Wall clock time and date at job start Tue Mar 31 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46810 * 2 1 4 4 C 1.53010 * 109.47031 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47094 * 185.21143 * 4 3 2 6 6 H 1.09003 * 109.46857 * 54.84568 * 5 4 3 7 7 C 1.53003 * 109.46690 * 294.84811 * 5 4 3 8 8 C 1.52996 * 109.46939 * 298.34521 * 7 5 4 9 9 C 1.52996 * 109.46799 * 174.85031 * 5 4 3 10 10 N 1.46506 * 109.46949 * 186.01363 * 9 5 4 11 11 N 1.40581 * 127.38584 * 272.93853 * 10 9 5 12 12 N 1.28899 * 106.84219 * 179.97438 * 11 10 9 13 13 N 1.28422 * 110.34797 * 0.02562 * 12 11 10 14 14 C 1.31559 * 110.49810 * 359.74265 * 13 12 11 15 15 N 1.38230 * 126.45836 * 180.29634 * 14 13 12 16 16 C 1.46501 * 120.00157 * 174.40734 * 15 14 13 17 17 C 1.36931 * 119.99676 * 354.40496 * 15 14 13 18 18 H 1.08005 * 120.00241 * 19.41579 * 17 15 14 19 19 C 1.38803 * 120.00019 * 199.40328 * 17 15 14 20 20 N 1.31573 * 119.99432 * 22.43583 * 19 17 15 21 21 Si 1.86798 * 120.00407 * 202.42753 * 19 17 15 22 22 H 1.48500 * 109.46859 * 94.99242 * 21 19 17 23 23 H 1.48496 * 109.47147 * 214.99500 * 21 19 17 24 24 H 1.48502 * 109.47092 * 334.99611 * 21 19 17 25 25 H 1.09003 * 109.46917 * 59.99839 * 1 2 3 26 26 H 1.08998 * 109.46629 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.46914 * 299.99647 * 1 2 3 28 28 H 1.09007 * 109.47225 * 240.00450 * 2 1 3 29 29 H 1.08999 * 109.47366 * 120.00006 * 2 1 3 30 30 H 1.09003 * 109.47351 * 60.00300 * 3 2 1 31 31 H 1.09003 * 109.47512 * 299.99796 * 3 2 1 32 32 H 1.08993 * 109.46699 * 65.20783 * 4 3 2 33 33 H 1.09006 * 109.46709 * 305.20921 * 4 3 2 34 34 H 1.09004 * 109.46491 * 178.35099 * 7 5 4 35 35 H 1.08994 * 109.46967 * 58.35003 * 7 5 4 36 36 H 1.09010 * 109.46855 * 180.30860 * 8 7 5 37 37 H 1.08998 * 109.47599 * 300.30469 * 8 7 5 38 38 H 1.09002 * 109.47114 * 60.31435 * 8 7 5 39 39 H 1.09003 * 109.46861 * 306.01101 * 9 5 4 40 40 H 1.09000 * 109.47342 * 66.01265 * 9 5 4 41 41 H 1.09005 * 109.46920 * 85.68510 * 16 15 14 42 42 H 1.09003 * 109.46936 * 205.68417 * 16 15 14 43 43 H 1.08994 * 109.46923 * 325.68465 * 16 15 14 44 44 H 0.97001 * 119.99222 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0801 2.8791 0.1304 6 1 3.6436 3.3402 1.0164 7 6 3.6779 3.6782 -1.1109 8 6 4.3241 3.0551 -2.3499 9 6 5.6046 2.8693 0.2588 10 7 6.0808 4.2284 0.5278 11 7 6.3978 5.2236 -0.4132 12 7 6.7736 6.2612 0.2529 13 7 6.7268 6.0234 1.5140 14 6 6.3050 4.7972 1.7362 15 7 6.1262 4.2011 2.9705 16 6 5.5320 2.8649 3.0595 17 6 6.5045 4.8594 4.1100 18 1 6.6432 5.9304 4.0941 19 6 6.7095 4.1504 5.2855 20 7 6.9784 2.8633 5.2390 21 14 6.6039 5.0236 6.9335 22 1 5.2373 4.8632 7.4919 23 1 7.5939 4.4341 7.8703 24 1 6.8966 6.4677 6.7482 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 1.0118 -0.9338 33 1 3.9337 0.8499 0.8388 34 1 4.0158 4.7091 -1.0045 35 1 2.5935 3.6605 -1.2188 36 1 4.0420 3.6276 -3.2336 37 1 5.4084 3.0679 -2.2396 38 1 3.9820 2.0259 -2.4594 39 1 5.8958 2.2133 1.0792 40 1 6.0452 2.5070 -0.6700 41 1 6.3108 2.1121 2.9371 42 1 5.0578 2.7423 4.0332 43 1 4.7854 2.7463 2.2743 44 1 7.1221 2.3680 6.0605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351031935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:12 Heat of formation + Delta-G solvation = 111.093111 kcal Electronic energy + Delta-G solvation = -23293.790398 eV Core-core repulsion = 20090.951960 eV Total energy + Delta-G solvation = -3202.838438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47578 -38.24288 -36.59510 -34.87699 -32.91624 -31.92237 -30.17529 -29.76286 -28.34819 -26.61741 -25.11675 -23.93437 -23.55116 -21.81831 -21.12985 -20.61821 -19.03310 -17.44720 -16.61935 -15.91177 -15.61805 -15.48108 -14.98835 -14.51572 -14.31907 -13.94844 -13.73834 -13.28168 -13.15422 -12.86554 -12.65849 -12.44055 -12.27066 -12.05502 -11.64502 -11.47602 -11.34199 -11.22519 -11.04526 -10.94489 -10.83762 -10.78595 -10.60950 -10.49261 -10.40723 -10.31122 -10.25646 -10.00841 -9.39636 -9.18714 -8.89508 -7.43857 -6.59191 -3.97843 2.39493 2.88762 3.10069 3.17080 3.24408 3.79609 3.95769 4.42409 4.62505 4.74280 4.82980 4.84822 4.91320 5.09573 5.12047 5.25475 5.40538 5.47546 5.51278 5.60925 5.63977 5.73274 5.75468 5.81246 5.82861 5.90766 5.98017 6.00770 6.08749 6.16793 6.23181 6.28746 6.34063 6.40520 6.46011 6.54697 6.63018 6.79101 6.83693 7.19380 7.38081 7.86443 8.40070 9.00265 9.21518 10.02471 10.45287 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.005534 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.693013 B = 5058.829137 C = 6575.477427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.115 4.115 5 C -0.108 4.108 6 H 0.076 0.924 7 C -0.115 4.115 8 C -0.150 4.150 9 C 0.130 3.870 10 N -0.444 5.444 11 N -0.154 5.154 12 N -0.039 5.039 13 N -0.397 5.397 14 C 0.460 3.540 15 N -0.402 5.402 16 C 0.106 3.894 17 C -0.297 4.297 18 H 0.111 0.889 19 C 0.031 3.969 20 N -0.871 5.871 21 Si 0.932 3.068 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.264 1.264 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -8.591 -7.461 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.127 4.127 6 H 0.094 0.906 7 C -0.153 4.153 8 C -0.207 4.207 9 C 0.006 3.994 10 N -0.251 5.251 11 N -0.144 5.144 12 N -0.035 5.035 13 N -0.268 5.268 14 C 0.102 3.898 15 N -0.107 5.107 16 C -0.037 4.037 17 C -0.426 4.426 18 H 0.129 0.871 19 C -0.175 4.175 20 N -0.508 5.508 21 Si 0.757 3.243 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.189 1.189 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.635 -7.820 -7.934 14.729 hybrid contribution -0.281 -0.788 1.298 1.544 sum -9.916 -8.608 -6.636 14.713 Atomic orbital electron populations 1.21778 0.96154 1.01335 1.01761 1.21538 0.95629 0.97123 1.01934 1.21630 0.95215 0.96505 1.02249 1.21638 0.95680 0.95518 1.02464 1.21736 0.94801 0.96643 0.99562 0.90615 1.21477 0.99757 1.00202 0.93848 1.21830 1.01516 0.99995 0.97399 1.22013 0.94011 0.79680 1.03688 1.50687 1.57990 1.13111 1.03345 1.82081 1.26475 0.93953 1.11873 1.77520 1.08911 1.18087 0.99004 1.74701 1.32241 1.12432 1.07474 1.21911 0.95057 0.90067 0.82797 1.41779 1.54364 1.15659 0.98878 1.21988 0.96467 0.83177 1.02110 1.19830 1.45635 0.93433 0.83714 0.87126 1.25341 0.95854 0.96003 1.00267 1.70137 1.43160 1.08233 1.29264 0.85805 0.78119 0.79942 0.80391 1.20214 1.20836 1.18851 0.92909 0.93004 0.92759 0.92196 0.91983 0.91986 0.91810 0.91241 0.91596 0.91293 0.92290 0.93151 0.92046 0.92983 0.88368 0.89105 0.92749 0.89727 0.93753 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.15 4.84 -26.73 -0.13 -1.28 16 4 C -0.11 -1.20 4.50 -26.72 -0.12 -1.32 16 5 C -0.11 -1.44 1.59 -90.62 -0.14 -1.59 16 6 H 0.08 1.17 6.89 -51.93 -0.36 0.81 16 7 C -0.12 -1.55 5.34 -26.73 -0.14 -1.69 16 8 C -0.15 -1.79 9.22 37.16 0.34 -1.45 16 9 C 0.13 2.05 4.76 -4.04 -0.02 2.03 16 10 N -0.44 -9.18 3.35 -61.85 -0.21 -9.39 16 11 N -0.15 -3.40 12.96 60.35 0.78 -2.62 16 12 N -0.04 -0.96 13.38 60.35 0.81 -0.15 16 13 N -0.40 -10.27 11.62 30.10 0.35 -9.92 16 14 C 0.46 11.07 8.37 -320.36 -2.68 8.39 16 15 N -0.40 -9.68 3.10 -123.99 -0.38 -10.07 16 16 C 0.11 2.16 7.30 59.85 0.44 2.60 16 17 C -0.30 -7.66 9.45 -15.07 -0.14 -7.80 16 18 H 0.11 2.97 7.63 -52.48 -0.40 2.57 16 19 C 0.03 0.76 4.82 -17.45 -0.08 0.68 16 20 N -0.87 -21.59 11.15 55.49 0.62 -20.97 16 21 Si 0.93 19.38 29.61 -169.99 -5.03 14.35 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 6.79 -51.93 -0.35 0.26 16 32 H 0.07 0.67 6.22 -51.93 -0.32 0.34 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.15 6.98 -51.93 -0.36 0.79 16 35 H 0.06 0.71 6.61 -51.93 -0.34 0.37 16 36 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.81 6.25 -51.93 -0.32 0.48 16 38 H 0.05 0.52 6.37 -51.93 -0.33 0.19 16 39 H 0.10 1.54 4.96 -51.93 -0.26 1.28 16 40 H 0.09 1.30 6.07 -51.93 -0.32 0.99 16 41 H 0.05 1.13 7.32 -51.93 -0.38 0.75 16 42 H 0.08 1.81 6.72 -51.93 -0.35 1.46 16 43 H 0.04 0.76 3.66 -51.93 -0.19 0.57 16 44 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -28.11 338.44 -7.24 -35.35 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.80 Total: 1.84 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.47 Total: -3.53 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 1.97 Total: -53.11 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.11 -7.24 -35.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351031935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.444 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds