Wall clock time and date at job start Tue Mar 31 2020 05:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99799 * 2 1 4 4 C 1.34777 * 120.00208 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99542 * 359.97438 * 4 2 1 6 6 C 1.50693 * 120.00209 * 179.97438 * 4 2 1 7 7 N 1.46901 * 109.47024 * 186.23940 * 6 4 2 8 8 C 1.48506 * 111.00277 * 65.91781 * 7 6 4 9 9 C 1.54889 * 103.21169 * 160.15445 * 8 7 6 10 10 C 1.54513 * 103.07970 * 322.57969 * 9 8 7 11 11 H 1.09004 * 111.69265 * 260.24372 * 10 9 8 12 12 C 1.47840 * 110.99756 * 183.33578 * 7 6 4 13 13 H 1.08995 * 111.65809 * 335.96159 * 12 7 6 14 14 C 1.54519 * 108.84952 * 100.58267 * 12 7 6 15 15 C 1.54899 * 103.07453 * 135.65894 * 14 12 7 16 16 N 1.47830 * 108.85484 * 135.65815 * 10 9 8 17 17 C 1.46900 * 111.00150 * 100.58370 * 16 10 9 18 18 C 1.50700 * 109.47303 * 170.00129 * 17 16 10 19 19 H 1.07997 * 119.99562 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00130 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00184 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46633 * 90.00098 * 22 20 18 24 24 H 1.48496 * 109.47077 * 209.99894 * 22 20 18 25 25 H 1.48491 * 109.47023 * 330.00078 * 22 20 18 26 26 H 1.09003 * 109.46659 * 240.00212 * 1 2 3 27 27 H 1.08998 * 109.47156 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47216 * 119.99775 * 1 2 3 29 29 H 1.08998 * 109.47027 * 269.99995 * 3 2 1 30 30 H 1.08996 * 109.47589 * 30.00563 * 3 2 1 31 31 H 1.09010 * 109.46912 * 150.00189 * 3 2 1 32 32 H 1.08996 * 109.47358 * 66.23604 * 6 4 2 33 33 H 1.09006 * 109.47431 * 306.23836 * 6 4 2 34 34 H 1.09004 * 110.67063 * 41.72296 * 8 7 6 35 35 H 1.09003 * 110.81351 * 278.65882 * 8 7 6 36 36 H 1.08999 * 110.69656 * 204.17715 * 9 8 7 37 37 H 1.09006 * 110.83979 * 81.04383 * 9 8 7 38 38 H 1.08997 * 110.69439 * 254.05882 * 14 12 7 39 39 H 1.08999 * 110.69560 * 17.09049 * 14 12 7 40 40 H 1.08999 * 110.66535 * 81.01061 * 15 14 12 41 41 H 1.08998 * 110.66844 * 204.14264 * 15 14 12 42 42 H 1.09003 * 109.46933 * 290.00522 * 17 16 10 43 43 H 1.08998 * 109.47205 * 50.00206 * 17 16 10 44 44 H 0.97001 * 120.00200 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1355 -2.5439 -0.1521 8 6 3.7790 -3.0924 -1.4854 9 6 4.7716 -4.2683 -1.6614 10 6 6.0711 -3.7273 -1.0242 11 1 6.7694 -3.3652 -1.7788 12 6 5.6112 -2.5926 -0.0772 13 1 6.0593 -1.6360 -0.3456 14 6 6.0241 -3.0593 1.3367 15 6 7.1410 -4.0941 1.0519 16 7 6.6614 -4.7824 -0.1735 17 6 7.7674 -5.4585 -0.8646 18 6 8.4984 -6.3481 0.1076 19 1 8.1735 -6.4058 1.1360 20 6 9.5811 -7.0891 -0.3159 21 7 10.2187 -7.8658 0.5324 22 14 10.1417 -6.9908 -2.0952 23 1 11.1440 -5.9045 -2.2390 24 1 10.7529 -8.2842 -2.4937 25 1 8.9740 -6.7057 -2.9670 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5137 -0.8899 29 1 2.3791 1.5834 -1.0276 30 1 1.6085 2.0284 0.5139 31 1 3.1500 1.1384 0.5139 32 1 4.0096 -0.7533 0.9393 33 1 4.0090 -0.5595 -0.8300 34 1 3.9289 -2.3428 -2.2624 35 1 2.7502 -3.4526 -1.4936 36 1 4.9236 -4.4893 -2.7178 37 1 4.4219 -5.1537 -1.1304 38 1 6.4123 -2.2242 1.9199 39 1 5.1833 -3.5271 1.8489 40 1 8.0909 -3.5933 0.8652 41 1 7.2323 -4.7989 1.8784 42 1 7.3709 -6.0615 -1.6816 43 1 8.4559 -4.7137 -1.2638 44 1 10.9808 -8.3869 0.2345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:22 Heat of formation + Delta-G solvation = 0.300426 kcal Electronic energy + Delta-G solvation = -22896.801271 eV Core-core repulsion = 19656.865751 eV Total energy + Delta-G solvation = -3239.935520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35548 -39.23323 -36.02305 -35.51679 -32.70025 -31.86815 -30.74520 -28.72089 -27.31756 -26.87594 -26.20483 -24.63479 -22.05911 -21.10745 -20.12532 -19.44111 -19.28366 -17.10124 -16.72424 -16.51412 -16.17008 -15.56487 -15.13296 -14.46886 -14.39544 -13.93236 -13.62402 -13.48778 -13.34985 -13.07991 -13.00795 -12.95749 -12.48026 -12.37697 -12.30989 -11.93854 -11.83188 -11.28616 -11.04018 -10.94775 -10.75533 -10.60106 -10.38067 -10.32997 -10.07837 -9.80251 -9.71615 -9.13215 -8.96919 -8.58047 -8.33985 -7.45728 -6.04145 -4.01984 2.50241 2.68107 3.28589 3.36689 3.39632 3.97374 4.32850 4.43171 4.62842 4.66652 4.90171 4.91303 4.95369 5.03321 5.04870 5.20601 5.26063 5.27191 5.30086 5.36558 5.46320 5.49819 5.53208 5.77089 5.83799 5.93099 6.07248 6.17049 6.26017 6.26879 6.36188 6.60436 6.64553 6.71959 6.86610 6.95027 7.05512 7.08486 7.21160 7.55482 7.95780 8.01111 8.05641 8.65542 9.03371 9.57563 11.08791 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040972 B = 0.003519 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.224838 B = 7954.020451 C = 8141.421601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.631 5.631 3 C 0.078 3.922 4 C 0.513 3.487 5 O -0.512 6.512 6 C 0.029 3.971 7 N -0.485 5.485 8 C 0.037 3.963 9 C -0.107 4.107 10 C 0.054 3.946 11 H 0.056 0.944 12 C 0.058 3.942 13 H 0.059 0.941 14 C -0.112 4.112 15 C 0.055 3.945 16 N -0.493 5.493 17 C 0.152 3.848 18 C -0.513 4.513 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.900 5.900 22 Si 0.875 3.125 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.085 0.915 42 H 0.030 0.970 43 H -0.017 1.017 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.325 21.023 -2.788 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.368 5.368 3 C -0.065 4.065 4 C 0.300 3.700 5 O -0.385 6.385 6 C -0.102 4.102 7 N -0.209 5.209 8 C -0.091 4.091 9 C -0.146 4.146 10 C -0.056 4.056 11 H 0.073 0.927 12 C -0.050 4.050 13 H 0.077 0.923 14 C -0.151 4.151 15 C -0.073 4.073 16 N -0.216 5.216 17 C 0.025 3.975 18 C -0.552 4.552 19 H 0.100 0.900 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.048 0.952 43 H 0.001 0.999 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.123 19.593 -2.232 25.472 hybrid contribution 1.488 1.338 -1.863 2.734 sum -14.635 20.931 -4.095 25.866 Atomic orbital electron populations 1.21575 0.79150 1.01953 1.02408 1.47832 1.07062 1.06424 1.75459 1.21838 0.97462 0.85352 1.01858 1.20629 0.90070 0.83068 0.76193 1.90714 1.69941 1.30654 1.47222 1.22199 0.92153 0.92899 1.02963 1.64746 1.09726 1.15713 1.30732 1.23332 1.01236 0.96333 0.88161 1.22496 0.93577 0.98584 0.99929 1.23218 0.96323 0.91436 0.94622 0.92657 1.23297 0.86848 0.97307 0.97587 0.92321 1.22577 0.99511 0.98288 0.94677 1.23002 0.94701 0.94782 0.94804 1.64883 1.30649 1.21905 1.04208 1.20366 0.87911 0.93720 0.95487 1.21097 1.12022 1.24202 0.97832 0.90008 1.24906 0.96238 0.94937 0.97168 1.69894 1.21150 1.28177 1.34683 0.86857 0.79207 0.77532 0.86153 1.20446 1.21152 1.19099 0.92123 0.90903 0.92237 0.92617 0.90925 0.90881 0.87890 0.92356 0.94943 0.89037 0.91896 0.89026 0.92324 0.89644 0.94296 0.89677 0.95156 0.99905 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.16 59.85 0.61 1.30 16 2 N -0.63 -5.63 3.27 -189.52 -0.62 -6.25 16 3 C 0.08 0.40 10.09 59.85 0.60 1.00 16 4 C 0.51 6.34 7.36 -10.99 -0.08 6.25 16 5 O -0.51 -8.45 14.81 5.56 0.08 -8.37 16 6 C 0.03 0.33 3.68 -4.98 -0.02 0.31 16 7 N -0.48 -7.08 4.47 -222.67 -0.99 -8.08 16 8 C 0.04 0.54 5.78 -1.94 -0.01 0.53 16 9 C -0.11 -1.77 6.75 -24.94 -0.17 -1.94 16 10 C 0.05 0.96 3.35 -65.47 -0.22 0.74 16 11 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 12 C 0.06 0.88 3.38 -65.46 -0.22 0.65 16 13 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 14 C -0.11 -1.77 6.75 -24.93 -0.17 -1.94 16 15 C 0.06 1.09 5.55 -1.93 -0.01 1.08 16 16 N -0.49 -10.61 4.87 -222.67 -1.08 -11.69 16 17 C 0.15 3.76 3.87 -4.98 -0.02 3.74 16 18 C -0.51 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.08 2.53 6.75 -52.49 -0.35 2.17 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 21 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 22 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.24 7.92 -51.93 -0.41 -0.17 16 31 H 0.07 0.32 6.61 -51.92 -0.34 -0.02 16 32 H 0.10 0.98 7.71 -51.93 -0.40 0.58 16 33 H 0.06 0.54 7.78 -51.93 -0.40 0.14 16 34 H 0.03 0.42 7.92 -51.93 -0.41 0.01 16 35 H 0.09 1.45 6.84 -51.93 -0.36 1.09 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.70 7.98 -51.93 -0.41 1.29 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 40 H 0.04 0.78 8.02 -51.93 -0.42 0.37 16 41 H 0.08 1.82 7.12 -51.93 -0.37 1.45 16 42 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 43 H -0.02 -0.41 7.31 -51.93 -0.38 -0.79 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -33.99 340.40 -9.04 -43.03 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.54 Total: -2.48 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.12 Total: -1.37 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -1.93 Total: -53.01 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.99 -9.04 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.332 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds