 56.98206 * 5 4 2 23 23 C 1.53087 * 109.16213 * 303.02258 * 22 5 4 24 24 O 1.42898 * 109.41838 * 57.60571 * 23 22 5 25 25 H 1.08998 * 109.46962 * 299.97509 * 1 2 3 26 26 H 1.09001 * 109.46771 * 59.97269 * 1 2 3 27 27 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47458 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47157 * 300.02055 * 3 2 1 30 30 H 1.08997 * 109.47064 * 60.02743 * 3 2 1 31 31 H 1.09002 * 109.51687 * 302.46947 * 4 2 1 32 32 H 1.08998 * 109.57719 * 182.31203 * 4 2 1 33 33 H 1.08994 * 109.47154 * 65.90084 * 8 7 5 34 34 H 1.09006 * 109.47389 * 305.89546 * 8 7 5 35 35 H 0.97000 * 120.00109 * 180.02562 * 12 11 9 36 36 H 1.08998 * 110.01601 * 28.46995 * 17 7 5 37 37 H 1.08997 * 110.48863 * 335.77612 * 18 17 7 38 38 H 1.08998 * 110.48728 * 98.42681 * 18 17 7 39 39 H 1.09004 * 110.75493 * 279.63041 * 19 18 17 40 40 H 1.08996 * 110.75840 * 156.25855 * 19 18 17 41 41 H 1.09002 * 110.48482 * 203.37909 * 20 19 18 42 42 H 1.09000 * 110.60313 * 80.79666 * 20 19 18 43 43 H 1.09005 * 110.03154 * 238.56864 * 21 17 7 44 44 H 1.09003 * 110.03555 * 359.94851 * 21 17 7 45 45 H 1.09000 * 109.51973 * 62.92725 * 22 5 4 46 46 H 1.08998 * 109.51942 * 183.11931 * 22 5 4 47 47 H 1.09001 * 109.48204 * 297.62588 * 23 22 5 48 48 H 1.09007 * 109.47957 * 177.59202 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5758 -2.1812 1.2123 6 1 0.4867 -2.2179 1.2425 7 7 2.1240 -2.9014 2.3693 8 6 1.7486 -2.2410 3.6266 9 6 2.4448 -2.9198 4.7780 10 1 3.0477 -3.7984 4.6022 11 6 2.3120 -2.4191 6.0558 12 7 1.5774 -1.3495 6.2699 13 14 3.1744 -3.2609 7.4830 14 1 4.5266 -2.6733 7.6603 15 1 2.3831 -3.0655 8.7243 16 1 3.2991 -4.7132 7.1990 17 6 1.6976 -4.3072 2.3648 18 6 0.4118 -4.4720 3.2009 19 6 0.5895 -5.8399 3.9055 20 6 2.0998 -5.8537 4.2490 21 6 2.7709 -5.1856 3.0311 22 6 2.0765 -2.8323 -0.0808 23 6 1.5645 -2.0286 -1.2789 24 8 2.0065 -0.6743 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1302 1.4422 -0.0005 29 1 1.6767 1.9564 -0.8898 30 1 1.6774 1.9561 0.8902 31 1 1.6421 -0.2356 2.1398 32 1 3.1298 -0.6874 1.2721 33 1 0.6694 -2.3081 3.7641 34 1 2.0457 -1.1929 3.5894 35 1 1.4843 -0.9971 7.1688 36 1 1.5241 -4.6411 1.3418 37 1 0.3299 -3.6719 3.9366 38 1 -0.4649 -4.4875 2.5535 39 1 0.3396 -6.6579 3.2297 40 1 -0.0133 -5.8887 4.8122 41 1 2.4550 -6.8775 4.3663 42 1 2.2925 -5.2780 5.1542 43 1 3.1176 -5.9465 2.3318 44 1 3.6086 -4.5691 3.3571 45 1 3.1664 -2.8400 -0.0862 46 1 1.7036 -3.8547 -0.1418 47 1 0.4750 -2.0551 -1.2956 48 1 1.9531 -2.4624 -2.2004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255543545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -33.771498 kcal Electronic energy + Delta-G solvation = -24705.832866 eV Core-core repulsion = 21567.960220 eV Total energy + Delta-G solvation = -3137.872646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03920 -38.36440 -34.75751 -33.37842 -32.75275 -30.96710 -28.15824 -27.98333 -27.47806 -27.03805 -25.29510 -23.64655 -21.63069 -20.94943 -19.88544 -18.90326 -18.19585 -16.93161 -15.92836 -15.68551 -15.16261 -14.89813 -14.54138 -14.48986 -13.99295 -13.55051 -13.31697 -12.97126 -12.80300 -12.49199 -12.26980 -12.07889 -11.96983 -11.73916 -11.64471 -11.39452 -11.09917 -10.89430 -10.81596 -10.72832 -10.62996 -10.44228 -10.32517 -10.28333 -10.07926 -9.86068 -9.66685 -9.40545 -9.26579 -9.11626 -8.74832 -8.36456 -7.09030 -5.99839 -3.97317 3.31345 3.38547 3.39730 3.95664 4.42725 4.74355 4.99411 5.06157 5.17337 5.29543 5.34395 5.40231 5.45544 5.49534 5.53939 5.65759 5.70405 5.74984 5.79794 5.89575 5.91473 5.99903 6.04929 6.13836 6.21941 6.24195 6.30388 6.32586 6.37508 6.41048 6.49284 6.50990 6.61297 6.67527 6.71665 6.74707 6.83427 7.01371 7.08734 7.24778 7.44746 7.50461 7.57785 7.93426 8.16023 8.29602 8.63250 9.10192 9.65070 11.11710 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.006242 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.981685 B = 4484.931450 C = 5436.929101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.086 3.914 6 H 0.030 0.970 7 N -0.526 5.526 8 C 0.183 3.817 9 C -0.509 4.509 10 H 0.087 0.913 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.884 3.116 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.271 1.271 17 C 0.093 3.907 18 C -0.168 4.168 19 C -0.111 4.111 20 C -0.127 4.127 21 C -0.106 4.106 22 C -0.149 4.149 23 C 0.062 3.938 24 O -0.378 6.378 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.076 0.924 33 H -0.001 1.001 34 H 0.035 0.965 35 H 0.258 0.742 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -1.614 -11.531 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.073 3.927 3 C -0.192 4.192 4 C -0.170 4.170 5 C -0.023 4.023 6 H 0.047 0.953 7 N -0.249 5.249 8 C 0.059 3.941 9 C -0.547 4.547 10 H 0.104 0.896 11 C -0.145 4.145 12 N -0.541 5.541 13 Si 0.712 3.288 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.196 1.196 17 C -0.015 4.015 18 C -0.206 4.206 19 C -0.149 4.149 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.187 4.187 23 C -0.015 4.015 24 O -0.297 6.297 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.016 0.984 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.426 -1.386 -11.554 11.724 hybrid contribution -0.731 -0.626 1.194 1.534 sum -2.157 -2.012 -10.360 10.772 Atomic orbital electron populations 1.22444 0.96228 1.02543 1.02312 1.21523 0.92762 0.92755 0.85696 1.21727 1.01956 0.93485 1.02050 1.22266 1.02435 0.95086 0.97214 1.21536 0.95790 0.93515 0.91478 0.95260 1.62469 1.58315 1.00999 1.03135 1.19968 0.94408 0.94993 0.84750 1.21739 1.29399 1.12859 0.90719 0.89578 1.24948 0.95668 0.95126 0.98799 1.69953 1.40078 1.22681 1.21348 0.86726 0.79656 0.80089 0.82286 1.20820 1.21536 1.19582 1.22107 0.93076 0.89630 0.96733 1.23330 0.96641 0.99803 1.00848 1.22252 0.96967 0.96679 0.99033 1.22545 0.94733 0.98672 1.00464 1.22218 0.99357 0.97054 0.95761 1.22333 1.02673 0.99064 0.94597 1.22532 0.98292 0.82480 0.98188 1.87899 1.73899 1.24461 1.43477 0.91411 0.92403 0.92010 0.91847 0.92344 0.91059 0.90165 0.90510 0.98395 0.94694 0.93192 0.92501 0.86488 0.94520 0.93519 0.92713 0.93992 0.89329 0.94255 0.89420 0.90432 0.91358 0.93500 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 7.93 37.16 0.29 -2.08 16 2 C 0.11 1.64 1.11 -90.57 -0.10 1.54 16 3 C -0.13 -1.74 8.85 37.16 0.33 -1.41 16 4 C -0.13 -2.28 3.74 -26.60 -0.10 -2.38 16 5 C 0.09 1.50 1.70 -67.53 -0.11 1.39 16 6 H 0.03 0.54 6.62 -51.92 -0.34 0.19 16 7 N -0.53 -10.68 4.22 -218.60 -0.92 -11.61 16 8 C 0.18 4.42 3.88 -4.97 -0.02 4.40 16 9 C -0.51 -13.09 6.34 -34.44 -0.22 -13.31 16 10 H 0.09 2.15 2.80 -52.49 -0.15 2.00 16 11 C 0.06 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 13 Si 0.88 20.97 29.10 -169.99 -4.95 16.03 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.20 6.92 56.52 0.39 -5.81 16 17 C 0.09 1.75 2.72 -66.60 -0.18 1.57 16 18 C -0.17 -3.25 5.71 -25.07 -0.14 -3.39 16 19 C -0.11 -1.97 6.91 -24.74 -0.17 -2.14 16 20 C -0.13 -2.37 6.19 -25.07 -0.16 -2.52 16 21 C -0.11 -1.98 5.64 -25.62 -0.14 -2.13 16 22 C -0.15 -2.23 5.23 -26.59 -0.14 -2.37 16 23 C 0.06 0.83 6.51 37.20 0.24 1.07 16 24 O -0.38 -5.71 10.24 -35.23 -0.36 -6.07 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.84 4.98 -51.93 -0.26 0.58 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.52 6.42 -51.93 -0.33 1.18 16 32 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.00 -0.03 5.67 -51.93 -0.29 -0.33 16 34 H 0.04 0.92 5.99 -51.93 -0.31 0.61 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.06 0.98 5.56 -51.93 -0.29 0.69 16 37 H 0.12 2.70 4.08 -51.93 -0.21 2.48 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.91 5.39 -51.93 -0.28 1.63 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.84 6.04 -51.93 -0.31 1.52 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 0.97 6.14 -51.93 -0.32 0.65 16 47 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -27.33 336.11 -9.22 -36.55 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.07 Total: 5.37 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.72 Total: -20.37 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.19 Total: -36.57 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.36 Total: -6.07 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.95 Total: 16.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.33 -9.22 -36.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255543545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.779 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds