Wall clock time and date at job start Tue Mar 31 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47246 * 179.97438 * 12 9 7 14 14 C 1.47606 * 111.05410 * 299.20518 * 13 12 9 15 15 C 1.50751 * 107.92350 * 158.80491 * 14 13 12 16 16 C 1.53455 * 112.10952 * 95.71852 * 15 14 13 17 17 C 1.54479 * 113.23676 * 299.39156 * 16 15 14 18 18 C 1.53311 * 107.54731 * 105.45128 * 17 16 15 19 19 C 1.52856 * 109.67374 * 176.21698 * 18 17 16 20 20 C 1.53012 * 109.11226 * 297.81763 * 19 18 17 21 21 C 1.52880 * 109.52875 * 59.76612 * 20 19 18 22 22 C 1.52567 * 110.32274 * 301.86247 * 21 20 19 23 23 C 1.50238 * 113.10741 * 341.79779 * 17 16 15 24 24 C 1.39634 * 111.07399 * 169.99467 * 13 12 9 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 27 27 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 28 28 H 1.08996 * 109.47407 * 59.99213 * 12 9 7 29 29 H 1.08908 * 109.97460 * 278.72107 * 14 13 12 30 30 H 1.09086 * 109.70374 * 39.33940 * 14 13 12 31 31 H 1.08914 * 109.25008 * 334.05472 * 15 14 13 32 32 H 1.09331 * 108.59936 * 216.01789 * 15 14 13 33 33 H 1.09222 * 108.91521 * 178.46525 * 16 15 14 34 34 H 1.09186 * 108.99544 * 60.44328 * 16 15 14 35 35 H 1.08538 * 110.61729 * 298.18922 * 18 17 16 36 36 H 1.09573 * 108.81433 * 57.35337 * 18 17 16 37 37 H 1.09033 * 109.45379 * 178.13004 * 19 18 17 38 38 H 1.08870 * 109.82516 * 57.91621 * 19 18 17 39 39 H 1.09014 * 109.42656 * 299.66524 * 20 19 18 40 40 H 1.09038 * 109.39560 * 179.80961 * 20 19 18 41 41 H 1.09465 * 108.92438 * 182.12925 * 21 20 19 42 42 H 1.08878 * 109.70091 * 63.46132 * 21 20 19 43 43 H 1.09104 * 109.60609 * 298.38594 * 22 21 20 44 44 H 1.09107 * 109.58632 * 178.59144 * 22 21 20 45 45 H 1.09430 * 109.55508 * 320.28262 * 23 17 16 46 46 H 1.09486 * 109.66374 * 202.38224 * 23 17 16 47 47 H 1.09799 * 107.92904 * 310.78431 * 24 13 12 48 48 H 1.08531 * 109.66444 * 67.78655 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0214 -2.6367 -0.0014 13 7 5.4904 -2.6368 -0.0014 14 6 6.0206 -1.9635 -1.2032 15 6 7.4354 -1.5344 -0.9083 16 6 8.4651 -2.5556 -1.4100 17 6 8.3088 -3.9483 -0.7601 18 6 7.6822 -4.8785 -1.8054 19 6 7.5917 -6.2971 -1.2435 20 6 9.0028 -6.8101 -0.9485 21 6 9.6780 -5.8914 0.0701 22 6 9.7286 -4.4611 -0.4583 23 6 7.5034 -3.9202 0.5079 24 6 5.9924 -3.9202 0.2237 25 1 -0.4850 0.8401 0.0004 26 1 3.7018 -0.9253 1.9982 27 1 3.6577 -3.1515 0.8880 28 1 3.6583 -3.1496 -0.8919 29 1 6.0094 -2.6492 -2.0492 30 1 5.4116 -1.0883 -1.4333 31 1 7.5522 -1.3958 0.1656 32 1 7.6191 -0.5762 -1.4017 33 1 9.4685 -2.1816 -1.1949 34 1 8.3625 -2.6617 -2.4918 35 1 6.6980 -4.5224 -2.0928 36 1 8.3216 -4.8918 -2.6950 37 1 7.1155 -6.9484 -1.9768 38 1 7.0058 -6.2942 -0.3259 39 1 9.5843 -6.8222 -1.8705 40 1 8.9434 -7.8210 -0.5441 41 1 10.6990 -6.2451 0.2451 42 1 9.1336 -5.9253 1.0124 43 1 10.3196 -4.4301 -1.3749 44 1 10.1897 -3.8118 0.2875 45 1 7.7636 -3.0292 1.0874 46 1 7.7472 -4.7956 1.1187 47 1 5.4772 -4.3358 1.0997 48 1 5.7631 -4.5561 -0.6253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351386463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:10 Heat of formation + Delta-G solvation = -65.308740 kcal Electronic energy + Delta-G solvation = -24177.401861 eV Core-core repulsion = 21038.161658 eV Total energy + Delta-G solvation = -3139.240204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54925 -37.72404 -35.59127 -33.65537 -32.21643 -31.66529 -30.95538 -29.37876 -27.38791 -25.90218 -24.33481 -23.02710 -22.73390 -20.80297 -20.22295 -19.71453 -18.03029 -17.40971 -16.04286 -15.33035 -15.12921 -14.98438 -14.78418 -14.47069 -14.22679 -13.95803 -13.72279 -13.44234 -13.05653 -12.88969 -12.61921 -12.40309 -12.26826 -11.87019 -11.80734 -11.45008 -11.34854 -11.23865 -11.05873 -10.86766 -10.76875 -10.70582 -10.56887 -10.41160 -10.29124 -10.03713 -9.80561 -9.76634 -9.68629 -9.05355 -8.63189 -8.35870 -7.51172 -6.11501 -4.22923 3.46978 3.50766 3.64027 4.40015 4.52417 4.55413 4.56676 4.65668 4.99415 5.05230 5.13586 5.21069 5.24284 5.25260 5.35671 5.40719 5.44868 5.48511 5.57135 5.65974 5.68051 5.78088 5.82509 5.88000 5.92099 5.93606 6.00493 6.02730 6.04081 6.10676 6.19061 6.21097 6.25166 6.31599 6.33627 6.39211 6.44857 6.49841 6.63126 6.67257 6.75029 7.39210 7.50388 7.78227 8.04246 8.31238 8.85285 9.12892 9.52836 10.99052 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033899 B = 0.004261 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.789995 B = 6569.881729 C = 6925.857748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.307 1.307 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.197 3.803 10 H 0.059 0.941 11 O -0.575 6.575 12 C 0.047 3.953 13 N -0.548 5.548 14 C 0.065 3.935 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.047 4.047 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.103 4.103 24 C 0.075 3.925 25 H 0.265 0.735 26 H 0.359 0.641 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.533 -10.805 -1.796 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.236 1.236 7 C -0.601 4.601 8 H 0.090 0.910 9 C 0.140 3.860 10 H 0.077 0.923 11 O -0.380 6.380 12 C -0.080 4.080 13 N -0.272 5.272 14 C -0.061 4.061 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.047 4.047 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.055 4.055 25 H 0.074 0.926 26 H 0.205 0.795 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 19.832 -10.088 -1.892 22.331 hybrid contribution -0.256 -0.113 -0.339 0.439 sum 19.576 -10.201 -2.230 22.187 Atomic orbital electron populations 1.69968 1.06688 1.27436 1.49114 1.25017 0.94664 1.00001 0.92598 0.86201 0.79070 0.81531 0.78563 1.20406 1.19332 1.23556 1.21576 0.90067 0.94800 1.53676 0.91022 1.19923 0.92927 0.87344 0.85848 0.92344 1.86353 1.77611 1.57747 1.16325 1.22733 0.84511 1.00729 1.00049 1.58670 1.08345 1.20956 1.39197 1.21790 0.95532 0.98755 0.90072 1.21332 0.93969 0.97298 1.02775 1.22178 0.98840 0.94231 0.99545 1.20437 0.94613 0.94434 0.95257 1.21840 1.00969 0.94536 0.97410 1.21535 0.96735 0.96350 1.01278 1.21493 0.96437 0.98372 0.99069 1.21480 1.00089 0.95256 0.98918 1.21837 0.96457 0.95707 1.00634 1.21327 0.94093 1.02379 0.96258 1.20778 0.94788 0.90043 0.99846 0.92576 0.79535 0.91515 0.95258 0.95244 0.90128 0.90315 0.92651 0.92618 0.92704 0.91519 0.92831 0.92581 0.91456 0.92447 0.92469 0.92741 0.91666 0.92394 0.92201 0.90910 0.91946 0.92488 0.95937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 3 Si 0.92 23.49 26.18 -169.99 -4.45 19.04 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 6 H -0.31 -7.82 7.11 56.52 0.40 -7.41 16 7 C -0.56 -15.68 9.34 -34.44 -0.32 -16.00 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.20 4.63 2.12 -27.88 -0.06 4.57 16 10 H 0.06 1.44 5.11 -51.93 -0.27 1.17 16 11 O -0.58 -13.29 10.90 -35.23 -0.38 -13.68 16 12 C 0.05 0.92 4.58 -3.83 -0.02 0.90 16 13 N -0.55 -9.24 3.89 -240.48 -0.94 -10.18 16 14 C 0.07 1.06 5.23 -4.56 -0.02 1.03 16 15 C -0.12 -1.61 5.27 -27.62 -0.15 -1.75 16 16 C -0.11 -1.26 4.98 -25.72 -0.13 -1.39 16 17 C -0.05 -0.51 0.44 -154.45 -0.07 -0.58 16 18 C -0.11 -1.19 3.55 -26.64 -0.09 -1.28 16 19 C -0.12 -1.19 5.40 -26.80 -0.14 -1.34 16 20 C -0.12 -1.00 5.95 -26.79 -0.16 -1.16 16 21 C -0.12 -1.04 5.55 -27.01 -0.15 -1.19 16 22 C -0.11 -1.02 4.17 -26.46 -0.11 -1.13 16 23 C -0.10 -1.24 3.68 -27.71 -0.10 -1.34 16 24 C 0.08 1.07 4.12 -7.17 -0.03 1.04 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.36 7.46 9.04 45.56 0.41 7.87 16 27 H 0.07 1.31 7.79 -51.93 -0.40 0.90 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.46 6.30 -51.98 -0.33 0.13 16 30 H 0.08 1.49 5.61 -51.88 -0.29 1.20 16 31 H 0.08 1.19 6.44 -51.98 -0.33 0.85 16 32 H 0.05 0.74 8.17 -51.74 -0.42 0.32 16 33 H 0.06 0.59 7.55 -51.80 -0.39 0.19 16 34 H 0.05 0.62 7.48 -51.82 -0.39 0.23 16 35 H 0.07 0.83 4.95 -52.19 -0.26 0.57 16 36 H 0.05 0.55 8.06 -51.60 -0.42 0.14 16 37 H 0.06 0.53 8.14 -51.91 -0.42 0.11 16 38 H 0.07 0.70 6.27 -52.00 -0.33 0.38 16 39 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.06 0.45 8.15 -51.91 -0.42 0.03 16 41 H 0.05 0.42 8.18 -51.67 -0.42 0.00 16 42 H 0.06 0.58 6.38 -52.00 -0.33 0.25 16 43 H 0.06 0.53 8.12 -51.87 -0.42 0.10 16 44 H 0.06 0.56 8.15 -51.87 -0.42 0.13 16 45 H 0.07 0.97 6.60 -51.69 -0.34 0.63 16 46 H 0.06 0.69 5.52 -51.65 -0.29 0.40 16 47 H 0.06 0.83 7.78 -51.47 -0.40 0.43 16 48 H 0.02 0.33 4.97 -52.19 -0.26 0.07 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -29.78 332.85 -9.21 -38.98 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.57 Total: 4.75 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.65 Total: -17.35 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.16 Total: -36.76 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.38 Total: -13.68 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.45 Total: 19.04 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.78 -9.21 -38.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351386463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.324 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds