Wall clock time and date at job start Tue Mar 31 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99972 * 2 1 4 4 C 1.34779 * 119.99986 * 180.02562 * 2 1 3 5 5 O 1.21282 * 120.00008 * 359.97438 * 4 2 1 6 6 C 1.50693 * 119.99918 * 179.97438 * 4 2 1 7 7 N 1.46897 * 109.47271 * 179.97438 * 6 4 2 8 8 C 1.46957 * 110.99927 * 294.80320 * 7 6 4 9 9 C 1.53773 * 108.96525 * 180.22527 * 8 7 6 10 10 H 1.08998 * 112.32881 * 187.41721 * 9 8 7 11 11 C 1.54707 * 107.62860 * 311.68222 * 9 8 7 12 12 C 1.54328 * 104.72252 * 87.28314 * 11 9 8 13 13 C 1.57558 * 104.49543 * 0.34807 * 12 11 9 14 14 H 1.09000 * 113.01888 * 148.26399 * 13 12 11 15 15 C 1.46957 * 111.00215 * 169.99684 * 7 6 4 16 16 N 1.48847 * 103.62281 * 25.50943 * 13 12 11 17 17 C 1.46902 * 110.98555 * 76.53726 * 16 13 12 18 18 C 1.50695 * 109.47083 * 56.00693 * 17 16 13 19 19 H 1.07997 * 120.00298 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99707 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00265 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99917 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47133 * 60.00285 * 22 20 18 24 24 H 1.48503 * 109.47105 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47310 * 300.00566 * 22 20 18 26 26 H 1.09010 * 109.46936 * 270.00210 * 1 2 3 27 27 H 1.08999 * 109.47355 * 29.99435 * 1 2 3 28 28 H 1.08998 * 109.47602 * 150.00051 * 1 2 3 29 29 H 1.09003 * 109.47154 * 270.00038 * 3 2 1 30 30 H 1.09005 * 109.46955 * 30.00047 * 3 2 1 31 31 H 1.09001 * 109.47305 * 150.00240 * 3 2 1 32 32 H 1.08997 * 109.47506 * 59.99267 * 6 4 2 33 33 H 1.09009 * 109.47257 * 299.99530 * 6 4 2 34 34 H 1.08996 * 109.55546 * 300.07615 * 8 7 6 35 35 H 1.09003 * 109.55273 * 60.38565 * 8 7 6 36 36 H 1.08997 * 110.38292 * 206.08762 * 11 9 8 37 37 H 1.08990 * 110.38511 * 328.46752 * 11 9 8 38 38 H 1.08996 * 110.39096 * 118.80598 * 12 11 9 39 39 H 1.09007 * 110.38146 * 241.18772 * 12 11 9 40 40 H 1.09002 * 109.55636 * 299.61750 * 15 7 6 41 41 H 1.08997 * 109.55447 * 59.82486 * 15 7 6 42 42 H 1.09001 * 109.47072 * 176.01299 * 17 16 13 43 43 H 1.09005 * 109.46706 * 296.01000 * 17 16 13 44 44 H 0.96998 * 119.99849 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6458 -1.1672 -0.0011 7 7 4.1355 -2.5521 -0.0010 8 6 3.7689 -3.2402 1.2447 9 6 4.3077 -4.6797 1.1977 10 1 3.9575 -5.2806 2.0370 11 6 3.9079 -5.2852 -0.1687 12 6 5.0494 -4.8816 -1.1256 13 6 6.0497 -4.0641 -0.2236 14 1 7.0891 -4.1723 -0.5337 15 6 5.5848 -2.5984 -0.2398 16 7 5.7925 -4.5856 1.1466 17 6 6.4104 -5.9054 1.3318 18 6 7.8846 -5.8163 1.0322 19 1 8.3192 -4.8736 0.7344 20 6 8.6786 -6.9386 1.1382 21 7 8.1494 -8.0868 1.5004 22 14 10.5062 -6.8281 0.7675 23 1 11.1401 -5.8517 1.6895 24 1 11.1305 -8.1626 0.9534 25 1 10.7006 -6.3822 -0.6356 26 1 -0.3633 0.0000 1.0278 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 2.3791 1.5834 -1.0277 30 1 1.6083 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0095 -0.6535 0.8887 33 1 4.0088 -0.6532 -0.8912 34 1 4.2057 -2.7147 2.0939 35 1 2.6837 -3.2600 1.3448 36 1 3.8384 -6.3706 -0.0972 37 1 2.9614 -4.8647 -0.5079 38 1 5.5416 -5.7683 -1.5250 39 1 4.6644 -4.2623 -1.9359 40 1 5.8090 -2.1552 -1.2102 41 1 6.1014 -2.0431 0.5430 42 1 6.2680 -6.2319 2.3620 43 1 5.9449 -6.6226 0.6557 44 1 8.7080 -8.8763 1.5746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:24 Heat of formation + Delta-G solvation = 0.751922 kcal Electronic energy + Delta-G solvation = -23422.457376 eV Core-core repulsion = 20182.541435 eV Total energy + Delta-G solvation = -3239.915942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34771 -39.29299 -35.76438 -35.07319 -32.76500 -30.61413 -30.16154 -29.35460 -27.77733 -26.56143 -25.46929 -23.95903 -23.31324 -21.31241 -19.80047 -19.31760 -18.16948 -17.07269 -16.41997 -16.20891 -15.95183 -15.58203 -14.92824 -14.42172 -14.15997 -13.77065 -13.55722 -13.25229 -13.16404 -13.03754 -12.92878 -12.78149 -12.36458 -12.20590 -12.02788 -11.70449 -11.58609 -11.36637 -10.99581 -10.79905 -10.55078 -10.46406 -10.16262 -9.95688 -9.73132 -9.59250 -9.51827 -8.99705 -8.85851 -8.43716 -7.96042 -7.30916 -5.99212 -4.00354 2.59944 2.78140 3.34523 3.38868 3.41140 4.14664 4.44979 4.47112 4.76180 4.96949 4.97774 5.08477 5.15448 5.21970 5.33588 5.36032 5.37593 5.43537 5.58946 5.62734 5.70873 5.78625 5.84152 5.93581 6.13817 6.24509 6.29367 6.33742 6.48103 6.64447 6.70399 6.75632 6.82227 7.01785 7.06088 7.29635 7.35795 7.49541 7.54731 7.77744 8.05241 8.15913 8.28965 8.57530 9.06732 9.63141 11.12015 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038583 B = 0.003919 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.541730 B = 7142.632685 C = 7487.120836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.631 5.631 3 C 0.078 3.922 4 C 0.513 3.487 5 O -0.514 6.514 6 C 0.040 3.960 7 N -0.517 5.517 8 C 0.068 3.932 9 C 0.058 3.942 10 H 0.086 0.914 11 C -0.129 4.129 12 C -0.127 4.127 13 C 0.070 3.930 14 H 0.110 0.890 15 C 0.067 3.933 16 N -0.506 5.506 17 C 0.183 3.817 18 C -0.511 4.511 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.028 0.972 43 H 0.000 1.000 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 18.585 -4.072 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.368 5.368 3 C -0.065 4.065 4 C 0.301 3.699 5 O -0.388 6.388 6 C -0.092 4.092 7 N -0.242 5.242 8 C -0.060 4.060 9 C -0.051 4.051 10 H 0.104 0.896 11 C -0.168 4.168 12 C -0.166 4.166 13 C -0.039 4.039 14 H 0.127 0.873 15 C -0.060 4.060 16 N -0.229 5.229 17 C 0.057 3.943 18 C -0.549 4.549 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.018 0.982 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.456 17.903 -3.956 22.165 hybrid contribution 1.087 -0.041 -0.106 1.092 sum -11.369 17.862 -4.061 21.559 Atomic orbital electron populations 1.21584 0.79380 1.02959 1.01638 1.47817 1.07006 1.06472 1.75463 1.21804 0.97395 0.85391 1.01902 1.20755 0.90308 0.83015 0.75813 1.90677 1.69988 1.30590 1.47529 1.21951 0.91737 0.92954 1.02523 1.61658 1.14341 1.11305 1.36942 1.22398 1.00620 0.94422 0.88576 1.23085 0.90686 0.94280 0.97070 0.89622 1.22611 0.99209 0.99120 0.95856 1.23098 0.95919 0.99350 0.98280 1.23628 0.99252 0.91576 0.89487 0.87265 1.22347 0.85774 0.98250 0.99668 1.65681 1.04708 1.27910 1.24575 1.19772 0.93993 0.83933 0.96608 1.21134 0.92878 0.95126 1.45781 0.92099 1.24974 0.98660 0.95349 0.95458 1.69953 1.35828 0.99875 1.47907 0.86607 0.85230 0.77045 0.78786 1.20243 1.21385 1.20282 0.92983 0.91531 0.90504 0.92507 0.91096 0.90842 0.92306 0.88299 0.95151 0.89512 0.93152 0.91120 0.92628 0.92008 0.91345 0.94328 0.95399 0.98247 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.44 59.85 0.62 1.34 16 2 N -0.63 -6.04 3.27 -189.51 -0.62 -6.66 16 3 C 0.08 0.45 10.24 59.85 0.61 1.06 16 4 C 0.51 6.66 7.40 -10.99 -0.08 6.58 16 5 O -0.51 -8.67 13.82 5.56 0.08 -8.59 16 6 C 0.04 0.48 4.01 -4.98 -0.02 0.46 16 7 N -0.52 -8.09 3.38 -234.97 -0.79 -8.89 16 8 C 0.07 1.17 4.65 -3.39 -0.02 1.15 16 9 C 0.06 1.16 3.70 -65.32 -0.24 0.92 16 10 H 0.09 1.71 8.13 -51.93 -0.42 1.28 16 11 C -0.13 -2.50 5.42 -25.14 -0.14 -2.64 16 12 C -0.13 -2.46 5.58 -23.55 -0.13 -2.59 16 13 C 0.07 1.39 3.52 -63.74 -0.22 1.17 16 14 H 0.11 2.34 6.25 -51.93 -0.32 2.02 16 15 C 0.07 1.08 5.06 -3.39 -0.02 1.07 16 16 N -0.51 -11.28 5.15 -212.10 -1.09 -12.37 16 17 C 0.18 4.86 4.70 -4.98 -0.02 4.84 16 18 C -0.51 -14.36 8.33 -34.44 -0.29 -14.65 16 19 H 0.06 1.67 6.58 -52.49 -0.35 1.33 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 28 H 0.08 0.76 7.42 -51.93 -0.39 0.38 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.07 0.39 6.44 -51.93 -0.33 0.05 16 32 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 33 H 0.10 0.97 8.04 -51.92 -0.42 0.56 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.53 5.82 -51.93 -0.30 1.23 16 36 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 37 H 0.07 1.35 7.82 -51.93 -0.41 0.95 16 38 H 0.05 1.16 8.12 -51.93 -0.42 0.73 16 39 H 0.06 1.10 7.85 -51.92 -0.41 0.69 16 40 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.00 -0.01 6.74 -51.93 -0.35 -0.36 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -32.86 336.05 -9.11 -41.97 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.42 Total: -1.22 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.04 Total: 0.23 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -1.77 Total: -54.14 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.86 -9.11 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.721 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds