Wall clock time and date at job start Tue Mar 31 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46547 * 2 1 4 4 C 1.53002 * 109.47450 * 119.99948 * 2 1 3 5 5 N 1.46898 * 109.47039 * 59.99891 * 4 2 1 6 6 C 1.46892 * 111.00039 * 193.95193 * 5 4 2 7 7 C 1.50702 * 109.47120 * 75.74936 * 6 5 4 8 8 H 1.08005 * 119.99591 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00402 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00299 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99811 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46936 * 89.99991 * 11 9 7 13 13 H 1.48495 * 109.47024 * 209.99710 * 11 9 7 14 14 H 1.48499 * 109.47428 * 330.00022 * 11 9 7 15 15 C 1.38386 * 110.99282 * 70.00169 * 5 4 2 16 16 N 1.31478 * 126.44261 * 26.03223 * 15 5 4 17 17 N 1.28421 * 110.50754 * 179.81031 * 16 15 5 18 18 N 1.28913 * 110.31780 * 0.46152 * 17 16 15 19 19 N 1.35319 * 126.43706 * 206.33659 * 15 5 4 20 20 C 1.46493 * 127.37929 * 359.97438 * 19 15 5 21 21 C 1.53003 * 109.47607 * 17.53052 * 20 19 15 22 22 C 1.52995 * 109.47147 * 137.53221 * 20 19 15 23 23 C 1.52997 * 109.47211 * 257.53039 * 20 19 15 24 24 H 1.09002 * 109.47518 * 299.99321 * 1 2 3 25 25 H 1.08992 * 109.47450 * 60.00185 * 1 2 3 26 26 H 1.09002 * 109.46508 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47518 * 240.00679 * 2 1 3 28 28 H 1.09003 * 109.46594 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47595 * 299.99964 * 3 2 1 30 30 H 1.08998 * 109.47203 * 60.00647 * 3 2 1 31 31 H 1.08997 * 109.46865 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46803 * 300.00378 * 4 2 1 33 33 H 1.08999 * 109.47482 * 195.74337 * 6 5 4 34 34 H 1.08997 * 109.47381 * 315.74611 * 6 5 4 35 35 H 0.97002 * 120.00330 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.47006 * 53.39244 * 21 20 19 37 37 H 1.08999 * 109.47466 * 173.39799 * 21 20 19 38 38 H 1.09005 * 109.46882 * 293.39543 * 21 20 19 39 39 H 1.08996 * 109.47520 * 59.99574 * 22 20 19 40 40 H 1.09003 * 109.47309 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.46977 * 299.99793 * 22 20 19 42 42 H 1.09005 * 109.47467 * 57.03222 * 23 20 19 43 43 H 1.09001 * 109.47717 * 177.03819 * 23 20 19 44 44 H 1.09001 * 109.47000 * 297.03309 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -2.1062 1.2493 6 6 1.7325 -2.7289 2.5672 7 6 0.6885 -2.2044 3.5191 8 1 -0.0373 -1.4805 3.1790 9 6 0.6599 -2.6486 4.8240 10 7 -0.2509 -2.1904 5.6548 11 14 1.9148 -3.9011 5.4119 12 1 3.1094 -3.1945 5.9400 13 1 1.3171 -4.7339 6.4863 14 1 2.3157 -4.7706 4.2768 15 6 2.1681 -2.8505 0.2595 16 7 3.3541 -2.6254 -0.2615 17 7 3.6279 -3.5069 -1.1544 18 7 2.6514 -4.3398 -1.2754 19 7 1.6626 -3.9433 -0.3580 20 6 0.3637 -4.5777 -0.1207 21 6 -0.5534 -3.6014 0.6189 22 6 -0.2705 -4.9579 -1.4601 23 6 0.5581 -5.8364 0.7270 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1301 -0.7208 1.2494 32 1 1.6767 -0.2074 2.1392 33 1 1.6299 -3.8102 2.4755 34 1 2.7250 -2.4891 2.9484 35 1 -0.2707 -2.5027 6.5730 36 1 -0.5982 -2.6598 0.0718 37 1 -1.5541 -4.0273 0.6920 38 1 -0.1610 -3.4218 1.6199 39 1 0.3828 -5.6533 -1.9871 40 1 -1.2372 -5.4295 -1.2837 41 1 -0.4090 -4.0610 -2.0641 42 1 1.0578 -5.5731 1.6593 43 1 -0.4130 -6.2795 0.9478 44 1 1.1681 -6.5537 0.1778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340273358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:47 Heat of formation + Delta-G solvation = 119.498916 kcal Electronic energy + Delta-G solvation = -24457.614954 eV Core-core repulsion = 21255.141019 eV Total energy + Delta-G solvation = -3202.473935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.57555 -38.23339 -37.16350 -34.45775 -32.80312 -31.75613 -30.78402 -28.18032 -27.41716 -27.31492 -26.60164 -25.31294 -23.80155 -22.24992 -21.05403 -20.12126 -19.41233 -17.22304 -16.52291 -16.21811 -15.52655 -15.04396 -14.75051 -14.14615 -14.02055 -13.93010 -13.85128 -13.18475 -12.91504 -12.66536 -12.51800 -12.37187 -12.12626 -12.06796 -11.86686 -11.64879 -11.58457 -11.50342 -11.25113 -11.19182 -11.00972 -10.63463 -10.56873 -10.45925 -10.35638 -10.29263 -10.11289 -9.91712 -9.78098 -9.51044 -8.82980 -8.07767 -6.30760 -4.32145 1.49469 2.14899 2.75276 3.11565 3.18970 3.22718 4.02819 4.19012 4.50236 4.82526 4.91810 4.97561 5.03218 5.16656 5.30072 5.41515 5.44046 5.54800 5.67497 5.70494 5.81647 5.85467 5.91177 5.95339 5.97212 6.02397 6.04425 6.09491 6.16202 6.20251 6.24739 6.33564 6.45275 6.45937 6.48805 6.65144 6.70094 6.80330 7.04289 7.20100 7.24683 7.60066 8.28290 8.76857 8.98398 9.27688 10.80592 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.008617 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.653373 B = 3248.462474 C = 4195.144193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.141 4.141 4 C 0.069 3.931 5 N -0.442 5.442 6 C 0.167 3.833 7 C -0.518 4.518 8 H 0.091 0.909 9 C 0.082 3.918 10 N -0.885 5.885 11 Si 0.865 3.135 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.435 3.565 16 N -0.371 5.371 17 N -0.047 5.047 18 N -0.105 5.105 19 N -0.367 5.367 20 C 0.179 3.821 21 C -0.174 4.174 22 C -0.149 4.149 23 C -0.160 4.160 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.031 0.969 34 H 0.008 0.992 35 H 0.268 0.732 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -1.380 -9.678 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.058 4.058 5 N -0.167 5.167 6 C 0.043 3.957 7 C -0.556 4.556 8 H 0.109 0.891 9 C -0.123 4.123 10 N -0.522 5.522 11 Si 0.691 3.309 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.070 3.930 16 N -0.231 5.231 17 N -0.043 5.043 18 N -0.092 5.092 19 N -0.166 5.166 20 C 0.095 3.905 21 C -0.232 4.232 22 C -0.207 4.207 23 C -0.218 4.218 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.786 -1.680 -10.414 10.578 hybrid contribution 0.565 -0.776 1.080 1.445 sum -0.221 -2.456 -9.334 9.655 Atomic orbital electron populations 1.21862 0.94736 1.02637 1.00744 1.21099 0.96538 0.95744 0.97740 1.21747 1.00889 0.95740 1.01560 1.22297 0.98591 0.85239 0.99659 1.59388 1.51004 1.02426 1.03893 1.20474 0.97824 0.94860 0.82541 1.20783 1.14469 1.27043 0.93288 0.89070 1.24769 0.95212 0.95884 0.96405 1.69847 1.33677 1.43071 1.05593 0.87036 0.82305 0.82278 0.79247 1.19825 1.20691 1.19440 1.23605 0.87613 0.86771 0.95037 1.74856 1.12030 1.23351 1.12813 1.77787 1.17606 0.98512 1.10412 1.82354 0.94700 1.20428 1.11714 1.51788 1.16121 1.22044 1.26695 1.21071 0.77961 0.94221 0.97198 1.22688 0.97823 0.97727 1.04927 1.22082 1.01115 1.02433 0.95038 1.22268 1.03498 0.95870 1.00168 0.92268 0.94158 0.91455 0.92247 0.92775 0.93023 0.92358 0.92698 0.87777 0.95154 0.97433 0.92199 0.90893 0.91084 0.86217 0.91298 0.90313 0.91998 0.91373 0.89905 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.04 37.16 0.34 -1.76 16 2 C -0.09 -1.41 2.86 -90.62 -0.26 -1.67 16 3 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 4 C 0.07 1.21 4.01 -3.82 -0.02 1.20 16 5 N -0.44 -8.31 1.55 -176.23 -0.27 -8.59 16 6 C 0.17 3.60 2.60 -4.98 -0.01 3.58 16 7 C -0.52 -12.51 7.96 -34.44 -0.27 -12.79 16 8 H 0.09 2.37 8.05 -52.48 -0.42 1.95 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.88 -24.24 13.96 55.43 0.77 -23.47 16 11 Si 0.86 19.64 27.47 -169.99 -4.67 14.97 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 15 C 0.44 8.30 5.62 -320.39 -1.80 6.50 16 16 N -0.37 -7.47 10.88 30.10 0.33 -7.14 16 17 N -0.05 -0.94 13.38 60.35 0.81 -0.13 16 18 N -0.11 -1.96 13.55 60.35 0.82 -1.14 16 19 N -0.37 -6.47 3.41 -49.14 -0.17 -6.63 16 20 C 0.18 2.63 1.37 -131.83 -0.18 2.45 16 21 C -0.17 -2.67 7.13 37.16 0.26 -2.41 16 22 C -0.15 -1.78 8.51 37.15 0.32 -1.46 16 23 C -0.16 -2.23 8.80 37.16 0.33 -1.90 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.05 4.79 -51.93 -0.25 0.81 16 27 H 0.06 1.00 7.30 -51.93 -0.38 0.62 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.99 7.50 -51.93 -0.39 0.60 16 32 H 0.10 1.92 7.37 -51.93 -0.38 1.53 16 33 H 0.03 0.67 5.11 -51.93 -0.27 0.41 16 34 H 0.01 0.18 7.43 -51.93 -0.39 -0.21 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.07 1.14 5.02 -51.93 -0.26 0.88 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.12 2.22 3.80 -51.93 -0.20 2.02 16 39 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.11 6.73 -51.93 -0.35 0.76 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -26.97 338.40 -5.43 -32.40 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.10 Total: 2.41 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.05 Total: -7.78 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 2.29 Total: -47.10 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.97 -5.43 -32.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340273358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.903 kcal (2) G-P(sol) polarization free energy of solvation -26.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds