Wall clock time and date at job start Tue Mar 31 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 C 1.52998 * 109.46873 * 65.00139 * 3 2 1 5 5 C 1.52995 * 109.47395 * 54.22473 * 4 3 2 6 6 C 1.53001 * 109.47277 * 185.00189 * 3 2 1 7 7 N 1.46899 * 109.46744 * 173.67054 * 6 3 2 8 8 C 1.46903 * 110.99937 * 169.99623 * 7 6 3 9 9 C 1.50690 * 109.47441 * 191.62831 * 8 7 6 10 10 H 1.07997 * 120.00190 * 4.02559 * 9 8 7 11 11 C 1.37878 * 119.99866 * 184.02244 * 9 8 7 12 12 N 1.31513 * 120.00483 * 5.38017 * 11 9 8 13 13 Si 1.86808 * 119.99874 * 185.38145 * 11 9 8 14 14 H 1.48502 * 109.47075 * 64.99810 * 13 11 9 15 15 H 1.48500 * 109.47190 * 184.99770 * 13 11 9 16 16 H 1.48497 * 109.46868 * 304.99886 * 13 11 9 17 17 C 1.38376 * 111.00697 * 293.95517 * 7 6 3 18 18 N 1.31473 * 126.43735 * 293.68260 * 17 7 6 19 19 N 1.28417 * 110.51067 * 179.97438 * 18 17 7 20 20 N 1.28916 * 110.31506 * 0.02562 * 19 18 17 21 21 N 1.35306 * 126.44323 * 113.36293 * 17 7 6 22 22 C 1.46505 * 127.37746 * 0.02562 * 21 17 7 23 23 C 1.53005 * 109.47275 * 96.38053 * 22 21 17 24 24 H 1.09004 * 109.46593 * 300.00012 * 1 2 3 25 25 H 1.08999 * 109.47132 * 59.99997 * 1 2 3 26 26 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47036 * 240.00272 * 2 1 3 28 28 H 1.08997 * 109.47467 * 120.00425 * 2 1 3 29 29 H 1.09007 * 109.46606 * 305.00237 * 3 2 1 30 30 H 1.09003 * 109.46823 * 174.22812 * 4 3 2 31 31 H 1.09010 * 109.46951 * 294.22371 * 4 3 2 32 32 H 1.08997 * 109.47348 * 185.49823 * 5 4 3 33 33 H 1.08999 * 109.47245 * 305.50586 * 5 4 3 34 34 H 1.09002 * 109.46633 * 65.50282 * 5 4 3 35 35 H 1.08998 * 109.46647 * 293.67368 * 6 3 2 36 36 H 1.09002 * 109.46845 * 53.67266 * 6 3 2 37 37 H 1.08998 * 109.47287 * 311.63341 * 8 7 6 38 38 H 1.09003 * 109.46735 * 71.62662 * 8 7 6 39 39 H 0.96997 * 120.00227 * 179.97438 * 12 11 9 40 40 H 1.08996 * 109.46716 * 216.38099 * 22 21 17 41 41 H 1.08995 * 109.47044 * 336.38088 * 22 21 17 42 42 H 1.08999 * 109.46826 * 300.02138 * 23 22 21 43 43 H 1.09003 * 109.46809 * 60.01622 * 23 22 21 44 44 H 1.09001 * 109.47225 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.1234 1.2909 2.4925 6 6 3.5650 1.4442 -0.1258 7 7 4.0420 2.8252 -0.2781 8 6 5.5051 2.8924 -0.1643 9 6 5.9337 4.3315 -0.0387 10 1 5.1907 5.1129 0.0225 11 6 7.2745 4.6508 -0.0018 12 7 8.1790 3.7133 -0.1822 13 14 7.8065 6.4151 0.3045 14 1 7.3988 6.8246 1.6725 15 1 9.2825 6.5165 0.1766 16 1 7.1609 7.3068 -0.6921 17 6 3.6123 3.3692 -1.4757 18 7 3.9732 2.9875 -2.6809 19 7 3.3883 3.7021 -3.5733 20 7 2.6245 4.5779 -3.0153 21 7 2.7371 4.3900 -1.6267 22 6 2.0556 5.1410 -0.5693 23 6 2.8303 6.4277 -0.2771 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6054 1.9815 -0.8419 30 1 2.0848 3.1185 1.3526 31 1 0.5499 2.2171 1.3491 32 1 1.7520 1.7252 3.4207 33 1 1.7527 0.2706 2.3948 34 1 3.2133 1.2818 2.5062 35 1 4.0038 1.0048 0.7700 36 1 3.8582 0.8602 -0.9981 37 1 5.8267 2.3391 0.7181 38 1 5.9591 2.4542 -1.0532 39 1 9.1222 3.9380 -0.1567 40 1 1.0457 5.3908 -0.8944 41 1 2.0066 4.5332 0.3341 42 1 3.8403 6.1778 0.0475 43 1 2.8790 7.0355 -1.1806 44 1 2.3235 6.9861 0.5099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332938638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:04 Heat of formation + Delta-G solvation = 107.450979 kcal Electronic energy + Delta-G solvation = -24006.781213 eV Core-core repulsion = 20803.784841 eV Total energy + Delta-G solvation = -3202.996372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28691 -38.46509 -35.88547 -35.15128 -32.74604 -31.11466 -30.69503 -30.23192 -28.70942 -26.36630 -24.52725 -24.20403 -23.02388 -22.90395 -21.72415 -20.24455 -18.94204 -16.92585 -16.55155 -16.18512 -15.57767 -15.39829 -15.12178 -14.64311 -14.32407 -13.99939 -13.27628 -13.10544 -13.09430 -12.80289 -12.67484 -12.39554 -12.19531 -11.96702 -11.78939 -11.67320 -11.62188 -11.46638 -11.19048 -10.96028 -10.85079 -10.81560 -10.41145 -10.34949 -10.27723 -10.21753 -10.00848 -9.84757 -9.44520 -9.26413 -8.64162 -8.03448 -6.18068 -4.21533 1.67763 2.37757 3.01768 3.23368 3.28906 3.29587 4.15162 4.38227 4.73229 4.80106 4.91150 5.00634 5.17230 5.18904 5.24232 5.33932 5.35673 5.38862 5.48459 5.67495 5.70864 5.72843 5.74400 5.82986 5.86897 5.92898 5.97907 6.08191 6.13999 6.15892 6.20272 6.27914 6.34296 6.37493 6.48859 6.56295 6.64506 6.90417 7.18061 7.48406 7.77077 7.85970 8.16376 8.81899 9.19663 9.42851 10.92144 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.006606 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.956419 B = 4237.505332 C = 4759.931601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.154 4.154 6 C 0.063 3.937 7 N -0.471 5.471 8 C 0.200 3.800 9 C -0.525 4.525 10 H 0.063 0.937 11 C 0.066 3.934 12 N -0.887 5.887 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.277 1.277 17 C 0.466 3.534 18 N -0.357 5.357 19 N -0.047 5.047 20 N -0.110 5.110 21 N -0.370 5.370 22 C 0.127 3.873 23 C -0.177 4.177 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 -3.193 5.257 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.107 4.107 4 C -0.153 4.153 5 C -0.211 4.211 6 C -0.065 4.065 7 N -0.199 5.199 8 C 0.077 3.923 9 C -0.564 4.564 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.721 3.279 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.202 1.202 17 C 0.100 3.900 18 N -0.214 5.214 19 N -0.043 5.043 20 N -0.096 5.096 21 N -0.168 5.168 22 C 0.005 3.995 23 C -0.235 4.235 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.344 -2.865 4.250 15.232 hybrid contribution 0.703 0.820 0.543 1.209 sum -13.641 -2.045 4.793 14.602 Atomic orbital electron populations 1.21775 0.96001 1.01210 1.01725 1.21609 0.95780 0.96272 1.02315 1.21254 0.95104 0.96190 0.98166 1.21551 0.99700 1.00139 0.93880 1.21878 1.02076 0.99749 0.97436 1.22324 0.94461 0.87367 1.02311 1.59439 1.18624 1.19008 1.22829 1.20000 0.75363 0.98816 0.98164 1.21047 0.91787 0.91751 1.51768 0.91868 1.24895 0.96460 0.97524 0.94862 1.69927 1.01240 1.32937 1.48371 0.86617 0.77750 0.84634 0.78874 1.19966 1.21020 1.20225 1.22993 0.87580 0.87550 0.91874 1.74865 1.23924 1.25512 0.97101 1.77808 1.02984 1.00256 1.23276 1.82366 1.22049 1.20587 0.84646 1.51533 1.32800 1.25456 1.07045 1.21922 0.95576 0.93868 0.88139 1.22297 1.02923 0.95875 1.02422 0.92473 0.93156 0.93030 0.92145 0.91031 0.92412 0.90689 0.92739 0.93261 0.92674 0.91958 0.88959 0.93404 0.93729 0.95848 0.92507 0.89185 0.87251 0.89687 0.92022 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.16 0.36 -1.10 16 2 C -0.12 -1.36 5.06 -26.73 -0.14 -1.49 16 3 C -0.09 -1.16 2.11 -90.62 -0.19 -1.35 16 4 C -0.12 -1.35 5.18 -26.73 -0.14 -1.49 16 5 C -0.15 -1.67 9.23 37.16 0.34 -1.32 16 6 C 0.06 1.02 4.20 -3.82 -0.02 1.00 16 7 N -0.47 -9.20 3.89 -176.23 -0.69 -9.89 16 8 C 0.20 4.82 4.70 -4.98 -0.02 4.80 16 9 C -0.53 -13.83 8.71 -34.44 -0.30 -14.13 16 10 H 0.06 1.62 5.19 -52.49 -0.27 1.35 16 11 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 12 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 13 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.47 9.63 4.61 -320.43 -1.48 8.15 16 18 N -0.36 -8.24 11.87 30.09 0.36 -7.88 16 19 N -0.05 -1.05 13.38 60.35 0.81 -0.25 16 20 N -0.11 -2.24 13.93 60.35 0.84 -1.40 16 21 N -0.37 -6.89 3.69 -61.86 -0.23 -7.12 16 22 C 0.13 1.80 7.24 -4.04 -0.03 1.77 16 23 C -0.18 -2.54 10.24 37.16 0.38 -2.16 16 24 H 0.06 0.52 6.70 -51.93 -0.35 0.17 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 29 H 0.06 0.87 7.21 -51.93 -0.37 0.50 16 30 H 0.07 0.97 5.25 -51.93 -0.27 0.70 16 31 H 0.05 0.56 6.85 -51.92 -0.36 0.21 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.53 5.91 -51.93 -0.31 0.23 16 34 H 0.06 0.75 6.72 -51.93 -0.35 0.40 16 35 H 0.09 1.40 6.21 -51.93 -0.32 1.07 16 36 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.04 1.09 7.90 -51.93 -0.41 0.68 16 38 H 0.02 0.65 7.86 -51.93 -0.41 0.24 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.11 1.43 5.54 -51.93 -0.29 1.14 16 42 H 0.08 1.51 5.58 -51.93 -0.29 1.22 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -30.12 343.55 -6.16 -36.28 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.82 Total: -0.64 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.33 Total: -5.62 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 1.83 Total: -51.22 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.12 -6.16 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332938638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.735 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds