Wall clock time and date at job start Tue Mar 31 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 N 1.46499 * 109.47721 * 179.97438 * 3 2 1 5 5 N 1.40588 * 127.37889 * 276.03899 * 4 3 2 6 6 N 1.28911 * 106.81541 * 179.97438 * 5 4 3 7 7 N 1.28426 * 110.31392 * 359.72729 * 6 5 4 8 8 C 1.31473 * 110.51193 * 0.45664 * 7 6 5 9 9 N 1.38377 * 126.44423 * 179.81779 * 8 7 6 10 10 C 1.46893 * 110.99907 * 274.28515 * 9 8 7 11 11 C 1.50707 * 109.47038 * 190.36750 * 10 9 8 12 12 H 1.07989 * 119.99904 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99659 * 179.72931 * 11 10 9 14 14 N 1.31516 * 120.00215 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99550 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47295 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46623 * 119.99685 * 15 13 11 18 18 H 1.48496 * 109.47100 * 239.99503 * 15 13 11 19 19 C 1.46903 * 110.99772 * 38.23764 * 9 8 7 20 20 C 1.53007 * 109.46805 * 74.01723 * 19 9 8 21 21 C 1.52994 * 109.47208 * 54.38368 * 20 19 9 22 22 C 1.53002 * 109.46986 * 174.38670 * 20 19 9 23 23 C 1.53001 * 109.47023 * 294.38068 * 20 19 9 24 24 H 1.09009 * 109.46961 * 60.00353 * 1 2 3 25 25 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47556 * 300.00080 * 1 2 3 27 27 H 1.08998 * 109.47948 * 239.99980 * 2 1 3 28 28 H 1.08999 * 109.46932 * 119.99842 * 2 1 3 29 29 H 1.09008 * 109.47004 * 59.99559 * 3 2 1 30 30 H 1.08999 * 109.47020 * 299.99788 * 3 2 1 31 31 H 1.09005 * 109.47305 * 70.36992 * 10 9 8 32 32 H 1.08996 * 109.47553 * 310.37058 * 10 9 8 33 33 H 0.97000 * 120.00001 * 180.02562 * 14 13 11 34 34 H 1.08996 * 109.46975 * 194.01083 * 19 9 8 35 35 H 1.08996 * 109.47297 * 314.01590 * 19 9 8 36 36 H 1.08999 * 109.47259 * 60.00170 * 21 20 19 37 37 H 1.09000 * 109.47122 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47322 * 299.99943 * 21 20 19 39 39 H 1.09001 * 109.47329 * 59.99372 * 22 20 19 40 40 H 1.09000 * 109.47299 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.46703 * 299.99979 * 22 20 19 42 42 H 1.09007 * 109.46935 * 68.07182 * 23 20 19 43 43 H 1.08999 * 109.46837 * 188.06801 * 23 20 19 44 44 H 1.08995 * 109.47625 * 308.07497 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 7 4.3580 1.3253 1.1120 6 7 5.5651 1.3724 0.6621 7 7 5.5601 1.5013 -0.6156 8 6 4.3269 1.5550 -1.0684 9 7 3.9419 1.6944 -2.3901 10 6 3.9012 3.1100 -2.7801 11 6 3.2407 3.2409 -4.1284 12 1 2.8870 2.3605 -4.6441 13 6 3.0836 4.4852 -4.7012 14 7 3.5096 5.5579 -4.0707 15 14 2.2656 4.6473 -6.3728 16 1 1.8797 3.3015 -6.8676 17 1 1.0535 5.4965 -6.2503 18 1 3.2137 5.2728 -7.3292 19 6 4.8254 0.9285 -3.2794 20 6 4.5119 -0.5634 -3.1484 21 6 3.0211 -0.7954 -3.4023 22 6 5.3322 -1.3488 -4.1737 23 6 4.8691 -1.0377 -1.7383 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.9171 3.5015 -2.8337 32 1 3.3329 3.6745 -2.0409 33 1 3.3987 6.4333 -4.4735 34 1 4.6655 1.2442 -4.3103 35 1 5.8641 1.1073 -3.0015 36 1 2.7667 -0.4575 -4.4069 37 1 2.7979 -1.8582 -3.3094 38 1 2.4367 -0.2359 -2.6719 39 1 6.3943 -1.1834 -3.9928 40 1 5.1086 -2.4115 -4.0807 41 1 5.0778 -1.0108 -5.1782 42 1 4.1871 -0.5843 -1.0188 43 1 4.7822 -2.1230 -1.6872 44 1 5.8922 -0.7436 -1.5042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332952837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:07 Heat of formation + Delta-G solvation = 94.609215 kcal Electronic energy + Delta-G solvation = -24172.368321 eV Core-core repulsion = 20968.815088 eV Total energy + Delta-G solvation = -3203.553233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.09557 -39.86841 -37.22119 -36.59329 -34.73262 -33.61329 -32.33901 -29.29643 -28.28626 -28.05780 -27.99875 -26.91200 -24.54518 -24.26256 -22.62799 -22.10560 -19.93398 -18.68308 -18.29974 -17.65299 -17.13881 -16.63766 -16.33852 -15.83377 -15.67100 -15.10628 -14.68788 -14.57860 -14.43178 -14.21505 -13.94003 -13.75717 -13.46442 -13.14753 -12.97261 -12.92277 -12.81434 -12.74386 -12.58856 -12.52220 -12.45141 -12.16277 -12.06418 -11.96556 -11.62245 -11.56753 -11.51044 -11.39710 -11.21034 -10.92594 -10.65726 -9.69842 -8.25140 -6.36532 -0.01109 0.80153 1.22692 1.45195 1.47432 1.59691 2.37715 2.69525 3.10781 3.31724 3.62755 3.78748 3.81486 3.95076 4.04131 4.14215 4.20690 4.33428 4.46538 4.53198 4.63452 4.67922 4.70019 4.75360 4.78522 4.81974 4.91766 4.94904 5.00775 5.04695 5.06078 5.12974 5.15790 5.16658 5.29169 5.32220 5.39646 5.46563 5.59422 5.65576 5.78943 5.87847 6.27684 6.76935 7.33786 7.46619 8.86859 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.006710 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.525419 B = 4171.990502 C = 4490.028273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.117 3.883 4 N -0.366 5.366 5 N -0.102 5.102 6 N -0.060 5.060 7 N -0.385 5.385 8 C 0.442 3.558 9 N -0.448 5.448 10 C 0.223 3.777 11 C -0.516 4.516 12 H 0.082 0.918 13 C 0.009 3.991 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.254 1.254 17 H -0.281 1.281 18 H -0.284 1.284 19 C 0.076 3.924 20 C -0.062 4.062 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.137 4.137 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.105 0.895 31 H -0.026 1.026 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -13.618 2.486 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.003 4.003 4 N -0.164 5.164 5 N -0.089 5.089 6 N -0.056 5.056 7 N -0.243 5.243 8 C 0.076 3.924 9 N -0.174 5.174 10 C 0.098 3.902 11 C -0.554 4.554 12 H 0.100 0.900 13 C -0.190 4.190 14 N -0.573 5.573 15 Si 0.796 3.204 16 H -0.177 1.177 17 H -0.207 1.207 18 H -0.210 1.210 19 C -0.051 4.051 20 C -0.062 4.062 21 C -0.183 4.183 22 C -0.191 4.191 23 C -0.194 4.194 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.124 0.876 31 H -0.008 1.008 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.087 0.913 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.529 -13.712 3.446 15.181 hybrid contribution -0.056 1.299 -0.902 1.582 sum -5.585 -12.413 2.544 13.847 Atomic orbital electron populations 1.21650 0.91858 1.03412 1.02981 1.21886 0.98599 0.93193 1.03081 1.22447 0.70400 1.01308 1.06176 1.51740 1.10250 1.50255 1.04176 1.82318 0.95210 1.23655 1.07703 1.77778 1.13626 1.10772 1.03458 1.74838 1.19556 1.26270 1.03657 1.23324 0.85120 0.92877 0.91058 1.59351 1.49781 1.14282 0.93992 1.19507 0.94720 0.79175 0.96792 1.21281 1.38451 0.93642 1.02034 0.89966 1.25881 0.96055 0.95192 1.01917 1.70106 1.47672 0.99059 1.40431 0.85295 0.77754 0.78915 0.78473 1.17694 1.20732 1.21022 1.22351 0.93086 0.92954 0.96742 1.20588 0.97614 0.92501 0.95538 1.21733 0.93678 1.00961 1.01971 1.21776 0.99118 1.00056 0.98115 1.22037 1.00032 1.01147 0.96223 0.91982 0.90648 0.91262 0.91292 0.91292 0.86689 0.87637 1.00773 0.97602 0.92558 0.88812 0.94426 0.92712 0.91802 0.92688 0.93011 0.90803 0.91826 0.94870 0.91289 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.73 6.26 30.59 0.19 -2.54 16 3 C 0.12 3.13 6.52 86.38 0.56 3.69 16 4 N -0.37 -12.77 3.16 -349.62 -1.10 -13.88 16 5 N -0.10 -3.81 13.93 37.02 0.52 -3.29 16 6 N -0.06 -2.48 13.38 37.02 0.50 -1.99 16 7 N -0.38 -16.34 9.82 -58.70 -0.58 -16.91 16 8 C 0.44 17.44 3.86 260.65 1.01 18.45 16 9 N -0.45 -17.88 3.40 -711.45 -2.42 -20.30 16 10 C 0.22 11.03 4.66 85.56 0.40 11.42 16 11 C -0.52 -25.89 8.26 25.60 0.21 -25.68 16 12 H 0.08 3.89 7.31 -2.92 -0.02 3.87 16 13 C 0.01 0.45 5.46 84.65 0.46 0.91 16 14 N -0.93 -53.02 13.29 21.45 0.28 -52.74 16 15 Si 0.97 40.53 29.54 68.60 2.03 42.55 16 16 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 19 C 0.08 2.76 3.93 86.30 0.34 3.10 16 20 C -0.06 -1.77 0.84 -52.18 -0.04 -1.81 16 21 C -0.13 -3.31 8.25 71.98 0.59 -2.71 16 22 C -0.13 -3.12 8.47 71.98 0.61 -2.52 16 23 C -0.14 -4.07 7.02 71.98 0.51 -3.56 16 24 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.61 5.81 -2.39 -0.01 1.60 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.11 3.05 8.09 -2.39 -0.02 3.03 16 31 H -0.03 -1.45 8.12 -2.38 -0.02 -1.47 16 32 H 0.01 0.32 8.05 -2.39 -0.02 0.30 16 33 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.09 3.59 6.61 -2.39 -0.02 3.57 16 35 H 0.04 1.49 7.37 -2.39 -0.02 1.47 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.56 5.51 -2.39 -0.01 1.55 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 42 H 0.03 1.06 5.02 -2.38 -0.01 1.05 16 43 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 44 H 0.04 1.40 7.30 -2.39 -0.02 1.38 16 Total: -1.00 -60.92 348.31 5.74 -55.18 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.97 Total: 14.12 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.55 Total: -2.75 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -2.81 Total: -109.10 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -60.92 5.74 -55.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332952837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.788 kcal (2) G-P(sol) polarization free energy of solvation -60.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds