Wall clock time and date at job start Tue Mar 31 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34109 * 125.51541 * 2 1 4 4 O 1.21589 * 123.06268 * 0.04798 * 3 2 1 5 5 N 1.34026 * 113.87494 * 180.02562 * 3 2 1 6 6 C 1.47187 * 109.15133 * 0.02562 * 5 3 2 7 7 C 1.46572 * 125.51622 * 180.02562 * 2 1 3 8 8 C 1.52563 * 110.65223 * 61.34756 * 7 2 1 9 9 C 1.53144 * 109.31605 * 293.47262 * 8 7 2 10 10 N 1.46847 * 109.46260 * 301.70955 * 9 8 7 11 11 C 1.46901 * 111.00221 * 186.33567 * 10 9 8 12 12 C 1.52994 * 109.46881 * 170.00192 * 11 10 9 13 13 C 1.53009 * 109.46872 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47013 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00155 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99453 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47079 * 60.00456 * 18 16 14 20 20 H 1.48503 * 109.47043 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47574 * 300.00010 * 18 16 14 22 22 C 1.46852 * 111.30442 * 62.15662 * 10 9 8 23 23 C 1.52568 * 110.64530 * 298.59644 * 7 2 1 24 24 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47203 * 300.02466 * 1 2 3 26 26 H 1.08994 * 109.47395 * 60.02953 * 1 2 3 27 27 H 0.97004 * 125.42489 * 179.97438 * 5 3 2 28 28 H 1.08998 * 110.58439 * 241.45470 * 6 5 3 29 29 H 1.09001 * 110.71736 * 118.60184 * 6 5 3 30 30 H 1.08999 * 109.49553 * 173.52358 * 8 7 2 31 31 H 1.08999 * 109.52644 * 53.44432 * 8 7 2 32 32 H 1.08998 * 109.47429 * 181.71156 * 9 8 7 33 33 H 1.08998 * 109.47292 * 61.70853 * 9 8 7 34 34 H 1.08996 * 109.46609 * 289.99982 * 11 10 9 35 35 H 1.08996 * 109.46758 * 49.99747 * 11 10 9 36 36 H 1.09002 * 109.47505 * 300.00040 * 12 11 10 37 37 H 1.09003 * 109.47525 * 60.00492 * 12 11 10 38 38 H 1.08996 * 109.46718 * 299.99851 * 13 12 11 39 39 H 1.08996 * 109.46638 * 60.00410 * 13 12 11 40 40 H 0.97007 * 119.99877 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.47640 * 57.84152 * 22 10 9 42 42 H 1.09003 * 109.46895 * 177.84864 * 22 10 9 43 43 H 1.09003 * 109.49717 * 186.48443 * 23 7 2 44 44 H 1.09004 * 109.49359 * 306.57148 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2441 1.0916 0.0000 4 8 1.8000 2.2235 0.0009 5 7 3.5568 0.8212 -0.0005 6 6 3.7492 -0.6381 -0.0016 7 6 2.3165 -1.1930 -0.0005 8 6 2.0719 -2.0281 -1.2537 9 6 0.6516 -2.5995 -1.2124 10 7 0.4859 -3.4113 0.0000 11 6 -0.8128 -4.0979 0.0004 12 6 -0.8498 -5.1183 1.1397 13 6 -2.2027 -5.8330 1.1405 14 6 -2.2389 -6.8385 2.2624 15 1 -1.3825 -6.9565 2.9098 16 6 -3.3654 -7.6080 2.4624 17 7 -4.4080 -7.4648 1.6737 18 14 -3.4100 -8.8550 3.8525 19 1 -3.2171 -8.1576 5.1493 20 1 -4.7231 -9.5485 3.8534 21 1 -2.3252 -9.8505 3.6596 22 6 0.6525 -2.5997 1.2124 23 6 2.0728 -2.0284 1.2526 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5142 0.8897 26 1 -0.3634 0.5133 -0.8902 27 1 4.2670 1.4819 -0.0010 28 1 4.2829 -0.9549 0.8944 29 1 4.2832 -0.9559 -0.8971 30 1 2.7919 -2.8455 -1.2923 31 1 2.1861 -1.4007 -2.1376 32 1 0.4845 -3.2214 -2.0918 33 1 -0.0689 -1.7817 -1.2035 34 1 -1.6097 -3.3676 0.1406 35 1 -0.9530 -4.6104 -0.9513 36 1 -0.0528 -5.8485 0.9995 37 1 -0.7096 -4.6056 2.0914 38 1 -2.9993 -5.1024 1.2810 39 1 -2.3433 -6.3456 0.1890 40 1 -5.2007 -8.0059 1.8146 41 1 -0.0680 -1.7818 1.2042 42 1 0.4861 -3.2219 2.0918 43 1 2.7928 -2.8459 1.2907 44 1 2.1875 -1.4006 2.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332012329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:28 Heat of formation + Delta-G solvation = 0.649071 kcal Electronic energy + Delta-G solvation = -23023.120514 eV Core-core repulsion = 19783.200112 eV Total energy + Delta-G solvation = -3239.920402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86994 -38.83746 -36.54203 -34.63580 -33.66893 -32.48396 -31.22244 -30.78052 -27.97645 -26.93357 -25.59467 -23.58433 -22.91762 -21.72846 -20.96715 -20.21602 -19.88218 -17.29814 -16.43900 -16.40721 -16.07542 -15.58129 -15.30282 -14.78635 -14.54733 -14.39224 -14.16844 -13.92607 -13.81412 -13.59203 -12.94686 -12.81606 -12.70108 -12.38641 -12.21435 -11.86899 -11.49260 -11.37943 -11.08056 -11.00685 -10.74932 -10.72456 -10.51657 -10.44072 -10.22015 -9.60989 -9.48820 -9.34443 -9.07897 -8.72848 -8.34760 -8.03885 -6.00266 -4.02475 2.41956 2.98886 3.33070 3.37530 3.39879 3.63037 3.93643 4.06714 4.37831 4.46244 4.48917 4.74653 5.00062 5.05720 5.08028 5.18331 5.21222 5.32230 5.35601 5.37787 5.49243 5.58259 5.59566 5.69893 5.76627 5.82227 5.86362 5.95357 6.02875 6.08848 6.27230 6.54019 6.67006 6.73291 6.87531 7.08678 7.29266 7.31560 7.33480 7.67133 7.81980 7.99904 8.43008 8.43611 9.04564 9.61600 11.11127 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.003164 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.477057 B = 8847.093701 C = 8919.256406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.620 5.620 3 C 0.698 3.302 4 O -0.592 6.592 5 N -0.744 5.744 6 C 0.101 3.899 7 C 0.148 3.852 8 C -0.114 4.114 9 C 0.038 3.962 10 N -0.537 5.537 11 C 0.056 3.944 12 C -0.104 4.104 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.036 3.964 23 C -0.114 4.114 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.427 0.573 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.261 0.739 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.460 12.982 -5.475 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.358 5.358 3 C 0.399 3.601 4 O -0.470 6.470 5 N -0.406 5.406 6 C -0.024 4.024 7 C 0.062 3.938 8 C -0.152 4.152 9 C -0.090 4.090 10 N -0.262 5.262 11 C -0.070 4.070 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.091 4.091 23 C -0.153 4.153 24 H 0.121 0.879 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.268 0.732 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.213 13.118 -5.512 21.571 hybrid contribution -0.418 0.034 0.733 0.845 sum 15.795 13.153 -4.779 21.103 Atomic orbital electron populations 1.22065 0.76252 1.03787 1.02049 1.47037 1.05955 1.05242 1.77539 1.15969 0.81911 0.84572 0.77669 1.90949 1.76328 1.21063 1.58677 1.45151 1.06650 1.08040 1.80743 1.22445 0.96133 0.80502 1.03310 1.21013 0.88576 0.86742 0.97466 1.21865 0.98547 0.98997 0.95833 1.22374 0.95889 0.96500 0.94190 1.61992 1.33977 1.29256 1.00972 1.22292 0.87036 0.96408 1.01309 1.21658 1.00985 0.96430 0.95157 1.19066 0.90565 0.94825 0.97102 1.21210 1.00038 1.20147 1.14392 0.92749 1.25025 0.95733 0.97338 0.96383 1.69956 1.04587 1.40756 1.38297 0.86663 0.77132 0.81559 0.82674 1.20268 1.21327 1.20225 1.22434 0.95551 0.96443 0.94683 1.21885 0.98732 0.98972 0.95738 0.87947 0.92084 0.92210 0.73196 0.89743 0.89785 0.89408 0.91163 0.90378 0.93705 0.95385 0.91072 0.92548 0.93474 0.96861 0.96641 0.92972 0.93685 0.89335 0.89383 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 8.34 59.85 0.50 1.60 16 2 N -0.62 -6.95 2.81 -172.81 -0.49 -7.44 16 3 C 0.70 9.05 8.61 -88.18 -0.76 8.30 16 4 O -0.59 -10.18 17.70 5.29 0.09 -10.09 16 5 N -0.74 -6.64 6.38 -64.79 -0.41 -7.05 16 6 C 0.10 0.69 7.34 -3.33 -0.02 0.66 16 7 C 0.15 1.32 0.87 -131.89 -0.12 1.20 16 8 C -0.11 -0.98 4.90 -26.88 -0.13 -1.11 16 9 C 0.04 0.41 5.15 -3.78 -0.02 0.39 16 10 N -0.54 -6.91 4.64 -234.54 -1.09 -8.00 16 11 C 0.06 0.90 4.96 -3.83 -0.02 0.88 16 12 C -0.10 -2.05 5.08 -26.73 -0.14 -2.18 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.04 0.43 4.98 -3.78 -0.02 0.41 16 23 C -0.11 -1.08 4.90 -26.88 -0.13 -1.21 16 24 H 0.10 1.10 2.69 -51.93 -0.14 0.96 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.43 2.97 8.96 -40.82 -0.37 2.60 16 28 H 0.08 0.45 7.71 -51.93 -0.40 0.05 16 29 H 0.08 0.43 7.71 -51.93 -0.40 0.03 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 33 H 0.05 0.49 4.54 -51.93 -0.24 0.25 16 34 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.91 6.42 -51.93 -0.33 0.58 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.05 0.54 4.54 -51.93 -0.24 0.31 16 42 H 0.09 1.18 6.19 -51.93 -0.32 0.86 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -33.28 332.55 -9.60 -42.88 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.03 Total: -1.73 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.41 Total: -4.01 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -1.25 Total: -48.55 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.28 -9.60 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332012329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.529 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds