Wall clock time and date at job start Tue Mar 31 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47233 * 2 1 4 4 C 1.52998 * 109.47161 * 120.00067 * 2 1 3 5 5 N 1.46898 * 109.47181 * 64.99733 * 4 2 1 6 6 C 1.46903 * 110.99839 * 190.00049 * 5 4 2 7 7 C 1.50701 * 109.47184 * 75.61338 * 6 5 4 8 8 H 1.07995 * 119.99740 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99838 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99792 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99962 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46978 * 90.00274 * 11 9 7 13 13 H 1.48499 * 109.46860 * 209.99766 * 11 9 7 14 14 H 1.48498 * 109.47178 * 329.99896 * 11 9 7 15 15 C 1.38378 * 110.99895 * 66.04916 * 5 4 2 16 16 N 1.31470 * 126.44255 * 38.40255 * 15 5 4 17 17 N 1.28427 * 110.51175 * 179.81728 * 16 15 5 18 18 N 1.28916 * 110.31364 * 0.46331 * 17 16 15 19 19 N 1.35316 * 126.43906 * 218.72155 * 15 5 4 20 20 C 1.46502 * 127.37796 * 359.97438 * 19 15 5 21 21 C 1.53002 * 109.47222 * 95.56289 * 20 19 15 22 22 C 1.53004 * 109.47145 * 64.99533 * 21 20 19 23 23 C 1.52999 * 109.47044 * 184.99639 * 21 20 19 24 24 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46626 * 300.00117 * 1 2 3 26 26 H 1.09001 * 109.47188 * 59.99793 * 1 2 3 27 27 H 1.08997 * 109.46707 * 240.00088 * 2 1 3 28 28 H 1.08994 * 109.47040 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46790 * 299.99999 * 3 2 1 30 30 H 1.08998 * 109.46955 * 59.99903 * 3 2 1 31 31 H 1.09000 * 109.47281 * 304.99702 * 4 2 1 32 32 H 1.09003 * 109.47327 * 185.00174 * 4 2 1 33 33 H 1.08996 * 109.47176 * 315.60324 * 6 5 4 34 34 H 1.09006 * 109.46805 * 195.60969 * 6 5 4 35 35 H 0.96996 * 120.00091 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.46863 * 215.56224 * 20 19 15 37 37 H 1.08999 * 109.47421 * 335.55892 * 20 19 15 38 38 H 1.09001 * 109.47025 * 305.00049 * 21 20 19 39 39 H 1.08993 * 109.47259 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47299 * 300.00633 * 22 21 20 41 41 H 1.09001 * 109.46738 * 60.00340 * 22 21 20 42 42 H 1.09003 * 109.46671 * 60.00111 * 23 21 20 43 43 H 1.08998 * 109.46693 * 179.97438 * 23 21 20 44 44 H 1.08990 * 109.47113 * 300.00160 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 -2.1367 1.1904 6 6 1.9125 -2.8079 2.4708 7 6 0.8609 -2.4055 3.4725 8 1 0.0774 -1.7195 3.1867 9 6 0.8993 -2.9133 4.7538 10 7 -0.0181 -2.5618 5.6282 11 14 2.2543 -4.1005 5.2478 12 1 3.4107 -3.3372 5.7820 13 1 1.7458 -5.0247 6.2931 14 1 2.6835 -4.8834 4.0611 15 6 2.2945 -2.7847 0.1506 16 7 3.5365 -2.5970 -0.2375 17 7 3.8186 -3.3625 -1.2293 18 7 2.7939 -4.0762 -1.5495 19 7 1.7614 -3.7264 -0.6619 20 6 0.3999 -4.2662 -0.6241 21 6 -0.4762 -3.5108 -1.6256 22 6 0.0261 -3.7782 -3.0459 23 6 -1.9241 -3.9885 -1.4983 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2617 2.1370 32 1 3.1264 -0.6443 1.2952 33 1 2.8960 -2.5170 2.8396 34 1 1.8832 -3.8881 2.3273 35 1 0.0091 -2.9187 6.5297 36 1 0.4212 -5.3242 -0.8856 37 1 -0.0101 -4.1481 0.3789 38 1 -0.4265 -2.4420 -1.4179 39 1 -0.5977 -3.2398 -3.7592 40 1 1.0577 -3.4380 -3.1365 41 1 -0.0235 -4.8471 -3.2535 42 1 -2.2819 -3.7979 -0.4864 43 1 -2.5483 -3.4500 -2.2114 44 1 -1.9737 -5.0573 -1.7059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354304933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:43 Heat of formation + Delta-G solvation = 104.563204 kcal Electronic energy + Delta-G solvation = -23861.048193 eV Core-core repulsion = 20657.926597 eV Total energy + Delta-G solvation = -3203.121596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.58716 -38.01725 -36.92167 -34.56895 -33.15186 -32.67601 -30.84280 -28.10362 -27.26607 -27.07101 -26.85700 -25.32932 -22.73491 -22.49741 -20.87909 -20.39092 -19.59025 -17.33516 -16.89154 -16.24115 -15.71889 -15.18371 -14.99692 -14.72446 -14.04336 -13.88561 -13.67033 -13.52031 -12.97522 -12.68353 -12.52180 -12.48363 -12.27313 -12.12810 -11.94419 -11.79653 -11.67610 -11.46711 -11.17639 -11.08902 -10.96281 -10.95661 -10.68932 -10.53891 -10.40726 -10.38703 -10.10077 -9.97457 -9.73645 -9.50036 -8.79052 -8.19001 -6.26436 -4.27448 1.39402 2.11540 2.68352 3.15835 3.23475 3.26695 4.03184 4.23624 4.54957 4.63206 4.86453 4.96302 5.02697 5.06613 5.18436 5.24265 5.38865 5.41552 5.54888 5.58138 5.72145 5.76028 5.76481 5.84920 5.92208 5.95026 5.96832 6.00957 6.06324 6.13626 6.17881 6.22962 6.26477 6.36416 6.41108 6.49714 6.56211 6.62029 6.72440 7.23671 7.26321 7.61696 8.33470 8.80510 8.90134 9.32392 10.85333 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.006778 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.944511 B = 4129.759985 C = 4469.571894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.142 4.142 4 C 0.073 3.927 5 N -0.452 5.452 6 C 0.173 3.827 7 C -0.517 4.517 8 H 0.089 0.911 9 C 0.079 3.921 10 N -0.889 5.889 11 Si 0.868 3.132 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.436 3.564 16 N -0.366 5.366 17 N -0.047 5.047 18 N -0.101 5.101 19 N -0.369 5.369 20 C 0.130 3.870 21 C -0.110 4.110 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.009 0.991 34 H 0.027 0.973 35 H 0.267 0.733 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 0.664 -12.503 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.054 4.054 5 N -0.179 5.179 6 C 0.049 3.951 7 C -0.555 4.555 8 H 0.107 0.893 9 C -0.125 4.125 10 N -0.526 5.526 11 Si 0.694 3.306 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.071 3.929 16 N -0.224 5.224 17 N -0.043 5.043 18 N -0.088 5.088 19 N -0.166 5.166 20 C 0.008 3.992 21 C -0.130 4.130 22 C -0.205 4.205 23 C -0.201 4.201 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.738 0.337 -13.179 13.298 hybrid contribution 0.552 -0.724 0.997 1.350 sum -1.186 -0.387 -12.182 12.246 Atomic orbital electron populations 1.21773 0.94562 1.02403 1.00833 1.21130 0.96667 0.95854 0.97582 1.21755 1.00944 0.95673 1.01641 1.22284 0.99379 0.84253 0.99468 1.59226 1.52515 1.03491 1.02621 1.20377 0.97552 0.93821 0.83363 1.20812 1.11575 1.29447 0.93697 0.89326 1.24781 0.95562 0.95938 0.96188 1.69851 1.33852 1.43902 1.05001 0.86985 0.82811 0.81805 0.78958 1.19787 1.20745 1.19445 1.23570 0.87388 0.88612 0.93359 1.74913 1.11769 1.23568 1.12193 1.77823 1.18138 1.01482 1.06847 1.82420 0.91895 1.21387 1.13094 1.51479 1.12813 1.30069 1.22281 1.22166 0.75326 0.98582 1.03173 1.21510 0.95115 1.01302 0.95030 1.21869 1.01486 1.01807 0.95343 1.21749 0.94224 1.01290 1.02824 0.91756 0.92263 0.94012 0.92624 0.92734 0.92974 0.92250 0.87671 0.92917 0.97299 0.95525 0.92257 0.88597 0.86465 0.89807 0.92598 0.92346 0.92414 0.91554 0.92007 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.08 37.16 0.34 -1.62 16 2 C -0.09 -1.40 2.85 -90.62 -0.26 -1.66 16 3 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 4 C 0.07 1.29 4.02 -3.83 -0.02 1.27 16 5 N -0.45 -8.66 3.86 -176.22 -0.68 -9.34 16 6 C 0.17 3.88 3.77 -4.97 -0.02 3.86 16 7 C -0.52 -13.10 9.12 -34.44 -0.31 -13.41 16 8 H 0.09 2.40 8.02 -52.49 -0.42 1.98 16 9 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.89 -25.07 13.96 55.43 0.77 -24.29 16 11 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 15 C 0.44 8.22 5.45 -320.41 -1.75 6.47 16 16 N -0.37 -7.32 11.45 30.10 0.34 -6.98 16 17 N -0.05 -0.92 13.38 60.35 0.81 -0.11 16 18 N -0.10 -1.81 12.69 60.35 0.77 -1.04 16 19 N -0.37 -6.22 3.36 -61.86 -0.21 -6.43 16 20 C 0.13 1.75 5.90 -4.04 -0.02 1.73 16 21 C -0.11 -1.27 3.13 -90.62 -0.28 -1.55 16 22 C -0.15 -1.65 9.02 37.16 0.34 -1.31 16 23 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 24 H 0.06 0.97 6.26 -51.93 -0.33 0.64 16 25 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.91 7.25 -51.93 -0.38 0.54 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.96 7.40 -51.93 -0.38 1.57 16 32 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 33 H 0.01 0.21 7.43 -51.93 -0.39 -0.17 16 34 H 0.03 0.62 6.97 -51.93 -0.36 0.26 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.12 1.69 8.09 -51.93 -0.42 1.27 16 38 H 0.08 1.08 6.65 -51.93 -0.35 0.74 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -28.10 353.46 -6.53 -34.62 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.58 Total: -0.64 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.40 Total: -6.70 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 1.80 Total: -48.19 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.10 -6.53 -34.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354304933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.185 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds