Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 C 1.52992 * 109.47296 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47222 * 180.02562 * 4 3 2 6 6 N 1.40585 * 127.37753 * 275.56572 * 5 4 3 7 7 N 1.28905 * 106.81417 * 180.02562 * 6 5 4 8 8 N 1.28422 * 110.31583 * 359.72496 * 7 6 5 9 9 C 1.31468 * 110.51064 * 0.46194 * 8 7 6 10 10 N 1.38381 * 126.44162 * 179.81830 * 9 8 7 11 11 C 1.46897 * 110.99715 * 274.54472 * 10 9 8 12 12 C 1.50706 * 109.46817 * 199.66315 * 11 10 9 13 13 H 1.07993 * 120.00111 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99671 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00237 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47386 * 60.00224 * 16 14 12 18 18 H 1.48507 * 109.47193 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47280 * 300.00027 * 16 14 12 20 20 C 1.46901 * 110.99962 * 38.49704 * 10 9 8 21 21 C 1.53000 * 109.47016 * 71.70400 * 20 10 9 22 22 C 1.53004 * 109.46874 * 64.76208 * 21 20 10 23 23 C 1.53006 * 109.47009 * 184.75522 * 21 20 10 24 24 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47403 * 299.99943 * 1 2 3 26 26 H 1.08994 * 109.47739 * 59.99880 * 1 2 3 27 27 H 1.09001 * 109.47049 * 240.00428 * 2 1 3 28 28 H 1.08997 * 109.47025 * 119.99961 * 2 1 3 29 29 H 1.08998 * 109.46906 * 59.99753 * 3 2 1 30 30 H 1.09006 * 109.47227 * 300.00481 * 3 2 1 31 31 H 1.08998 * 109.47601 * 59.99865 * 4 3 2 32 32 H 1.09007 * 109.46826 * 299.99771 * 4 3 2 33 33 H 1.08996 * 109.47242 * 79.66359 * 11 10 9 34 34 H 1.09006 * 109.47285 * 319.65721 * 11 10 9 35 35 H 0.97004 * 119.99974 * 179.97438 * 15 14 12 36 36 H 1.08993 * 109.46958 * 191.70695 * 20 10 9 37 37 H 1.09004 * 109.46731 * 311.71037 * 20 10 9 38 38 H 1.08997 * 109.47550 * 304.75800 * 21 20 10 39 39 H 1.08997 * 109.47365 * 59.99479 * 22 21 20 40 40 H 1.08996 * 109.46822 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46628 * 299.99404 * 22 21 20 42 42 H 1.08998 * 109.47022 * 184.93709 * 23 21 20 43 43 H 1.08997 * 109.47115 * 304.93902 * 23 21 20 44 44 H 1.09006 * 109.46425 * 64.93883 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 7 4.2401 3.6652 -1.1115 7 7 4.6845 4.7880 -0.6604 8 7 4.7956 4.7423 0.6182 9 6 4.4314 3.5628 1.0703 10 7 4.4252 3.1555 2.3928 11 6 5.7450 2.6509 2.7944 12 6 5.6016 1.7926 4.0248 13 1 4.6275 1.6378 4.4646 14 6 6.7140 1.2050 4.5889 15 7 7.9003 1.3939 4.0536 16 14 6.5362 0.1416 6.1144 17 1 5.6374 -1.0027 5.8182 18 1 7.8705 -0.3686 6.5204 19 1 5.9597 0.9512 7.2177 20 6 3.9862 4.2436 3.2767 21 6 2.4858 4.4779 3.0906 22 6 1.7152 3.2391 3.5517 23 6 2.0516 5.6871 3.9215 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9336 0.9286 0.8892 33 1 6.4043 3.4911 3.0124 34 1 6.1689 2.0570 1.9845 35 1 8.6830 0.9808 4.4507 36 1 4.1859 3.9725 4.3133 37 1 4.5299 5.1551 3.0282 38 1 2.2751 4.6660 2.0379 39 1 1.9258 3.0511 4.6044 40 1 0.6462 3.4063 3.4195 41 1 2.0245 2.3777 2.9597 42 1 0.9694 5.8013 3.8588 43 1 2.3414 5.5364 4.9614 44 1 2.5347 6.5850 3.5361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354292746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = 95.260248 kcal Electronic energy + Delta-G solvation = -23489.012337 eV Core-core repulsion = 20285.487335 eV Total energy + Delta-G solvation = -3203.525002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45201 -37.87082 -36.38845 -34.51431 -33.53840 -32.75021 -30.66131 -29.24560 -27.37655 -26.84165 -25.40461 -24.66252 -22.71245 -22.21038 -21.20696 -20.75704 -19.60798 -16.96971 -16.66130 -15.96029 -15.65943 -15.60230 -15.01335 -14.65981 -14.06042 -13.90371 -13.81207 -13.45652 -12.87282 -12.80697 -12.53093 -12.31886 -12.12942 -11.94582 -11.87961 -11.68215 -11.48307 -11.29715 -11.20114 -11.08433 -10.93171 -10.79912 -10.61416 -10.52149 -10.44358 -10.27883 -10.23493 -9.93747 -9.79887 -9.36249 -8.65769 -8.03523 -6.23351 -4.28464 1.50622 2.21291 2.80559 3.21420 3.27261 3.28405 4.10428 4.35164 4.62107 4.73466 4.93147 4.95618 5.05753 5.12400 5.20482 5.27573 5.41035 5.43140 5.47077 5.50799 5.66545 5.81208 5.82846 5.89379 5.93843 5.96867 5.99570 6.01479 6.13105 6.16089 6.18869 6.21201 6.31498 6.41726 6.49867 6.62589 6.73108 6.85143 6.98857 7.47154 7.56042 7.82017 8.11962 8.77701 9.01014 9.37024 10.86954 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.006325 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.239715 B = 4425.758392 C = 4777.141994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.132 4.132 4 C 0.128 3.872 5 N -0.373 5.373 6 N -0.107 5.107 7 N -0.045 5.045 8 N -0.367 5.367 9 C 0.443 3.557 10 N -0.462 5.462 11 C 0.205 3.795 12 C -0.516 4.516 13 H 0.070 0.930 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.903 3.097 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.072 3.928 21 C -0.092 4.092 22 C -0.137 4.137 23 C -0.143 4.143 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.016 0.984 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 -1.029 -3.598 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.171 4.171 4 C 0.006 3.994 5 N -0.171 5.171 6 N -0.094 5.094 7 N -0.042 5.042 8 N -0.226 5.226 9 C 0.077 3.923 10 N -0.189 5.189 11 C 0.082 3.918 12 C -0.555 4.555 13 H 0.088 0.912 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.055 4.055 21 C -0.112 4.112 22 C -0.194 4.194 23 C -0.201 4.201 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.829 -0.555 -4.537 13.619 hybrid contribution 0.410 -0.876 1.179 1.525 sum -12.419 -1.431 -3.358 12.944 Atomic orbital electron populations 1.21734 0.95502 1.01629 1.01878 1.21429 0.96173 0.95506 1.02724 1.21980 0.93293 0.98313 1.03467 1.22020 0.95247 0.76444 1.05703 1.51472 1.46419 1.14162 1.05062 1.82404 1.22120 0.97424 1.07419 1.77797 1.09182 1.13599 1.03572 1.74898 1.24891 1.19442 1.03329 1.23581 0.91280 0.86438 0.91010 1.59421 1.32785 1.33288 0.93404 1.19944 0.79627 0.95265 0.96979 1.20951 0.94288 1.29979 1.10260 0.91166 1.24978 0.94972 0.96559 0.97668 1.69948 0.98595 1.43925 1.40560 0.86480 0.77285 0.80540 0.82674 1.20035 1.21244 1.20001 1.22254 0.93961 0.91602 0.97690 1.21121 0.95286 0.95577 0.99175 1.21749 0.97870 0.97961 1.01853 1.21767 1.00528 0.97548 1.00227 0.92610 0.92561 0.92893 0.91718 0.91019 0.90564 0.91374 0.88703 0.86593 0.96602 0.95337 0.92435 0.88117 0.92792 0.92715 0.92524 0.94109 0.91654 0.92994 0.92348 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.14 5.93 -26.73 -0.16 -1.30 16 3 C -0.13 -1.54 5.54 -26.74 -0.15 -1.69 16 4 C 0.13 1.79 6.52 -4.04 -0.03 1.76 16 5 N -0.37 -6.66 3.69 -61.86 -0.23 -6.89 16 6 N -0.11 -2.04 13.93 60.35 0.84 -1.20 16 7 N -0.05 -0.94 13.38 60.35 0.81 -0.13 16 8 N -0.37 -7.78 11.35 30.09 0.34 -7.44 16 9 C 0.44 8.77 5.73 -320.42 -1.84 6.94 16 10 N -0.46 -9.14 3.80 -176.23 -0.67 -9.81 16 11 C 0.20 4.91 4.69 -4.97 -0.02 4.89 16 12 C -0.52 -12.91 8.52 -34.44 -0.29 -13.21 16 13 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16 16 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 C 0.07 1.30 4.08 -3.82 -0.02 1.29 16 21 C -0.09 -1.40 2.92 -90.61 -0.26 -1.66 16 22 C -0.14 -1.91 9.08 37.16 0.34 -1.58 16 23 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.97 7.16 -51.93 -0.37 0.60 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.12 1.73 8.09 -51.93 -0.42 1.31 16 33 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 34 H 0.03 0.75 7.91 -51.93 -0.41 0.33 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.10 1.88 7.35 -51.93 -0.38 1.50 16 37 H 0.05 1.02 7.47 -51.93 -0.39 0.64 16 38 H 0.05 0.91 7.46 -51.93 -0.39 0.52 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.98 6.77 -51.93 -0.35 0.63 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -28.16 361.90 -7.30 -35.46 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.74 Total: -0.80 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.82 Total: -5.48 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 1.83 Total: -49.60 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.16 -7.30 -35.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354292746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.723 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds