Wall clock time and date at job start Tue Mar 31 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47371 * 2 1 4 4 C 1.52998 * 109.46957 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46854 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47261 * 304.99526 * 5 4 3 7 7 C 1.53002 * 109.47486 * 64.99731 * 5 4 3 8 8 C 1.52999 * 109.46940 * 61.50885 * 7 5 4 9 9 C 1.53005 * 109.47209 * 184.99856 * 5 4 3 10 10 N 1.46501 * 109.47241 * 175.60887 * 9 5 4 11 11 N 1.40591 * 127.38397 * 86.23147 * 10 9 5 12 12 N 1.28900 * 106.83980 * 179.97438 * 11 10 9 13 13 N 1.28422 * 110.34929 * 359.97438 * 12 11 10 14 14 C 1.31562 * 110.50033 * 359.74543 * 13 12 11 15 15 N 1.38230 * 126.45971 * 180.29477 * 14 13 12 16 16 C 1.46502 * 120.00035 * 185.55663 * 15 14 13 17 17 C 1.36928 * 119.99811 * 5.55448 * 15 14 13 18 18 H 1.08006 * 119.99955 * 338.88489 * 17 15 14 19 19 C 1.38800 * 119.99905 * 158.88511 * 17 15 14 20 20 N 1.31566 * 119.99996 * 342.99699 * 19 17 15 21 21 Si 1.86799 * 120.00058 * 162.99500 * 19 17 15 22 22 H 1.48508 * 109.46972 * 94.98505 * 21 19 17 23 23 H 1.48496 * 109.47381 * 214.98477 * 21 19 17 24 24 H 1.48500 * 109.47421 * 334.99031 * 21 19 17 25 25 H 1.09003 * 109.46443 * 300.00259 * 1 2 3 26 26 H 1.09001 * 109.47011 * 59.99717 * 1 2 3 27 27 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46607 * 240.00271 * 2 1 3 29 29 H 1.09001 * 109.47011 * 120.00283 * 2 1 3 30 30 H 1.09001 * 109.47284 * 300.00116 * 3 2 1 31 31 H 1.09005 * 109.46932 * 59.99998 * 3 2 1 32 32 H 1.08995 * 109.47272 * 299.99709 * 4 3 2 33 33 H 1.08993 * 109.47159 * 60.00231 * 4 3 2 34 34 H 1.08997 * 109.47128 * 181.50707 * 7 5 4 35 35 H 1.08998 * 109.46953 * 301.50408 * 7 5 4 36 36 H 1.08997 * 109.47540 * 59.15199 * 8 7 5 37 37 H 1.08995 * 109.47193 * 179.15849 * 8 7 5 38 38 H 1.09003 * 109.46879 * 299.15125 * 8 7 5 39 39 H 1.08993 * 109.47045 * 295.61613 * 9 5 4 40 40 H 1.08999 * 109.46927 * 55.60845 * 9 5 4 41 41 H 1.09002 * 109.47000 * 35.75324 * 16 15 14 42 42 H 1.09005 * 109.46975 * 155.75008 * 16 15 14 43 43 H 1.08997 * 109.47036 * 275.75510 * 16 15 14 44 44 H 0.96995 * 119.99763 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 0.0000 6 1 3.6453 3.4244 -0.8413 7 6 3.6759 3.5682 1.3079 8 6 4.3171 2.8332 2.4867 9 6 5.6050 2.8867 -0.1263 10 7 6.0846 4.2670 -0.2312 11 7 6.3869 5.1480 0.8220 12 7 6.7733 6.2539 0.2844 13 7 6.7466 6.1613 -0.9962 14 6 6.3386 4.9656 -1.3632 15 7 6.1934 4.5094 -2.6600 16 6 5.6113 3.1886 -2.9110 17 6 6.5936 5.2920 -3.7099 18 1 6.6974 6.3591 -3.5792 19 6 6.8659 4.7140 -4.9421 20 7 7.0686 3.4170 -5.0298 21 14 6.9443 5.7774 -6.4758 22 1 8.3545 6.1601 -6.7412 23 1 6.4117 5.0159 -7.6340 24 1 6.1294 7.0019 -6.2714 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.9338 0.9284 0.8891 33 1 3.9330 0.9287 -0.8908 34 1 4.0161 4.6037 1.2970 35 1 2.5911 3.5432 1.4107 36 1 5.4014 2.8452 2.3760 37 1 4.0413 3.3289 3.4174 38 1 3.9653 1.8017 2.5064 39 1 6.0430 2.4156 0.7535 40 1 5.8963 2.3321 -1.0183 41 1 4.8296 2.9908 -2.1776 42 1 5.1836 3.1646 -3.9133 43 1 6.3876 2.4279 -2.8288 44 1 7.2593 3.0131 -5.8908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351031934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:10 Heat of formation + Delta-G solvation = 111.345317 kcal Electronic energy + Delta-G solvation = -23277.040010 eV Core-core repulsion = 20074.212509 eV Total energy + Delta-G solvation = -3202.827501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47856 -38.22641 -36.60163 -34.87266 -32.90749 -31.90759 -30.16581 -29.75298 -28.34739 -26.63303 -25.10711 -23.91178 -23.54314 -21.81915 -21.12434 -20.62675 -19.01899 -17.45491 -16.59532 -15.92975 -15.62666 -15.47742 -14.99635 -14.48943 -14.29234 -13.93904 -13.71963 -13.29231 -13.15809 -12.83895 -12.64742 -12.44511 -12.27623 -12.07014 -11.57731 -11.47338 -11.32830 -11.20954 -11.02975 -10.94862 -10.86179 -10.80236 -10.61201 -10.49069 -10.40546 -10.29477 -10.24306 -9.98134 -9.39979 -9.18609 -8.91270 -7.41425 -6.56910 -4.00050 2.39742 2.88764 3.10029 3.16786 3.24666 3.79502 3.96203 4.43076 4.63196 4.74901 4.84221 4.87165 4.91154 5.10074 5.13614 5.24939 5.40682 5.48723 5.52485 5.61931 5.63811 5.73675 5.76118 5.82125 5.84867 5.90902 5.98479 6.00629 6.09833 6.16987 6.23695 6.29629 6.35313 6.43166 6.47557 6.55858 6.64568 6.78951 6.88175 7.20133 7.37704 7.86982 8.40985 9.00268 9.21781 10.02066 10.47406 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.005362 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.383633 B = 5220.309961 C = 6671.377737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.107 4.107 6 H 0.075 0.925 7 C -0.115 4.115 8 C -0.150 4.150 9 C 0.129 3.871 10 N -0.444 5.444 11 N -0.153 5.153 12 N -0.039 5.039 13 N -0.398 5.398 14 C 0.462 3.538 15 N -0.403 5.403 16 C 0.109 3.891 17 C -0.293 4.293 18 H 0.109 0.891 19 C 0.029 3.971 20 N -0.877 5.877 21 Si 0.934 3.066 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.266 1.266 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -9.268 6.393 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.127 4.127 6 H 0.093 0.907 7 C -0.153 4.153 8 C -0.207 4.207 9 C 0.005 3.995 10 N -0.251 5.251 11 N -0.143 5.143 12 N -0.035 5.035 13 N -0.269 5.269 14 C 0.103 3.897 15 N -0.108 5.108 16 C -0.035 4.035 17 C -0.422 4.422 18 H 0.127 0.873 19 C -0.176 4.176 20 N -0.515 5.515 21 Si 0.760 3.240 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.190 1.190 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.650 -8.554 6.952 14.650 hybrid contribution -0.164 -0.627 -1.363 1.509 sum -9.813 -9.181 5.589 14.554 Atomic orbital electron populations 1.21780 0.96154 1.01326 1.01769 1.21534 0.95624 0.97133 1.01913 1.21637 0.95235 0.96508 1.02287 1.21624 0.95665 0.95522 1.02450 1.21705 0.94765 0.96923 0.99267 0.90683 1.21484 0.99725 1.00461 0.93629 1.21819 1.01548 0.99587 0.97725 1.22031 0.94005 0.79022 1.04415 1.50677 1.57809 1.13112 1.03487 1.82085 1.26472 0.97073 1.08666 1.77521 1.08757 1.15334 1.01929 1.74703 1.32595 1.15655 1.03915 1.21944 0.94911 0.88925 0.83936 1.41745 1.54807 1.16618 0.97660 1.21983 0.96114 0.83416 1.01950 1.19812 1.44211 0.91916 0.86303 0.87294 1.25372 0.95872 0.96468 0.99846 1.70084 1.44751 1.10417 1.26257 0.85769 0.78913 0.79589 0.79716 1.20121 1.20656 1.18995 0.92890 0.92772 0.93008 0.92020 0.92192 0.92010 0.91729 0.91257 0.91620 0.91275 0.92307 0.92036 0.93169 0.93036 0.89203 0.88221 0.94160 0.89233 0.92898 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.16 4.97 -26.73 -0.13 -1.29 16 4 C -0.11 -1.20 4.50 -26.73 -0.12 -1.32 16 5 C -0.11 -1.44 1.68 -90.62 -0.15 -1.59 16 6 H 0.07 1.16 6.93 -51.93 -0.36 0.80 16 7 C -0.12 -1.56 5.30 -26.73 -0.14 -1.70 16 8 C -0.15 -1.80 9.22 37.16 0.34 -1.46 16 9 C 0.13 2.04 4.74 -4.04 -0.02 2.02 16 10 N -0.44 -9.18 3.33 -61.85 -0.21 -9.39 16 11 N -0.15 -3.38 12.84 60.35 0.77 -2.61 16 12 N -0.04 -0.96 13.38 60.35 0.81 -0.15 16 13 N -0.40 -10.27 11.63 30.10 0.35 -9.92 16 14 C 0.46 11.11 8.37 -320.36 -2.68 8.43 16 15 N -0.40 -9.73 3.10 -123.98 -0.38 -10.12 16 16 C 0.11 2.23 7.26 59.85 0.43 2.66 16 17 C -0.29 -7.56 9.46 -15.07 -0.14 -7.70 16 18 H 0.11 2.91 7.62 -52.48 -0.40 2.51 16 19 C 0.03 0.72 4.95 -17.46 -0.09 0.63 16 20 N -0.88 -21.72 10.89 55.49 0.60 -21.11 16 21 Si 0.93 19.43 29.59 -169.99 -5.03 14.40 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16 32 H 0.07 0.67 6.24 -51.93 -0.32 0.35 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.17 6.87 -51.93 -0.36 0.81 16 35 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 36 H 0.06 0.82 6.26 -51.93 -0.32 0.50 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.53 6.40 -51.93 -0.33 0.19 16 39 H 0.09 1.30 6.15 -51.93 -0.32 0.98 16 40 H 0.10 1.57 4.81 -51.93 -0.25 1.32 16 41 H 0.04 0.70 3.88 -51.93 -0.20 0.50 16 42 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 43 H 0.05 1.11 7.29 -51.93 -0.38 0.73 16 44 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -28.04 337.86 -7.26 -35.30 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.78 Total: 1.91 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.49 Total: -3.41 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 1.95 Total: -53.29 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.04 -7.26 -35.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351031934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.645 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds