Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 N 1.46501 * 109.46726 * 179.97438 * 3 2 1 5 5 N 1.40588 * 127.37931 * 275.44117 * 4 3 2 6 6 N 1.28908 * 106.81493 * 179.97438 * 5 4 3 7 7 N 1.28421 * 110.31827 * 359.72322 * 6 5 4 8 8 C 1.31474 * 110.50740 * 0.46238 * 7 6 5 9 9 N 1.38382 * 126.43995 * 179.81484 * 8 7 6 10 10 C 1.46902 * 110.99917 * 251.86061 * 9 8 7 11 11 C 1.50699 * 109.46718 * 196.24734 * 10 9 8 12 12 H 1.08002 * 119.99588 * 239.99966 * 11 10 9 13 13 C 1.37878 * 120.00268 * 60.00350 * 11 10 9 14 14 N 1.31512 * 120.00058 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99829 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47044 * 89.99983 * 15 13 11 17 17 H 1.48499 * 109.46645 * 210.00012 * 15 13 11 18 18 H 1.48495 * 109.47239 * 330.00026 * 15 13 11 19 19 C 1.46894 * 110.99982 * 15.81881 * 9 8 7 20 20 C 1.53005 * 109.47301 * 159.86560 * 19 9 8 21 21 C 1.52991 * 109.47364 * 183.99608 * 20 19 9 22 22 C 1.53003 * 109.47502 * 64.99937 * 21 20 19 23 23 C 1.52998 * 109.47285 * 185.00070 * 21 20 19 24 24 H 1.09005 * 109.47118 * 60.00221 * 1 2 3 25 25 H 1.09006 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47455 * 300.00191 * 1 2 3 27 27 H 1.09003 * 109.47455 * 239.99809 * 2 1 3 28 28 H 1.09005 * 109.47118 * 119.99778 * 2 1 3 29 29 H 1.08995 * 109.47192 * 59.99942 * 3 2 1 30 30 H 1.09003 * 109.46903 * 299.99320 * 3 2 1 31 31 H 1.08998 * 109.46560 * 76.24833 * 10 9 8 32 32 H 1.09000 * 109.47366 * 316.24610 * 10 9 8 33 33 H 0.96990 * 120.00376 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.46878 * 279.86474 * 19 9 8 35 35 H 1.08997 * 109.47292 * 39.86539 * 19 9 8 36 36 H 1.09000 * 109.46814 * 303.99562 * 20 19 9 37 37 H 1.09000 * 109.46972 * 63.99519 * 20 19 9 38 38 H 1.09002 * 109.47218 * 304.99864 * 21 20 19 39 39 H 1.09002 * 109.46944 * 59.99759 * 22 21 20 40 40 H 1.08999 * 109.47621 * 180.02562 * 22 21 20 41 41 H 1.09006 * 109.46908 * 300.00421 * 22 21 20 42 42 H 1.09003 * 109.47311 * 59.99683 * 23 21 20 43 43 H 1.09001 * 109.47587 * 180.02562 * 23 21 20 44 44 H 1.09000 * 109.46956 * 299.99506 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3580 1.3367 1.1131 6 7 5.5651 1.3789 0.6628 7 7 5.5602 1.4943 -0.6162 8 6 4.3270 1.5436 -1.0694 9 7 3.9420 1.6692 -2.3927 10 6 3.3928 3.0059 -2.6565 11 6 2.6307 2.9882 -3.9565 12 1 2.9320 3.6342 -4.7679 13 6 1.5489 2.1473 -4.1101 14 7 1.1816 1.3611 -3.1219 15 14 0.6039 2.1259 -5.7213 16 1 1.2018 1.1172 -6.6325 17 1 -0.8151 1.7759 -5.4582 18 1 0.6738 3.4675 -6.3540 19 6 5.0608 1.3718 -3.2969 20 6 4.5170 1.0270 -4.6849 21 6 5.6741 0.6208 -5.5996 22 6 6.3055 -0.6723 -5.0796 23 6 5.1481 0.3967 -7.0187 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 4.2076 3.7268 -2.7227 32 1 2.7216 3.2895 -1.8458 33 1 0.4204 0.7698 -3.2297 34 1 5.7120 2.2430 -3.3679 35 1 5.6271 0.5256 -2.9081 36 1 3.8109 0.2007 -4.6035 37 1 4.0113 1.8972 -5.1034 38 1 6.4236 1.4121 -5.6107 39 1 5.5561 -1.4637 -5.0685 40 1 7.1303 -0.9615 -5.7310 41 1 6.6803 -0.5126 -4.0686 42 1 4.6982 1.3178 -7.3891 43 1 5.9724 0.1067 -7.6703 44 1 4.3987 -0.3948 -7.0076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262212227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = 102.549759 kcal Electronic energy + Delta-G solvation = -23957.084850 eV Core-core repulsion = 20753.875945 eV Total energy + Delta-G solvation = -3203.208905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08112 -37.70546 -35.70754 -35.06104 -32.86230 -31.99416 -30.52250 -28.53090 -27.39612 -26.75074 -26.25368 -23.21709 -22.47757 -22.17799 -20.91820 -20.14751 -19.24349 -16.76068 -16.50996 -15.74505 -15.55211 -14.97950 -14.73113 -14.60819 -13.81839 -13.55799 -13.34050 -13.11554 -12.83698 -12.46092 -12.33836 -12.15484 -11.87675 -11.69331 -11.54985 -11.39989 -11.15062 -11.10389 -11.02315 -10.94651 -10.71681 -10.32174 -10.30087 -10.20166 -10.08919 -9.90530 -9.77333 -9.68504 -9.55584 -9.33269 -8.62809 -7.57932 -6.29791 -4.34617 1.88946 2.63265 3.09694 3.16238 3.22736 3.25921 4.20037 4.43334 5.07925 5.14911 5.34519 5.36187 5.40111 5.46606 5.51357 5.67020 5.68975 5.88446 5.95300 6.07166 6.10019 6.11197 6.17538 6.21245 6.22313 6.27626 6.29529 6.42252 6.50259 6.52842 6.56511 6.61430 6.66281 6.70902 6.74941 6.85508 7.03149 7.12322 7.43784 7.54610 7.74884 7.78577 8.20476 8.63963 9.28882 9.34996 10.75781 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.008384 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.812450 B = 3338.938649 C = 4785.757090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.123 3.877 4 N -0.378 5.378 5 N -0.123 5.123 6 N -0.051 5.051 7 N -0.392 5.392 8 C 0.438 3.562 9 N -0.418 5.418 10 C 0.192 3.808 11 C -0.523 4.523 12 H 0.065 0.935 13 C 0.092 3.908 14 N -0.847 5.847 15 Si 0.883 3.117 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.086 3.914 20 C -0.109 4.109 21 C -0.100 4.100 22 C -0.147 4.147 23 C -0.141 4.141 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.005 0.995 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 -2.193 -1.516 2.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.002 3.998 4 N -0.176 5.176 5 N -0.111 5.111 6 N -0.047 5.047 7 N -0.254 5.254 8 C 0.073 3.927 9 N -0.143 5.143 10 C 0.071 3.929 11 C -0.561 4.561 12 H 0.083 0.917 13 C -0.116 4.116 14 N -0.482 5.482 15 Si 0.711 3.289 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.041 4.041 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.204 4.204 23 C -0.199 4.199 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.408 -2.737 -0.553 2.822 hybrid contribution -0.929 0.204 -1.165 1.504 sum -0.520 -2.533 -1.718 3.105 Atomic orbital electron populations 1.21603 0.94643 1.01394 1.02234 1.21622 0.96506 0.95472 1.02154 1.22348 0.71676 0.99756 1.06054 1.51291 1.09327 1.52662 1.04361 1.82301 0.95244 1.25494 1.08056 1.77665 1.13450 1.09825 1.03762 1.74858 1.18161 1.29139 1.03256 1.23967 0.85140 0.92803 0.90742 1.59647 1.29153 1.32474 0.93035 1.20028 0.93465 0.80747 0.98677 1.20820 1.12131 1.23886 0.99295 0.91725 1.24861 0.96127 0.94405 0.96246 1.69809 1.25358 1.22190 1.30840 0.86732 0.79280 0.78699 0.84225 1.20144 1.21155 1.19862 1.21937 0.89777 0.99677 0.92704 1.21939 0.96007 1.04087 0.92651 1.21176 0.98302 0.97154 0.95230 1.21896 0.99922 0.97785 1.00827 1.21777 1.00262 1.01613 0.96236 0.90888 0.93042 0.93544 0.90369 0.93170 0.90627 0.83572 0.97642 0.94813 0.92652 0.94510 0.91804 0.91821 0.87902 0.91890 0.93070 0.93757 0.92540 0.92758 0.93643 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.98 6.26 -26.73 -0.17 -2.14 16 3 C 0.12 2.23 6.30 -4.04 -0.03 2.21 16 4 N -0.38 -7.81 3.69 -61.86 -0.23 -8.04 16 5 N -0.12 -2.63 13.93 60.35 0.84 -1.79 16 6 N -0.05 -1.13 13.38 60.35 0.81 -0.32 16 7 N -0.39 -8.80 11.17 30.10 0.34 -8.46 16 8 C 0.44 9.55 6.87 -320.41 -2.20 7.35 16 9 N -0.42 -8.92 3.76 -176.23 -0.66 -9.58 16 10 C 0.19 4.24 4.55 -4.98 -0.02 4.22 16 11 C -0.52 -11.76 6.07 -34.44 -0.21 -11.97 16 12 H 0.06 1.47 7.67 -52.49 -0.40 1.07 16 13 C 0.09 2.04 5.04 -17.82 -0.09 1.95 16 14 N -0.85 -18.75 11.16 55.43 0.62 -18.13 16 15 Si 0.88 18.06 29.54 -169.99 -5.02 13.04 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 C 0.09 1.70 4.37 -3.82 -0.02 1.68 16 20 C -0.11 -2.02 3.97 -26.73 -0.11 -2.13 16 21 C -0.10 -1.53 2.92 -90.62 -0.26 -1.79 16 22 C -0.15 -2.11 8.95 37.16 0.33 -1.78 16 23 C -0.14 -2.01 9.19 37.16 0.34 -1.66 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.15 2.92 4.63 -51.93 -0.24 2.68 16 31 H 0.01 0.12 7.81 -51.93 -0.41 -0.29 16 32 H 0.03 0.78 6.29 -51.93 -0.33 0.45 16 33 H 0.26 5.70 8.31 -40.82 -0.34 5.36 16 34 H 0.04 0.72 7.77 -51.93 -0.40 0.32 16 35 H 0.06 1.26 5.85 -51.93 -0.30 0.96 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 2.07 5.19 -51.93 -0.27 1.80 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.85 6.48 -51.93 -0.34 0.51 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -23.55 348.20 -7.44 -30.99 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.32 Total: 2.74 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.06 Total: -5.69 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 1.71 Total: -46.33 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -23.55 -7.44 -30.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262212227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.541 kcal (2) G-P(sol) polarization free energy of solvation -23.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds