Wall clock time and date at job start Tue Mar 31 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00238 * 2 1 4 4 O 1.21584 * 119.99860 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00416 * 179.97438 * 3 2 1 6 6 C 1.46505 * 120.00321 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.49881 * 35.08016 * 6 5 3 8 8 C 1.53117 * 109.50003 * 275.00283 * 6 5 3 9 9 C 1.53126 * 109.15988 * 182.40042 * 8 6 5 10 10 C 1.53043 * 109.27177 * 57.65642 * 9 8 6 11 11 N 1.46847 * 109.52396 * 300.81780 * 10 9 8 12 12 C 1.46901 * 111.00100 * 185.84246 * 11 10 9 13 13 C 1.53002 * 109.47066 * 75.84070 * 12 11 10 14 14 C 1.50700 * 115.54989 * 54.24350 * 13 12 11 15 15 H 1.08000 * 120.00293 * 215.54422 * 14 13 12 16 16 C 1.37883 * 119.99648 * 35.54230 * 14 13 12 17 17 N 1.31513 * 120.00260 * 12.03086 * 16 14 13 18 18 Si 1.86798 * 119.99900 * 192.02504 * 16 14 13 19 19 H 1.48498 * 109.47046 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47188 * 300.00585 * 18 16 14 21 21 H 1.48503 * 109.46931 * 60.00220 * 18 16 14 22 22 C 1.52999 * 117.49869 * 199.91922 * 13 12 11 23 23 C 1.52997 * 117.49838 * 268.57888 * 13 12 11 24 24 C 1.46848 * 111.19479 * 61.74577 * 11 10 9 25 25 H 1.08998 * 109.46977 * 299.99748 * 1 2 3 26 26 H 1.08999 * 109.46970 * 60.00002 * 1 2 3 27 27 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00362 * 180.02562 * 2 1 3 29 29 H 0.97004 * 119.99652 * 0.02562 * 5 3 2 30 30 H 1.09004 * 109.52785 * 62.49908 * 8 6 5 31 31 H 1.08999 * 109.57883 * 302.33729 * 8 6 5 32 32 H 1.08993 * 109.50284 * 297.71915 * 9 8 6 33 33 H 1.08994 * 109.50466 * 177.59288 * 9 8 6 34 34 H 1.09004 * 109.45509 * 180.80877 * 10 9 8 35 35 H 1.08992 * 109.46429 * 60.83811 * 10 9 8 36 36 H 1.09005 * 109.46910 * 315.84020 * 12 11 10 37 37 H 1.08992 * 109.47022 * 195.83929 * 12 11 10 38 38 H 0.96996 * 120.00564 * 174.97683 * 17 16 14 39 39 H 1.08999 * 117.49687 * 215.00730 * 22 13 12 40 40 H 1.08999 * 117.49589 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.50081 * 359.97259 * 23 13 12 42 42 H 1.09006 * 117.50103 * 144.99694 * 23 13 12 43 43 H 1.09003 * 109.46134 * 58.27724 * 24 11 10 44 44 H 1.09001 * 109.45759 * 178.24068 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4360 0.0011 7 1 3.6727 3.1713 0.5915 8 6 4.3663 2.9419 -1.4366 9 6 5.1843 4.2364 -1.4326 10 6 6.5457 3.9716 -0.7855 11 7 6.3508 3.4904 0.5882 12 6 7.6362 3.3576 1.2868 13 6 8.1444 4.7440 1.6878 14 6 7.1841 5.5801 2.4940 15 1 7.1475 6.6499 2.3503 16 6 6.3523 4.9792 3.4149 17 7 6.5527 3.7270 3.7635 18 14 4.9409 5.9438 4.1677 19 1 4.2027 5.0777 5.1218 20 1 5.4779 7.1267 4.8872 21 1 4.0203 6.3940 3.0929 22 6 9.6363 4.8880 1.9948 23 6 9.0605 5.4728 0.7027 24 6 5.6085 2.2235 0.6066 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9501 -0.8400 -0.0004 29 1 3.9717 0.3271 0.0005 30 1 3.3797 3.1358 -1.8574 31 1 4.8773 2.1900 -2.0379 32 1 4.6537 5.0003 -0.8645 33 1 5.3289 4.5786 -2.4573 34 1 7.1251 4.8948 -0.7681 35 1 7.0814 3.2176 -1.3619 36 1 8.3613 2.8819 0.6263 37 1 7.5030 2.7472 2.1799 38 1 6.0143 3.3264 4.4638 39 1 9.9233 5.5874 2.7800 40 1 10.2559 3.9952 1.9106 41 1 9.3015 4.9644 -0.2309 42 1 8.9687 6.5570 0.6377 43 1 6.1487 1.4776 0.0236 44 1 5.5073 1.8769 1.6351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308075586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:49 Heat of formation + Delta-G solvation = 3.459969 kcal Electronic energy + Delta-G solvation = -23421.997451 eV Core-core repulsion = 20182.198939 eV Total energy + Delta-G solvation = -3239.798512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98475 -38.36539 -36.35526 -34.49545 -34.05226 -32.06768 -31.73392 -29.32006 -26.31914 -26.06414 -25.09966 -22.39929 -22.28257 -21.04169 -20.63518 -19.53163 -18.84268 -18.28921 -16.54852 -15.86190 -15.35117 -14.92554 -14.60570 -14.48978 -14.26925 -13.97429 -13.64007 -13.52701 -13.33250 -12.86482 -12.55446 -12.53433 -12.31979 -12.02522 -11.40515 -11.09625 -10.87308 -10.78528 -10.49090 -10.45219 -10.38603 -10.34981 -10.15464 -9.97069 -9.86144 -9.25651 -9.17042 -8.94581 -8.66131 -8.54462 -7.89837 -7.17952 -5.85997 -3.84744 2.80624 3.35918 3.43236 3.48436 3.55522 4.29002 4.55122 4.82893 5.06150 5.20319 5.26985 5.35280 5.44816 5.47831 5.66618 5.69219 5.71715 5.78585 6.03855 6.09605 6.16656 6.19372 6.31161 6.39165 6.41259 6.46401 6.50963 6.63525 6.65659 6.72465 6.74930 6.79736 6.89833 7.00778 7.04483 7.23136 7.39860 7.60385 8.07037 8.09585 8.19530 8.24548 8.62393 8.74161 9.07603 9.74737 11.17624 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.005654 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.076056 B = 4951.222090 C = 5811.529184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.756 5.756 3 C 0.702 3.298 4 O -0.587 6.587 5 N -0.738 5.738 6 C 0.165 3.835 7 H 0.097 0.903 8 C -0.125 4.125 9 C -0.113 4.113 10 C 0.056 3.944 11 N -0.494 5.494 12 C 0.105 3.895 13 C 0.072 3.928 14 C -0.471 4.471 15 H 0.053 0.947 16 C 0.092 3.908 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.290 1.290 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.219 4.219 24 C 0.061 3.939 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.395 0.605 29 H 0.391 0.609 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.013 0.987 36 H -0.011 1.011 37 H 0.114 0.886 38 H 0.257 0.743 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.016 0.984 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -10.113 -8.849 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.412 5.412 3 C 0.401 3.599 4 O -0.465 6.465 5 N -0.392 5.392 6 C 0.060 3.940 7 H 0.115 0.885 8 C -0.164 4.164 9 C -0.151 4.151 10 C -0.073 4.073 11 N -0.217 5.217 12 C -0.022 4.022 13 C 0.071 3.929 14 C -0.508 4.508 15 H 0.071 0.929 16 C -0.111 4.111 17 N -0.518 5.518 18 Si 0.715 3.285 19 H -0.216 1.216 20 H -0.209 1.209 21 H -0.200 1.200 22 C -0.246 4.246 23 C -0.256 4.256 24 C -0.069 4.069 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.228 0.772 29 H 0.224 0.776 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.031 0.969 36 H 0.007 0.993 37 H 0.132 0.868 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.034 0.966 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.537 -8.930 -8.505 13.958 hybrid contribution 0.264 -0.951 -0.069 0.989 sum -6.272 -9.882 -8.574 14.509 Atomic orbital electron populations 1.21337 0.78516 1.01551 1.02201 1.44937 1.07588 1.07203 1.81498 1.15978 0.81972 0.84126 0.77783 1.90935 1.67844 1.30223 1.57483 1.45210 1.04402 1.09961 1.79618 1.20902 0.92503 0.84144 0.96426 0.88471 1.21940 1.00138 0.97678 0.96597 1.21536 0.96441 0.97350 0.99794 1.22156 0.95890 1.00119 0.89096 1.61440 1.21218 1.25747 1.13314 1.21729 0.85518 0.97900 0.97070 1.18897 0.87183 0.92668 0.94186 1.20230 1.17994 0.92359 1.20228 0.92882 1.24679 0.96168 0.94423 0.95831 1.69764 1.40068 1.12833 1.29159 0.86774 0.83324 0.79689 0.78747 1.21637 1.20871 1.19958 1.22969 1.02246 1.01273 0.98129 1.22948 1.11188 0.98960 0.92504 1.22149 0.92192 0.91763 1.00760 0.92471 0.92593 0.90986 0.77223 0.77566 0.92037 0.92907 0.90666 0.92233 0.89896 0.96942 0.99326 0.86780 0.93320 0.90507 0.92126 0.91947 0.90897 0.96601 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.01 10.70 59.85 0.64 1.65 16 2 N -0.76 -8.15 5.72 -72.07 -0.41 -8.56 16 3 C 0.70 10.80 8.53 -86.92 -0.74 10.06 16 4 O -0.59 -11.81 16.01 5.29 0.08 -11.72 16 5 N -0.74 -10.35 5.09 -58.60 -0.30 -10.65 16 6 C 0.17 2.82 2.62 -67.85 -0.18 2.65 16 7 H 0.10 2.05 7.58 -51.93 -0.39 1.66 16 8 C -0.12 -1.96 5.58 -26.61 -0.15 -2.11 16 9 C -0.11 -1.86 6.09 -26.64 -0.16 -2.02 16 10 C 0.06 1.02 5.27 -3.83 -0.02 1.00 16 11 N -0.49 -10.25 4.18 -234.67 -0.98 -11.23 16 12 C 0.10 2.36 4.12 -3.82 -0.02 2.35 16 13 C 0.07 1.73 1.68 -155.66 -0.26 1.46 16 14 C -0.47 -12.69 8.72 -34.44 -0.30 -12.99 16 15 H 0.05 1.46 7.84 -52.49 -0.41 1.05 16 16 C 0.09 2.47 5.15 -17.82 -0.09 2.37 16 17 N -0.88 -23.70 10.83 55.43 0.60 -23.10 16 18 Si 0.89 21.82 29.56 -169.99 -5.02 16.80 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.21 -4.69 9.96 -26.69 -0.27 -4.95 16 23 C -0.22 -4.71 8.51 -26.70 -0.23 -4.94 16 24 C 0.06 1.10 4.90 -3.84 -0.02 1.08 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.40 2.90 8.84 -40.82 -0.36 2.54 16 29 H 0.39 4.21 8.62 -40.82 -0.35 3.86 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.62 6.11 -51.93 -0.32 1.30 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 36 H -0.01 -0.24 7.94 -51.93 -0.41 -0.66 16 37 H 0.11 2.83 5.68 -51.93 -0.30 2.54 16 38 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 39 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.24 7.94 -51.93 -0.41 0.82 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 1.65 7.93 -51.93 -0.41 1.24 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -30.85 349.03 -10.14 -40.98 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.58 Total: 6.62 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.79 Total: -4.40 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.09 Total: -53.55 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.85 -10.14 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308075586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.443 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds