Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.48155 * 2 1 4 4 C 1.53090 * 109.48313 * 120.02745 * 2 1 3 5 5 C 1.53174 * 109.16657 * 62.37046 * 4 2 1 6 6 H 1.09008 * 109.54415 * 297.03234 * 5 4 2 7 7 N 1.46895 * 109.54838 * 176.85196 * 5 4 2 8 8 C 1.46899 * 110.99969 * 56.04414 * 7 5 4 9 9 C 1.50704 * 109.47413 * 185.89947 * 8 7 5 10 10 H 1.08002 * 119.99264 * 355.89109 * 9 8 7 11 11 C 1.37870 * 120.00258 * 175.89260 * 9 8 7 12 12 N 1.31512 * 119.99926 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00049 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47067 * 90.00049 * 13 11 9 15 15 H 1.48498 * 109.47258 * 210.00350 * 13 11 9 16 16 H 1.48503 * 109.47152 * 329.99900 * 13 11 9 17 17 C 1.46898 * 111.00364 * 180.02562 * 7 5 4 18 18 C 1.54263 * 110.02910 * 267.02821 * 17 7 5 19 19 C 1.54896 * 104.19515 * 217.10479 * 18 17 7 20 20 C 1.54887 * 102.74623 * 37.94130 * 19 18 17 21 21 C 1.53869 * 110.03370 * 149.86170 * 17 7 5 22 22 C 1.53183 * 109.03511 * 56.98206 * 5 4 2 23 23 C 1.53087 * 109.16213 * 303.02258 * 22 5 4 24 24 O 1.42898 * 109.41838 * 57.60571 * 23 22 5 25 25 H 1.08998 * 109.46962 * 299.97509 * 1 2 3 26 26 H 1.09001 * 109.46771 * 59.97269 * 1 2 3 27 27 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47458 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47157 * 300.02055 * 3 2 1 30 30 H 1.08997 * 109.47064 * 60.02743 * 3 2 1 31 31 H 1.09002 * 109.51687 * 302.46947 * 4 2 1 32 32 H 1.08998 * 109.57719 * 182.31203 * 4 2 1 33 33 H 1.08994 * 109.47154 * 65.90084 * 8 7 5 34 34 H 1.09006 * 109.47389 * 305.89546 * 8 7 5 35 35 H 0.97000 * 120.00109 * 180.02562 * 12 11 9 36 36 H 1.08998 * 110.01601 * 28.46995 * 17 7 5 37 37 H 1.08997 * 110.48863 * 335.77612 * 18 17 7 38 38 H 1.08998 * 110.48728 * 98.42681 * 18 17 7 39 39 H 1.09004 * 110.75493 * 279.63041 * 19 18 17 40 40 H 1.08996 * 110.75840 * 156.25855 * 19 18 17 41 41 H 1.09002 * 110.48482 * 203.37909 * 20 19 18 42 42 H 1.09000 * 110.60313 * 80.79666 * 20 19 18 43 43 H 1.09005 * 110.03154 * 238.56864 * 21 17 7 44 44 H 1.09003 * 110.03555 * 359.94851 * 21 17 7 45 45 H 1.09000 * 109.51973 * 62.92725 * 22 5 4 46 46 H 1.08998 * 109.51942 * 183.11931 * 22 5 4 47 47 H 1.09001 * 109.48204 * 297.62588 * 23 22 5 48 48 H 1.09007 * 109.47957 * 177.59202 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5758 -2.1812 1.2123 6 1 0.4867 -2.2179 1.2425 7 7 2.1240 -2.9014 2.3693 8 6 1.7486 -2.2410 3.6266 9 6 2.4448 -2.9198 4.7780 10 1 3.0477 -3.7984 4.6022 11 6 2.3120 -2.4191 6.0558 12 7 1.5774 -1.3495 6.2699 13 14 3.1744 -3.2609 7.4830 14 1 4.5266 -2.6733 7.6603 15 1 2.3831 -3.0655 8.7243 16 1 3.2991 -4.7132 7.1990 17 6 1.6976 -4.3072 2.3648 18 6 0.4118 -4.4720 3.2009 19 6 0.5895 -5.8399 3.9055 20 6 2.0998 -5.8537 4.2490 21 6 2.7709 -5.1856 3.0311 22 6 2.0765 -2.8323 -0.0808 23 6 1.5645 -2.0286 -1.2789 24 8 2.0065 -0.6743 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1302 1.4422 -0.0005 29 1 1.6767 1.9564 -0.8898 30 1 1.6774 1.9561 0.8902 31 1 1.6421 -0.2356 2.1398 32 1 3.1298 -0.6874 1.2721 33 1 0.6694 -2.3081 3.7641 34 1 2.0457 -1.1929 3.5894 35 1 1.4843 -0.9971 7.1688 36 1 1.5241 -4.6411 1.3418 37 1 0.3299 -3.6719 3.9366 38 1 -0.4649 -4.4875 2.5535 39 1 0.3396 -6.6579 3.2297 40 1 -0.0133 -5.8887 4.8122 41 1 2.4550 -6.8775 4.3663 42 1 2.2925 -5.2780 5.1542 43 1 3.1176 -5.9465 2.3318 44 1 3.6086 -4.5691 3.3571 45 1 3.1664 -2.8400 -0.0862 46 1 1.7036 -3.8547 -0.1418 47 1 0.4750 -2.0551 -1.2956 48 1 1.9531 -2.4624 -2.2004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255543545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -49.439782 kcal Electronic energy + Delta-G solvation = -24706.512294 eV Core-core repulsion = 21567.960220 eV Total energy + Delta-G solvation = -3138.552074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37564 -39.81505 -36.21377 -34.76224 -34.49565 -32.47514 -29.62720 -29.50562 -29.02278 -28.22832 -26.82714 -25.18892 -23.24427 -22.31471 -21.35408 -20.19888 -19.72650 -18.76474 -17.23820 -17.09739 -16.65620 -16.50191 -16.09639 -15.90912 -15.40489 -14.84573 -14.79779 -14.67255 -14.10527 -13.88759 -13.85675 -13.47462 -13.32282 -13.00679 -12.90005 -12.86683 -12.71097 -12.57678 -12.26050 -12.13043 -12.02639 -11.97926 -11.90805 -11.74450 -11.66994 -11.34850 -11.01669 -10.98946 -10.94991 -10.56161 -10.43394 -10.35982 -8.77656 -8.08894 -6.10819 1.39939 1.41588 1.50062 2.44776 2.84108 3.22736 3.28705 3.74628 3.88222 3.91124 3.94994 4.00159 4.13850 4.20987 4.27918 4.38474 4.41917 4.51726 4.64469 4.67019 4.78134 4.79361 4.80431 4.85057 4.86718 4.90363 4.93260 5.00044 5.04797 5.08705 5.12776 5.15183 5.22651 5.24358 5.25600 5.33252 5.36344 5.42434 5.44881 5.61990 5.73836 5.81586 5.91788 6.24226 6.36487 6.54598 6.83970 7.06098 7.55557 9.03132 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.006242 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.981685 B = 4484.931450 C = 5436.929101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 C -0.134 4.134 4 C -0.127 4.127 5 C 0.084 3.916 6 H 0.025 0.975 7 N -0.533 5.533 8 C 0.203 3.797 9 C -0.504 4.504 10 H 0.096 0.904 11 C 0.002 3.998 12 N -0.939 5.939 13 Si 0.940 3.060 14 H -0.282 1.282 15 H -0.292 1.292 16 H -0.255 1.255 17 C 0.091 3.909 18 C -0.167 4.167 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.104 4.104 22 C -0.140 4.140 23 C 0.061 3.939 24 O -0.386 6.386 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.056 0.944 33 H -0.024 1.024 34 H 0.003 0.997 35 H 0.256 0.744 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -3.602 -13.625 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.075 3.925 3 C -0.191 4.191 4 C -0.165 4.165 5 C -0.025 4.025 6 H 0.042 0.958 7 N -0.256 5.256 8 C 0.077 3.923 9 C -0.542 4.542 10 H 0.114 0.886 11 C -0.195 4.195 12 N -0.582 5.582 13 Si 0.767 3.233 14 H -0.208 1.208 15 H -0.218 1.218 16 H -0.179 1.179 17 C -0.017 4.017 18 C -0.206 4.206 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.178 4.178 23 C -0.016 4.016 24 O -0.306 6.306 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.075 0.925 33 H -0.007 1.007 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.428 -3.395 -13.666 14.154 hybrid contribution -0.734 -0.019 1.794 1.939 sum -2.162 -3.414 -11.872 12.541 Atomic orbital electron populations 1.22399 0.95057 1.02596 1.03043 1.21501 0.93601 0.93143 0.84248 1.21737 1.01697 0.92659 1.03050 1.22181 1.00986 0.95503 0.97820 1.21638 0.95453 0.93607 0.91770 0.95759 1.62399 1.58772 1.02078 1.02363 1.19571 0.92697 0.93457 0.86554 1.22129 1.28343 1.12633 0.91128 0.88621 1.25698 0.96565 0.95784 1.01411 1.70094 1.42068 1.24433 1.21559 0.85823 0.78314 0.79969 0.79228 1.20815 1.21819 1.17945 1.22251 0.92890 0.88506 0.98081 1.23200 0.97601 0.99515 1.00252 1.22249 0.96196 0.96504 0.99357 1.22493 0.95598 0.99574 0.98853 1.22189 0.98208 0.97358 0.96450 1.22272 1.01955 0.99949 0.93578 1.22710 0.99160 0.81384 0.98316 1.87900 1.74263 1.25394 1.43011 0.91961 0.90365 0.92298 0.92326 0.90449 0.90936 0.93031 0.92471 1.00700 0.97922 0.93546 0.89922 0.90838 0.93089 0.90287 0.93193 0.91303 0.92808 0.91170 0.92196 0.91488 0.89806 0.92295 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 7.93 71.98 0.57 -3.87 16 2 C 0.11 3.28 1.11 -10.76 -0.01 3.27 16 3 C -0.13 -3.38 8.85 71.98 0.64 -2.75 16 4 C -0.13 -4.53 3.74 30.68 0.11 -4.41 16 5 C 0.08 2.94 1.70 45.04 0.08 3.02 16 6 H 0.02 0.89 6.62 -2.38 -0.02 0.87 16 7 N -0.53 -21.94 4.22 -845.52 -3.57 -25.51 16 8 C 0.20 10.28 3.88 85.56 0.33 10.61 16 9 C -0.50 -26.80 6.34 25.60 0.16 -26.63 16 10 H 0.10 4.85 2.80 -2.91 -0.01 4.84 16 11 C 0.00 0.11 5.46 84.65 0.46 0.57 16 12 N -0.94 -56.08 13.29 21.44 0.28 -55.80 16 13 Si 0.94 43.99 29.10 68.60 2.00 45.99 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 16 H -0.26 -11.20 6.92 99.48 0.69 -10.51 16 17 C 0.09 3.29 2.72 45.64 0.12 3.42 16 18 C -0.17 -6.34 5.71 31.67 0.18 -6.16 16 19 C -0.11 -3.49 6.91 31.89 0.22 -3.27 16 20 C -0.13 -4.52 6.19 31.67 0.20 -4.32 16 21 C -0.10 -3.69 5.64 31.32 0.18 -3.51 16 22 C -0.14 -3.89 5.23 30.68 0.16 -3.73 16 23 C 0.06 1.44 6.51 72.01 0.47 1.91 16 24 O -0.39 -10.89 10.24 -148.98 -1.53 -12.42 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.52 4.98 -2.39 -0.01 1.51 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 2.11 6.42 -2.39 -0.02 2.09 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H -0.02 -1.33 5.67 -2.39 -0.01 -1.34 16 34 H 0.00 0.16 5.99 -2.38 -0.01 0.14 16 35 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.08 2.58 5.56 -2.39 -0.01 2.56 16 37 H 0.07 3.49 4.08 -2.39 -0.01 3.49 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.28 5.39 -2.39 -0.01 2.26 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.06 2.46 6.04 -2.39 -0.01 2.45 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.08 2.08 6.14 -2.39 -0.01 2.06 16 47 H 0.06 1.28 6.34 -2.39 -0.02 1.27 16 48 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -61.28 336.11 1.98 -59.31 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.92 Total: 24.29 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.87 Total: -35.86 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.29 Total: -81.31 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.53 Total: -12.42 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.00 Total: 45.99 kcal Total: -61.28 1.98 -59.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255543545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.866 kcal (2) G-P(sol) polarization free energy of solvation -61.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds