Wall clock time and date at job start Tue Mar 31 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00628 * 2 1 4 4 C 1.34774 * 119.99544 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00472 * 0.02562 * 4 2 1 6 6 C 1.50706 * 120.00020 * 180.02562 * 4 2 1 7 7 N 1.46893 * 109.47176 * 180.02562 * 6 4 2 8 8 C 1.47656 * 110.99870 * 265.63847 * 7 6 4 9 9 C 1.53671 * 88.18122 * 222.20960 * 8 7 6 10 10 C 1.46583 * 111.00091 * 170.00028 * 7 6 4 11 11 C 1.53117 * 121.15428 * 11.65929 * 10 7 6 12 12 N 1.48119 * 85.89800 * 211.59544 * 11 10 7 13 13 C 1.46899 * 111.00311 * 137.02695 * 12 11 10 14 14 C 1.53000 * 109.47156 * 90.41924 * 13 12 11 15 15 C 1.50702 * 109.47521 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99468 * 0.02562 * 15 14 13 17 17 C 1.37866 * 120.00198 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00394 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47302 * 89.99687 * 19 17 15 21 21 H 1.48501 * 109.47091 * 210.00106 * 19 17 15 22 22 H 1.48500 * 109.46830 * 329.99594 * 19 17 15 23 23 C 1.48130 * 90.95322 * 24.05485 * 12 11 10 24 24 H 1.08992 * 109.47635 * 240.00409 * 1 2 3 25 25 H 1.09004 * 109.47181 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47366 * 119.99761 * 1 2 3 27 27 H 1.08997 * 109.47477 * 270.00204 * 3 2 1 28 28 H 1.09004 * 109.46971 * 29.99775 * 3 2 1 29 29 H 1.08993 * 109.47768 * 149.99839 * 3 2 1 30 30 H 1.09001 * 109.46953 * 299.99667 * 6 4 2 31 31 H 1.09000 * 109.47318 * 59.99264 * 6 4 2 32 32 H 1.09003 * 113.43616 * 337.04149 * 8 7 6 33 33 H 1.09004 * 113.44102 * 107.37645 * 8 7 6 34 34 H 1.08997 * 114.21390 * 271.67915 * 9 8 7 35 35 H 1.08999 * 114.39638 * 138.83923 * 9 8 7 36 36 H 1.09004 * 113.80334 * 325.83875 * 11 10 7 37 37 H 1.08999 * 113.80565 * 97.34660 * 11 10 7 38 38 H 1.09000 * 109.47802 * 210.42225 * 13 12 11 39 39 H 1.09002 * 109.46861 * 330.42273 * 13 12 11 40 40 H 1.08994 * 109.47605 * 300.00465 * 14 13 12 41 41 H 1.09002 * 109.46951 * 60.00404 * 14 13 12 42 42 H 0.96994 * 120.00201 * 180.02562 * 18 17 15 43 43 H 1.08995 * 113.80717 * 221.69684 * 23 12 11 44 44 H 1.09000 * 113.80158 * 90.18548 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1387 -1.1672 0.0005 5 8 1.5323 -2.2175 0.0005 6 6 3.6458 -1.1674 0.0011 7 7 4.1353 -2.5523 0.0010 8 6 4.4100 -3.0166 1.3755 9 6 5.6959 -3.6699 0.8455 10 6 5.5811 -2.5984 -0.2361 11 6 6.4335 -1.3276 -0.1830 12 7 7.2810 -1.9808 -1.2072 13 6 7.6599 -1.0304 -2.2613 14 6 8.9770 -0.3492 -1.8844 15 6 9.3655 0.6263 -2.9655 16 1 8.7356 0.7485 -3.8342 17 6 10.5248 1.3626 -2.8454 18 7 11.2916 1.2142 -1.7873 19 14 11.0060 2.5723 -4.1851 20 1 10.4230 3.9041 -3.8822 21 1 12.4857 2.6817 -4.2452 22 1 10.4916 2.0927 -5.4931 23 6 6.1467 -2.8293 -1.6402 24 1 -0.3634 -0.5137 0.8899 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.3793 1.5833 -1.0276 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0095 -0.6538 -0.8889 31 1 4.0089 -0.6533 0.8910 32 1 4.5944 -2.2044 2.0787 33 1 3.6786 -3.7357 1.7446 34 1 5.5626 -4.6886 0.4815 35 1 6.5612 -3.5554 1.4983 36 1 5.9179 -0.4367 -0.5416 37 1 6.9364 -1.1747 0.7719 38 1 7.7832 -1.5634 -3.2040 39 1 6.8792 -0.2773 -2.3691 40 1 8.8538 0.1838 -0.9417 41 1 9.7576 -1.1023 -1.7766 42 1 12.1071 1.7325 -1.7027 43 1 6.4226 -3.8649 -1.8387 44 1 5.5452 -2.3877 -2.4348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277942780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:20 Heat of formation + Delta-G solvation = 48.885100 kcal Electronic energy + Delta-G solvation = -22566.350393 eV Core-core repulsion = 19328.521663 eV Total energy + Delta-G solvation = -3237.828731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46559 -39.64085 -37.13276 -35.65610 -33.30736 -31.52148 -30.51115 -28.40000 -26.72770 -26.57103 -26.08660 -24.36590 -23.74280 -21.70986 -20.25046 -19.51615 -18.02990 -17.18493 -16.59169 -16.38745 -16.31832 -15.66483 -15.52374 -15.02524 -14.53190 -14.25394 -13.95939 -13.61438 -13.39058 -13.01240 -12.95395 -12.69604 -12.59461 -12.29014 -12.23940 -12.05070 -11.80226 -11.47951 -11.42648 -11.16647 -10.94695 -10.84602 -10.59398 -10.25340 -9.88248 -9.80789 -9.38155 -9.11981 -8.93572 -8.84788 -8.37291 -8.27044 -6.01540 -4.04643 2.50810 2.70189 3.29434 3.36153 3.39376 3.76021 4.21079 4.33281 4.47163 4.48023 4.49293 4.76293 4.82676 4.96714 5.01922 5.03846 5.12846 5.19303 5.29930 5.34177 5.36278 5.39770 5.51314 5.57597 5.64856 5.72091 5.79135 5.91020 6.01524 6.05840 6.10082 6.17005 6.24200 6.36507 6.79526 6.86391 7.02471 7.12939 7.41211 7.71821 7.85984 8.05240 8.05496 8.40178 9.02877 9.59301 11.09690 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.003789 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.674993 B = 7387.461773 C = 8465.253621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.630 5.630 3 C 0.075 3.925 4 C 0.517 3.483 5 O -0.518 6.518 6 C 0.001 3.999 7 N -0.440 5.440 8 C 0.001 3.999 9 C -0.110 4.110 10 C 0.026 3.974 11 C 0.006 3.994 12 N -0.469 5.469 13 C 0.031 3.969 14 C 0.034 3.966 15 C -0.524 4.524 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.022 3.978 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.014 0.986 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.090 0.910 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -2.451 7.093 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.366 5.366 3 C -0.068 4.068 4 C 0.304 3.696 5 O -0.392 6.392 6 C -0.131 4.131 7 N -0.161 5.161 8 C -0.127 4.127 9 C -0.148 4.148 10 C -0.065 4.065 11 C -0.124 4.124 12 N -0.192 5.192 13 C -0.097 4.097 14 C -0.004 4.004 15 C -0.563 4.563 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.108 4.108 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.578 -3.588 6.890 20.137 hybrid contribution 0.107 2.079 -0.657 2.183 sum -18.471 -1.509 6.233 19.552 Atomic orbital electron populations 1.21574 0.79171 1.02063 1.02267 1.47833 1.07076 1.06522 1.75186 1.21891 0.97414 0.85152 1.02351 1.20554 0.89875 0.83070 0.76116 1.90689 1.69951 1.30816 1.47709 1.22617 0.92771 0.94009 1.03667 1.68607 1.13699 1.16486 1.17317 1.23848 0.97780 1.00038 0.91066 1.22811 0.97442 0.98275 0.96284 1.24094 0.87318 0.97430 0.97701 1.24185 0.93988 0.94761 0.99503 1.68572 1.25303 1.15411 1.09918 1.22856 1.00185 0.93160 0.93482 1.18960 0.90273 0.94699 0.96441 1.21206 1.07028 1.22349 1.05685 0.92866 1.24992 0.96407 0.97164 0.95698 1.69976 1.13913 1.41235 1.28033 0.86609 0.77686 0.81458 0.82331 1.20713 1.21154 1.19883 1.23792 0.91940 1.00393 0.94660 0.92286 0.90782 0.92201 0.92182 0.90812 0.90815 0.87981 0.90521 0.91405 0.89472 0.88531 0.89678 0.91059 0.89264 0.92071 0.95387 0.96762 0.95745 0.92981 0.89151 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.16 59.84 0.61 1.37 16 2 N -0.63 -6.27 3.27 -189.53 -0.62 -6.89 16 3 C 0.08 0.52 10.21 59.84 0.61 1.13 16 4 C 0.52 6.71 7.74 -10.98 -0.09 6.62 16 5 O -0.52 -8.66 16.43 5.56 0.09 -8.57 16 6 C 0.00 0.01 2.90 -4.98 -0.01 0.00 16 7 N -0.44 -5.88 5.84 -238.38 -1.39 -7.27 16 8 C 0.00 0.01 7.72 -8.96 -0.07 -0.05 16 9 C -0.11 -1.29 8.22 -26.55 -0.22 -1.51 16 10 C 0.03 0.35 1.31 -141.94 -0.19 0.16 16 11 C 0.01 0.09 6.83 -3.09 -0.02 0.07 16 12 N -0.47 -8.42 6.16 -243.10 -1.50 -9.92 16 13 C 0.03 0.65 4.73 -3.82 -0.02 0.63 16 14 C 0.03 0.88 5.28 -27.88 -0.15 0.73 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 23 C 0.02 0.33 7.83 -3.08 -0.02 0.30 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.40 7.80 -51.93 -0.40 -0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 29 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 30 H 0.10 1.19 6.97 -51.93 -0.36 0.83 16 31 H 0.08 0.76 6.45 -51.93 -0.33 0.43 16 32 H 0.07 0.69 7.41 -51.93 -0.38 0.30 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.03 5.85 -51.93 -0.30 0.73 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 39 H 0.03 0.56 7.38 -51.93 -0.38 0.18 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -33.77 353.05 -9.88 -43.64 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.52 Total: -2.68 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.03 Total: -4.04 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -2.77 Total: -50.10 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.77 -9.88 -43.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277942780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.529 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds