Wall clock time and date at job start Tue Mar 31 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99732 * 2 1 4 4 C 1.34778 * 120.00122 * 179.72094 * 2 1 3 5 5 O 1.21281 * 119.99746 * 0.02562 * 4 2 1 6 6 C 1.50695 * 120.00005 * 180.02562 * 4 2 1 7 7 N 1.46899 * 109.47164 * 175.29295 * 6 4 2 8 8 C 1.47363 * 111.00002 * 171.09927 * 7 6 4 9 9 C 1.54007 * 108.18652 * 170.63834 * 8 7 6 10 10 H 1.09000 * 115.21495 * 153.91896 * 9 8 7 11 11 C 1.54258 * 110.81118 * 288.20097 * 9 8 7 12 12 C 1.54261 * 84.60837 * 79.44250 * 11 9 8 13 13 H 1.08993 * 116.05027 * 147.38384 * 12 11 9 14 14 C 1.47359 * 111.00083 * 294.51961 * 7 6 4 15 15 N 1.48564 * 110.22028 * 20.17414 * 9 8 7 16 16 C 1.46905 * 111.00201 * 33.11871 * 15 9 8 17 17 C 1.52995 * 109.47024 * 216.04996 * 16 15 9 18 18 C 1.50697 * 109.47106 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00045 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00351 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46828 * 90.00720 * 22 20 18 24 24 H 1.48502 * 109.46861 * 210.00258 * 22 20 18 25 25 H 1.48490 * 109.47289 * 330.00321 * 22 20 18 26 26 H 1.08996 * 109.47455 * 270.28122 * 1 2 3 27 27 H 1.09000 * 109.47155 * 30.27820 * 1 2 3 28 28 H 1.08997 * 109.47128 * 150.27578 * 1 2 3 29 29 H 1.09000 * 109.46951 * 269.72308 * 3 2 1 30 30 H 1.08994 * 109.47077 * 29.71949 * 3 2 1 31 31 H 1.08995 * 109.46855 * 149.72247 * 3 2 1 32 32 H 1.08994 * 109.47272 * 295.29473 * 6 4 2 33 33 H 1.09005 * 109.47177 * 55.29368 * 6 4 2 34 34 H 1.08994 * 109.71936 * 290.30904 * 8 7 6 35 35 H 1.08996 * 109.72180 * 50.96819 * 8 7 6 36 36 H 1.08999 * 114.01451 * 325.52941 * 11 9 8 37 37 H 1.09006 * 114.01116 * 193.35475 * 11 9 8 38 38 H 1.08997 * 109.72580 * 309.03726 * 14 7 6 39 39 H 1.09008 * 109.72054 * 69.69267 * 14 7 6 40 40 H 1.08994 * 109.46944 * 336.05087 * 16 15 9 41 41 H 1.09000 * 109.47127 * 96.05289 * 16 15 9 42 42 H 1.09003 * 109.47234 * 299.99923 * 17 16 15 43 43 H 1.09000 * 109.46929 * 60.00172 * 17 16 15 44 44 H 0.96991 * 119.99702 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0057 5 8 1.5325 -2.2175 0.0103 6 6 3.6459 -1.1671 0.0063 7 7 4.1355 -2.5469 0.1265 8 6 5.5931 -2.6100 -0.0811 9 6 6.0705 -4.0266 0.2891 10 1 6.9825 -4.3544 -0.2098 11 6 6.0190 -4.2409 1.8158 12 6 4.5104 -4.4672 1.5868 13 1 4.0264 -5.1796 2.2547 14 6 3.7728 -3.1240 1.4330 15 7 4.9298 -4.9779 0.2561 16 6 3.9604 -4.6017 -0.7816 17 6 2.5437 -4.9058 -0.2904 18 6 1.5493 -4.5193 -1.3547 19 1 1.8933 -4.0993 -2.2883 20 6 0.2002 -4.7030 -1.1370 21 7 -0.2188 -5.2149 -0.0003 22 14 -1.0324 -4.2246 -2.4566 23 1 -1.2724 -5.3838 -3.3532 24 1 -2.3103 -3.8206 -1.8171 25 1 -0.4945 -3.0894 -3.2483 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3633 -0.8924 -0.5095 29 1 2.3834 1.5810 -1.0277 30 1 1.6062 2.0296 0.5094 31 1 3.1477 1.1397 0.5181 32 1 4.0096 -0.7324 -0.9247 33 1 4.0089 -0.5781 0.8485 34 1 5.8249 -2.4052 -1.1262 35 1 6.0875 -1.8771 0.5564 36 1 6.2504 -3.3483 2.3971 37 1 6.5536 -5.1273 2.1576 38 1 4.0740 -2.4457 2.2312 39 1 2.6961 -3.2887 1.4762 40 1 4.0506 -3.5365 -0.9940 41 1 4.1603 -5.1714 -1.6892 42 1 2.4536 -5.9711 -0.0780 43 1 2.3438 -4.3361 0.6172 44 1 -1.1678 -5.3437 0.1530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277943346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:26 Heat of formation + Delta-G solvation = 105.506092 kcal Electronic energy + Delta-G solvation = -24814.842608 eV Core-core repulsion = 21579.469148 eV Total energy + Delta-G solvation = -3235.373460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63858 -39.03804 -35.23408 -34.56363 -33.03274 -30.74054 -29.77524 -28.96435 -27.23177 -26.67318 -25.17514 -23.14150 -22.54551 -22.26616 -20.06346 -18.79645 -17.84217 -16.64764 -16.27796 -15.93866 -15.63683 -15.40874 -14.96043 -14.53044 -14.21318 -13.89687 -13.51702 -13.14359 -12.78198 -12.54346 -12.46845 -12.34829 -11.97773 -11.77955 -11.71569 -11.67428 -11.56399 -11.10913 -11.01183 -10.71128 -10.67965 -10.24025 -10.05722 -9.80711 -9.45114 -8.97838 -8.84679 -8.56853 -8.34973 -8.18474 -7.84087 -6.57538 -5.54448 -3.44210 3.28477 3.34992 3.51666 3.56987 3.60620 4.04007 4.63273 4.76324 4.84417 4.87321 5.02103 5.10101 5.28397 5.32027 5.43949 5.50186 5.57120 5.60511 5.64235 5.65050 5.72031 5.80036 5.86541 5.89425 6.01791 6.03044 6.22246 6.25207 6.36603 6.57015 6.61553 6.86796 7.06362 7.17485 7.24222 7.71357 7.81613 7.82194 7.90842 8.23259 8.49918 8.57884 8.96580 8.98615 9.55157 10.11482 11.59684 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.009298 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.871121 B = 3010.669418 C = 4499.780870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.638 5.638 3 C 0.085 3.915 4 C 0.473 3.527 5 O -0.420 6.420 6 C 0.027 3.973 7 N -0.470 5.470 8 C 0.033 3.967 9 C 0.013 3.987 10 H 0.103 0.897 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.104 0.896 14 C 0.028 3.972 15 N -0.462 5.462 16 C -0.046 4.046 17 C 0.029 3.971 18 C -0.454 4.454 19 H 0.038 0.962 20 C 0.066 3.934 21 N -0.902 5.902 22 Si 0.874 3.126 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.281 1.281 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.028 0.972 42 H -0.009 1.009 43 H 0.046 0.954 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.508 14.126 3.743 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.378 5.378 3 C -0.059 4.059 4 C 0.258 3.742 5 O -0.286 6.286 6 C -0.103 4.103 7 N -0.193 5.193 8 C -0.096 4.096 9 C -0.097 4.097 10 H 0.120 0.880 11 C -0.179 4.179 12 C -0.075 4.075 13 H 0.122 0.878 14 C -0.099 4.099 15 N -0.184 5.184 16 C -0.173 4.173 17 C -0.008 4.008 18 C -0.494 4.494 19 H 0.056 0.944 20 C -0.132 4.132 21 N -0.544 5.544 22 Si 0.704 3.296 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.206 1.206 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.046 0.954 42 H 0.009 0.991 43 H 0.064 0.936 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.865 12.444 3.321 16.224 hybrid contribution -0.686 1.753 -0.268 1.901 sum 9.179 14.197 3.053 17.179 Atomic orbital electron populations 1.21488 0.79624 1.02790 1.01146 1.47751 1.06578 1.05915 1.77566 1.21649 0.96963 0.86255 1.01069 1.20640 0.89844 0.84078 0.79670 1.91236 1.68368 1.27930 1.41018 1.22184 0.94237 0.91813 1.02078 1.64081 1.10914 1.14205 1.30128 1.22778 0.87930 0.97234 1.01683 1.23934 0.98307 0.91104 0.96354 0.87952 1.23737 0.97454 1.01198 0.95472 1.23698 0.93738 0.94849 0.95226 0.87789 1.23410 1.05082 0.94152 0.87222 1.69513 1.06414 1.39854 1.02610 1.24606 0.93809 1.06324 0.92511 1.19348 0.88389 0.95109 0.97941 1.20814 0.90786 1.37518 1.00254 0.94363 1.24694 0.97843 0.96082 0.94595 1.69946 1.13502 1.47353 1.23633 0.86907 0.81689 0.78333 0.82702 1.21680 1.21910 1.20648 0.93509 0.92364 0.90136 0.93338 0.91772 0.91678 0.88670 0.93135 0.89936 0.94132 0.92384 0.89348 0.95648 0.85179 0.83305 0.95357 0.99112 0.93642 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 10.43 59.85 0.62 1.99 16 2 N -0.64 -9.39 3.27 -189.52 -0.62 -10.01 16 3 C 0.08 0.81 10.27 59.85 0.61 1.43 16 4 C 0.47 8.52 7.37 -10.99 -0.08 8.44 16 5 O -0.42 -9.92 10.16 5.56 0.06 -9.87 16 6 C 0.03 0.40 4.11 -4.98 -0.02 0.38 16 7 N -0.47 -7.96 0.94 -233.98 -0.22 -8.18 16 8 C 0.03 0.45 4.74 -3.04 -0.01 0.44 16 9 C 0.01 0.20 5.43 -66.53 -0.36 -0.16 16 10 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 11 C -0.14 -1.99 7.54 -25.66 -0.19 -2.19 16 12 C 0.03 0.63 4.46 -66.53 -0.30 0.34 16 13 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 14 C 0.03 0.51 3.97 -3.05 -0.01 0.50 16 15 N -0.46 -9.20 6.49 -232.18 -1.51 -10.71 16 16 C -0.05 -1.06 4.81 -3.82 -0.02 -1.08 16 17 C 0.03 0.80 3.83 -27.89 -0.11 0.69 16 18 C -0.45 -13.57 6.91 -34.44 -0.24 -13.81 16 19 H 0.04 1.16 7.74 -52.49 -0.41 0.75 16 20 C 0.07 2.00 5.15 -17.82 -0.09 1.91 16 21 N -0.90 -28.69 13.29 55.43 0.74 -27.95 16 22 Si 0.87 23.45 29.54 -169.99 -5.02 18.43 16 23 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.67 8.07 -51.93 -0.42 0.26 16 28 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.06 0.54 6.31 -51.93 -0.33 0.21 16 32 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 33 H 0.05 0.61 7.04 -51.93 -0.37 0.24 16 34 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 35 H 0.04 0.47 8.04 -51.93 -0.42 0.06 16 36 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.40 7.97 -51.93 -0.41 -0.01 16 39 H 0.13 2.94 4.16 -51.92 -0.22 2.72 16 40 H 0.15 3.30 3.45 -110.39 -0.38 2.92 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 16 43 H 0.05 1.27 3.14 -51.93 -0.16 1.11 16 44 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -35.56 324.98 -9.14 -44.70 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.27 Total: -0.20 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.20 Total: -1.12 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -1.61 Total: -56.85 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.06 Total: -9.87 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.56 -9.14 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.206 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds