Wall clock time and date at job start Tue Mar 31 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34109 * 125.51541 * 2 1 4 4 O 1.21589 * 123.06268 * 0.04798 * 3 2 1 5 5 N 1.34026 * 113.87494 * 180.02562 * 3 2 1 6 6 C 1.47187 * 109.15133 * 0.02562 * 5 3 2 7 7 C 1.46572 * 125.51622 * 180.02562 * 2 1 3 8 8 C 1.52563 * 110.65223 * 61.34756 * 7 2 1 9 9 C 1.53144 * 109.31605 * 293.47262 * 8 7 2 10 10 N 1.46847 * 109.46260 * 301.70955 * 9 8 7 11 11 C 1.46901 * 111.00221 * 186.33567 * 10 9 8 12 12 C 1.52994 * 109.46881 * 170.00192 * 11 10 9 13 13 C 1.53009 * 109.46872 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47013 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00155 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99453 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47079 * 60.00456 * 18 16 14 20 20 H 1.48503 * 109.47043 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47574 * 300.00010 * 18 16 14 22 22 C 1.46852 * 111.30442 * 62.15662 * 10 9 8 23 23 C 1.52568 * 110.64530 * 298.59644 * 7 2 1 24 24 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47203 * 300.02466 * 1 2 3 26 26 H 1.08994 * 109.47395 * 60.02953 * 1 2 3 27 27 H 0.97004 * 125.42489 * 179.97438 * 5 3 2 28 28 H 1.08998 * 110.58439 * 241.45470 * 6 5 3 29 29 H 1.09001 * 110.71736 * 118.60184 * 6 5 3 30 30 H 1.08999 * 109.49553 * 173.52358 * 8 7 2 31 31 H 1.08999 * 109.52644 * 53.44432 * 8 7 2 32 32 H 1.08998 * 109.47429 * 181.71156 * 9 8 7 33 33 H 1.08998 * 109.47292 * 61.70853 * 9 8 7 34 34 H 1.08996 * 109.46609 * 289.99982 * 11 10 9 35 35 H 1.08996 * 109.46758 * 49.99747 * 11 10 9 36 36 H 1.09002 * 109.47505 * 300.00040 * 12 11 10 37 37 H 1.09003 * 109.47525 * 60.00492 * 12 11 10 38 38 H 1.08996 * 109.46718 * 299.99851 * 13 12 11 39 39 H 1.08996 * 109.46638 * 60.00410 * 13 12 11 40 40 H 0.97007 * 119.99877 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.47640 * 57.84152 * 22 10 9 42 42 H 1.09003 * 109.46895 * 177.84864 * 22 10 9 43 43 H 1.09003 * 109.49717 * 186.48443 * 23 7 2 44 44 H 1.09004 * 109.49359 * 306.57148 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2441 1.0916 0.0000 4 8 1.8000 2.2235 0.0009 5 7 3.5568 0.8212 -0.0005 6 6 3.7492 -0.6381 -0.0016 7 6 2.3165 -1.1930 -0.0005 8 6 2.0719 -2.0281 -1.2537 9 6 0.6516 -2.5995 -1.2124 10 7 0.4859 -3.4113 0.0000 11 6 -0.8128 -4.0979 0.0004 12 6 -0.8498 -5.1183 1.1397 13 6 -2.2027 -5.8330 1.1405 14 6 -2.2389 -6.8385 2.2624 15 1 -1.3825 -6.9565 2.9098 16 6 -3.3654 -7.6080 2.4624 17 7 -4.4080 -7.4648 1.6737 18 14 -3.4100 -8.8550 3.8525 19 1 -3.2171 -8.1576 5.1493 20 1 -4.7231 -9.5485 3.8534 21 1 -2.3252 -9.8505 3.6596 22 6 0.6525 -2.5997 1.2124 23 6 2.0728 -2.0284 1.2526 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5142 0.8897 26 1 -0.3634 0.5133 -0.8902 27 1 4.2670 1.4819 -0.0010 28 1 4.2829 -0.9549 0.8944 29 1 4.2832 -0.9559 -0.8971 30 1 2.7919 -2.8455 -1.2923 31 1 2.1861 -1.4007 -2.1376 32 1 0.4845 -3.2214 -2.0918 33 1 -0.0689 -1.7817 -1.2035 34 1 -1.6097 -3.3676 0.1406 35 1 -0.9530 -4.6104 -0.9513 36 1 -0.0528 -5.8485 0.9995 37 1 -0.7096 -4.6056 2.0914 38 1 -2.9993 -5.1024 1.2810 39 1 -2.3433 -6.3456 0.1890 40 1 -5.2007 -8.0059 1.8146 41 1 -0.0680 -1.7818 1.2042 42 1 0.4861 -3.2219 2.0918 43 1 2.7928 -2.8459 1.2907 44 1 2.1875 -1.4006 2.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332012329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:28 Heat of formation + Delta-G solvation = -23.587025 kcal Electronic energy + Delta-G solvation = -23024.171470 eV Core-core repulsion = 19783.200112 eV Total energy + Delta-G solvation = -3240.971358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.69353 -39.83695 -37.62013 -35.98356 -35.00481 -33.88582 -32.38940 -31.89034 -29.20079 -27.96490 -26.93340 -24.53745 -24.34554 -22.76204 -21.97726 -21.41775 -21.02416 -18.48209 -18.14328 -17.23642 -17.05089 -16.70991 -16.36778 -16.34531 -15.66994 -15.61991 -15.11816 -14.93989 -14.74629 -14.47956 -14.32513 -13.93748 -13.61594 -13.54110 -13.49143 -13.30215 -12.90786 -12.72100 -12.46552 -12.33708 -12.19483 -12.03467 -11.74412 -11.60725 -11.37969 -11.28671 -11.16038 -10.96730 -10.52206 -10.34209 -9.52137 -9.09672 -8.18341 -6.29045 1.41403 1.44226 1.52060 1.61928 2.04192 2.42335 2.89671 3.00733 3.15027 3.33603 3.67026 3.72007 3.90733 4.12339 4.20063 4.26918 4.38222 4.46834 4.49710 4.52558 4.59453 4.63016 4.71457 4.73977 4.77649 4.90189 4.95584 5.04052 5.06501 5.08837 5.15401 5.18218 5.28364 5.32496 5.55000 5.67837 5.78711 5.89203 6.11815 6.19494 6.24457 6.30538 6.49865 6.88387 7.40231 7.54087 8.93305 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.003164 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.477057 B = 8847.093701 C = 8919.256406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.621 5.621 3 C 0.688 3.312 4 O -0.644 6.644 5 N -0.731 5.731 6 C 0.104 3.896 7 C 0.144 3.856 8 C -0.106 4.106 9 C 0.035 3.965 10 N -0.534 5.534 11 C 0.068 3.932 12 C -0.088 4.088 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.033 3.967 23 C -0.106 4.106 24 H 0.105 0.895 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.436 0.564 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.049 0.951 38 H -0.012 1.012 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.963 12.426 -5.153 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.358 5.358 3 C 0.388 3.612 4 O -0.527 6.527 5 N -0.393 5.393 6 C -0.020 4.020 7 C 0.059 3.941 8 C -0.144 4.144 9 C -0.093 4.093 10 N -0.259 5.259 11 C -0.060 4.060 12 C -0.126 4.126 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.094 4.094 23 C -0.145 4.145 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.279 0.721 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.006 0.994 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.775 12.540 -5.193 23.167 hybrid contribution -1.214 0.202 0.611 1.374 sum 17.560 12.742 -4.581 22.174 Atomic orbital electron populations 1.22013 0.76730 1.03689 1.01581 1.47113 1.05957 1.05785 1.76915 1.16272 0.83177 0.84080 0.77656 1.90905 1.77502 1.23141 1.61103 1.45118 1.05344 1.09506 1.79302 1.22669 0.94776 0.78631 1.05893 1.21206 0.89620 0.85971 0.97308 1.21840 0.97190 0.99416 0.95961 1.22471 0.97574 0.96182 0.93035 1.61944 1.31507 1.30116 1.02302 1.21997 0.88807 0.95710 0.99498 1.21382 0.97383 0.96835 0.96963 1.18974 0.92961 0.94109 0.95199 1.21685 1.00362 1.20801 1.15144 0.92193 1.25977 0.95294 0.99516 0.99099 1.70092 1.05274 1.41930 1.40193 0.85526 0.77407 0.78911 0.79376 1.19201 1.20990 1.19069 1.22469 0.97486 0.95904 0.93574 1.21841 0.97073 0.99400 0.96190 0.87707 0.92934 0.92433 0.72075 0.87416 0.86994 0.87666 0.90274 0.90137 0.93986 0.95986 0.91231 0.92724 0.93206 0.99363 0.99031 0.92835 0.94111 0.90973 0.87795 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.22 8.34 127.77 1.07 3.29 16 2 N -0.62 -13.08 2.81 -819.30 -2.30 -15.38 16 3 C 0.69 17.05 8.61 179.50 1.55 18.59 16 4 O -0.64 -22.29 17.70 -4.00 -0.07 -22.37 16 5 N -0.73 -11.16 6.38 -477.58 -3.05 -14.21 16 6 C 0.10 0.99 7.34 86.46 0.63 1.62 16 7 C 0.14 2.15 0.87 3.52 0.00 2.15 16 8 C -0.11 -1.48 4.90 30.50 0.15 -1.33 16 9 C 0.03 0.68 5.15 86.36 0.44 1.12 16 10 N -0.53 -13.02 4.64 -895.95 -4.16 -17.18 16 11 C 0.07 2.14 4.96 86.30 0.43 2.57 16 12 C -0.09 -3.47 5.08 30.60 0.16 -3.31 16 13 C 0.03 1.31 4.97 29.85 0.15 1.46 16 14 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 17 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 18 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 C 0.03 0.75 4.98 86.36 0.43 1.18 16 23 C -0.11 -1.72 4.90 30.50 0.15 -1.57 16 24 H 0.11 2.23 2.69 -2.39 -0.01 2.23 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.44 5.00 8.96 -92.71 -0.83 4.17 16 28 H 0.11 0.62 7.71 -2.39 -0.02 0.60 16 29 H 0.11 0.54 7.71 -2.39 -0.02 0.53 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.56 8.01 -2.39 -0.02 1.54 16 33 H 0.04 0.86 4.54 -2.39 -0.01 0.85 16 34 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 35 H 0.07 2.22 7.98 -2.39 -0.02 2.20 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 1.93 6.42 -2.39 -0.02 1.91 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 41 H 0.04 0.97 4.54 -2.39 -0.01 0.96 16 42 H 0.07 1.87 6.19 -2.39 -0.01 1.86 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.46 332.55 -1.25 -74.70 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.17 Total: 9.27 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.85 Total: -4.28 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -9.22 Total: -103.35 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.07 Total: -22.37 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.46 -1.25 -74.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332012329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds