Wall clock time and date at job start Tue Mar 31 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47334 * 2 1 4 4 N 1.46507 * 109.47244 * 119.99839 * 2 1 3 5 5 N 1.40588 * 127.37665 * 300.21263 * 4 2 1 6 6 N 1.28915 * 106.81412 * 180.02562 * 5 4 2 7 7 N 1.28429 * 110.31448 * 359.72245 * 6 5 4 8 8 C 1.31472 * 110.50568 * 0.45945 * 7 6 5 9 9 N 1.38381 * 126.43683 * 179.81261 * 8 7 6 10 10 C 1.46900 * 111.00127 * 99.52122 * 9 8 7 11 11 C 1.50702 * 109.47426 * 164.21714 * 10 9 8 12 12 H 1.07991 * 119.99969 * 355.06565 * 11 10 9 13 13 C 1.37880 * 119.99849 * 175.05734 * 11 10 9 14 14 N 1.31515 * 119.99895 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99690 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47311 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47446 * 119.99884 * 15 13 11 18 18 H 1.48505 * 109.47120 * 240.00030 * 15 13 11 19 19 C 1.46907 * 111.00065 * 335.56863 * 9 8 7 20 20 C 1.52997 * 109.47030 * 285.91825 * 19 9 8 21 21 C 1.52993 * 109.47321 * 66.09989 * 20 19 9 22 22 C 1.53002 * 109.46899 * 186.10012 * 20 19 9 23 23 C 1.53001 * 109.47078 * 306.09755 * 20 19 9 24 24 H 1.08999 * 109.47585 * 300.00330 * 1 2 3 25 25 H 1.09003 * 109.47104 * 60.00527 * 1 2 3 26 26 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47585 * 239.99670 * 2 1 3 28 28 H 1.09005 * 109.46832 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46870 * 299.99311 * 3 2 1 30 30 H 1.08994 * 109.47424 * 59.99643 * 3 2 1 31 31 H 1.09006 * 109.46794 * 44.21960 * 10 9 8 32 32 H 1.09001 * 109.47131 * 284.22102 * 10 9 8 33 33 H 0.97008 * 119.99592 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46818 * 45.91730 * 19 9 8 35 35 H 1.09001 * 109.46769 * 165.91706 * 19 9 8 36 36 H 1.09006 * 109.47169 * 53.03644 * 21 20 19 37 37 H 1.09003 * 109.47565 * 173.03514 * 21 20 19 38 38 H 1.08998 * 109.47186 * 293.03896 * 21 20 19 39 39 H 1.09001 * 109.46830 * 60.00038 * 22 20 19 40 40 H 1.09003 * 109.46734 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.46933 * 299.99919 * 22 20 19 42 42 H 1.09005 * 109.46934 * 65.04219 * 23 20 19 43 43 H 1.08998 * 109.47108 * 185.03948 * 23 20 19 44 44 H 1.09000 * 109.47451 * 305.04209 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7728 -0.3505 2.5381 6 7 2.3904 -1.2200 3.2622 7 7 2.9934 -2.0740 2.5162 8 6 2.8026 -1.7920 1.2463 9 7 3.3048 -2.4933 0.1642 10 6 2.2892 -3.3948 -0.3961 11 6 2.7176 -3.8422 -1.7699 12 1 3.6099 -3.4307 -2.2180 13 6 1.9704 -4.7769 -2.4547 14 7 0.8835 -5.2777 -1.9092 15 14 2.5017 -5.3319 -4.1573 16 1 3.7483 -4.6227 -4.5426 17 1 2.7481 -6.7963 -4.1463 18 1 1.4310 -5.0174 -5.1371 19 6 4.5190 -3.2331 0.5339 20 6 5.6868 -2.2556 0.6809 21 6 5.4289 -1.3281 1.8700 22 6 6.9804 -3.0382 0.9156 23 6 5.8189 -1.4231 -0.5960 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.3363 -2.8701 -0.4655 32 1 2.1787 -4.2648 0.2513 33 1 0.3580 -5.9356 -2.3909 34 1 4.3560 -3.7494 1.4799 35 1 4.7508 -3.9620 -0.2427 36 1 5.2123 -1.9249 2.7561 37 1 6.3122 -0.7157 2.0515 38 1 4.5785 -0.6829 1.6498 39 1 7.1641 -3.6989 0.0684 40 1 7.8124 -2.3417 1.0200 41 1 6.8862 -3.6312 1.8253 42 1 4.9338 -0.7981 -0.7154 43 1 6.7038 -0.7904 -0.5273 44 1 5.9131 -2.0876 -1.4549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335327894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:10 Heat of formation + Delta-G solvation = 115.588380 kcal Electronic energy + Delta-G solvation = -24254.300472 eV Core-core repulsion = 21051.656964 eV Total energy + Delta-G solvation = -3202.643508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.50395 -38.35689 -36.37600 -35.04257 -32.83397 -31.34203 -30.67111 -27.49407 -27.22515 -26.89523 -26.79648 -25.39397 -24.07562 -22.59951 -21.00444 -20.36987 -18.52933 -17.01043 -16.62118 -16.11175 -15.51989 -14.93949 -14.57543 -14.32797 -14.17636 -13.72687 -13.35647 -13.07347 -13.00719 -12.76747 -12.30257 -12.25255 -12.11299 -12.08207 -11.84790 -11.62747 -11.47048 -11.35788 -11.22527 -11.03283 -10.93923 -10.85718 -10.59823 -10.52561 -10.29452 -10.18606 -10.10997 -9.86386 -9.71425 -9.28976 -8.68110 -7.92756 -6.27190 -4.32126 1.62063 2.27089 2.89666 3.17442 3.26311 3.29538 4.11403 4.34221 4.59736 4.95092 5.03795 5.08895 5.12312 5.18483 5.26118 5.31981 5.47675 5.55859 5.72487 5.75568 5.83741 5.89573 5.92041 5.93998 6.03238 6.10564 6.16783 6.18876 6.21602 6.25428 6.30835 6.36518 6.46580 6.57794 6.61215 6.73009 6.82356 6.86862 6.95263 7.45083 7.52572 7.78709 8.09077 8.75151 9.10724 9.33922 10.83082 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.007623 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.783392 B = 3672.438375 C = 4749.749519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 C -0.157 4.157 4 N -0.376 5.376 5 N -0.109 5.109 6 N -0.047 5.047 7 N -0.370 5.370 8 C 0.447 3.553 9 N -0.456 5.456 10 C 0.201 3.799 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.902 3.098 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.077 3.923 20 C -0.068 4.068 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.126 4.126 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 9.059 1.242 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 C -0.215 4.215 4 N -0.176 5.176 5 N -0.096 5.096 6 N -0.043 5.043 7 N -0.230 5.230 8 C 0.082 3.918 9 N -0.181 5.181 10 C 0.078 3.922 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.729 3.271 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.050 4.050 20 C -0.068 4.068 21 C -0.194 4.194 22 C -0.194 4.194 23 C -0.184 4.184 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.027 9.483 2.159 10.949 hybrid contribution -0.152 -0.818 -1.433 1.657 sum 4.875 8.665 0.726 9.969 Atomic orbital electron populations 1.22134 0.92917 1.03645 1.03148 1.21595 0.95784 0.93836 0.83951 1.22106 1.01883 0.94171 1.03299 1.51530 1.37743 1.20618 1.07672 1.82335 1.22457 1.21200 0.83656 1.77764 1.03934 0.98756 1.23830 1.74906 1.25968 1.22831 0.99297 1.23465 0.88505 0.88200 0.91633 1.59221 1.08220 1.30513 1.20192 1.20005 0.87742 0.88888 0.95546 1.21018 1.11253 1.23627 0.99596 0.91020 1.24979 0.94811 0.95788 0.98564 1.69966 1.15481 1.29305 1.38148 0.86373 0.78757 0.78543 0.83403 1.19413 1.20862 1.20901 1.22247 0.86305 0.94782 1.01632 1.20601 0.94751 0.95726 0.95731 1.22147 0.99711 0.99016 0.98528 1.21790 0.96143 0.99781 1.01671 1.21696 1.00498 0.99450 0.96722 0.91471 0.90270 0.91481 0.85921 0.91999 0.90296 0.91400 0.95293 0.96534 0.92536 0.92470 0.88145 0.91090 0.94016 0.94179 0.92439 0.92988 0.92694 0.92350 0.94209 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.15 0.35 -1.80 16 2 C 0.15 2.22 3.77 -67.93 -0.26 1.96 16 3 C -0.16 -1.84 9.49 37.16 0.35 -1.49 16 4 N -0.38 -6.72 3.32 -55.35 -0.18 -6.90 16 5 N -0.11 -2.06 13.85 60.35 0.84 -1.22 16 6 N -0.05 -0.94 13.38 60.35 0.81 -0.14 16 7 N -0.37 -7.53 8.33 30.09 0.25 -7.28 16 8 C 0.45 8.72 4.19 -320.42 -1.34 7.38 16 9 N -0.46 -8.99 3.25 -176.22 -0.57 -9.57 16 10 C 0.20 4.73 4.67 -4.98 -0.02 4.70 16 11 C -0.52 -12.75 8.30 -34.44 -0.29 -13.04 16 12 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 15 Si 0.90 19.81 29.54 -169.99 -5.02 14.78 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.08 1.41 3.91 -3.82 -0.01 1.40 16 20 C -0.07 -1.04 0.84 -154.51 -0.13 -1.17 16 21 C -0.14 -2.19 6.82 37.15 0.25 -1.94 16 22 C -0.14 -1.79 8.47 37.16 0.31 -1.47 16 23 C -0.13 -1.89 8.15 37.16 0.30 -1.59 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.12 1.94 7.84 -51.93 -0.41 1.53 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.72 7.97 -51.93 -0.41 0.31 16 32 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.06 1.09 7.32 -51.93 -0.38 0.71 16 35 H 0.10 1.91 7.12 -51.93 -0.37 1.55 16 36 H 0.07 1.23 6.94 -51.93 -0.36 0.87 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.71 5.59 -51.93 -0.29 0.42 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.94 7.63 -51.93 -0.40 0.54 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -27.34 352.10 -6.07 -33.41 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.65 Total: 0.84 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.58 Total: -5.56 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 1.87 Total: -48.77 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.34 -6.07 -33.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335327894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.995 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds