Wall clock time and date at job start Tue Mar 31 2020 05:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47557 * 2 1 4 4 H 1.08999 * 109.46856 * 304.99969 * 3 2 1 5 5 N 1.46904 * 109.46982 * 64.99482 * 3 2 1 6 6 C 1.52996 * 109.47210 * 184.99808 * 3 2 1 7 7 N 1.46503 * 109.46627 * 175.05075 * 6 3 2 8 8 C 1.36735 * 127.13857 * 85.07556 * 7 6 3 9 9 C 1.50706 * 126.34729 * 359.93582 * 8 7 6 10 10 N 1.30288 * 107.30575 * 179.97438 * 8 7 6 11 11 N 1.28521 * 110.05722 * 359.97438 * 10 8 7 12 12 C 1.31220 * 109.85777 * 359.74742 * 11 10 8 13 13 N 1.38580 * 126.47377 * 180.25702 * 12 11 10 14 14 C 1.46891 * 111.00089 * 257.08209 * 13 12 11 15 15 C 1.46904 * 111.00166 * 21.03872 * 13 12 11 16 16 H 1.09000 * 109.46433 * 300.00043 * 15 13 12 17 17 C 1.53006 * 109.47119 * 59.99494 * 15 13 12 18 18 C 1.50691 * 109.47365 * 179.97438 * 15 13 12 19 19 H 1.08007 * 120.00281 * 359.97438 * 18 15 13 20 20 C 1.37874 * 120.00144 * 179.97438 * 18 15 13 21 21 N 1.31513 * 119.99942 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00024 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47503 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47621 * 120.00247 * 22 20 18 25 25 H 1.48509 * 109.46961 * 239.99954 * 22 20 18 26 26 H 1.09003 * 109.46774 * 59.99969 * 1 2 3 27 27 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47081 * 300.00226 * 1 2 3 29 29 H 1.09010 * 109.47184 * 120.00067 * 2 1 3 30 30 H 1.08998 * 109.47567 * 239.99599 * 2 1 3 31 31 H 1.00907 * 110.99413 * 60.00365 * 5 3 2 32 32 H 1.00892 * 110.99649 * 183.95535 * 5 3 2 33 33 H 1.08996 * 109.47211 * 295.04977 * 6 3 2 34 34 H 1.08993 * 109.47123 * 55.05414 * 6 3 2 35 35 H 1.08999 * 109.47075 * 90.00210 * 9 8 7 36 36 H 1.08994 * 109.47282 * 210.00444 * 9 8 7 37 37 H 1.09005 * 109.46890 * 330.00024 * 9 8 7 38 38 H 1.09001 * 109.47348 * 51.42227 * 14 13 12 39 39 H 1.09004 * 109.47568 * 171.42459 * 14 13 12 40 40 H 1.09003 * 109.47277 * 291.42064 * 14 13 12 41 41 H 1.09003 * 109.46793 * 180.02562 * 17 15 13 42 42 H 1.09000 * 109.47221 * 300.00566 * 17 15 13 43 43 H 1.09003 * 109.46331 * 60.00300 * 17 15 13 44 44 H 0.97006 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6514 2.0993 1.2552 6 6 3.5649 1.4442 -0.1257 7 7 4.0434 2.8238 -0.2445 8 6 4.3139 3.6944 0.7745 9 6 4.1739 3.4151 2.2488 10 7 4.7144 4.8105 0.2347 11 7 4.7158 4.7050 -1.0462 12 6 4.3181 3.5042 -1.3950 13 7 4.1965 3.0197 -2.6876 14 6 2.7902 2.9972 -3.1112 15 6 5.0154 3.8028 -3.6226 16 1 4.6901 4.8430 -3.6071 17 6 6.4851 3.7219 -3.2045 18 6 4.8584 3.2475 -5.0146 19 1 4.2149 2.3975 -5.1875 20 6 5.5361 3.8244 -6.0675 21 7 6.3193 4.8598 -5.8571 22 14 5.3408 3.1365 -7.7932 23 1 4.4103 1.9795 -7.7626 24 1 4.7937 4.1888 -8.6868 25 1 6.6638 2.6937 -8.3022 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 2.0422 1.6179 2.0513 32 1 1.9204 3.0717 1.2528 33 1 4.0029 0.9827 0.7593 34 1 3.8570 0.8807 -1.0117 35 1 5.1111 3.0125 2.6330 36 1 3.9340 4.3403 2.7728 37 1 3.3751 2.6904 2.4070 38 1 2.3414 3.9745 -2.9335 39 1 2.7344 2.7595 -4.1735 40 1 2.2510 2.2407 -2.5409 41 1 7.0926 4.3033 -3.8980 42 1 6.5990 4.1233 -2.1975 43 1 6.8103 2.6816 -3.2199 44 1 6.7964 5.2654 -6.5979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577134078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:54 Heat of formation + Delta-G solvation = 91.610561 kcal Electronic energy + Delta-G solvation = -23654.078436 eV Core-core repulsion = 20450.395172 eV Total energy + Delta-G solvation = -3203.683264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.59199 -37.76001 -37.13322 -33.88564 -33.01068 -31.75284 -31.03823 -29.27962 -28.35058 -27.14498 -25.31699 -24.37515 -24.01343 -21.88870 -21.10051 -20.21143 -19.41334 -17.07848 -16.55257 -16.20015 -16.00359 -15.34808 -14.93118 -14.76657 -14.19283 -14.11297 -13.86391 -13.46001 -13.24917 -13.02378 -12.86423 -12.69527 -12.37565 -12.02509 -11.89916 -11.82867 -11.23977 -11.13735 -11.03881 -10.97660 -10.90186 -10.65541 -10.32805 -10.21602 -10.11263 -10.09272 -9.83139 -9.22760 -8.85247 -8.63048 -8.47480 -7.50048 -6.06645 -4.14267 2.15356 2.59278 3.26248 3.34087 3.35288 3.36793 4.16768 4.27668 4.41559 4.53854 4.61541 4.66902 4.77959 4.94433 5.03896 5.25333 5.29385 5.31972 5.35064 5.48548 5.60213 5.62260 5.71940 5.80951 5.89049 5.99312 6.06413 6.14204 6.17917 6.36957 6.51067 6.79796 6.87946 6.93850 7.10098 7.10594 7.19727 7.42997 7.67250 7.71763 7.94292 8.22243 8.42976 8.87917 9.30478 9.50474 10.99838 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.005372 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.316854 B = 5210.994987 C = 6354.859517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.073 3.927 4 H 0.092 0.908 5 N -0.838 5.838 6 C 0.075 3.925 7 N -0.481 5.481 8 C 0.138 3.862 9 C -0.066 4.066 10 N -0.284 5.284 11 N -0.315 5.315 12 C 0.386 3.614 13 N -0.462 5.462 14 C 0.036 3.964 15 C 0.228 3.772 16 H 0.025 0.975 17 C -0.133 4.133 18 C -0.516 4.516 19 H 0.066 0.934 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.337 0.663 32 H 0.346 0.654 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.101 0.899 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -9.777 14.184 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.039 4.039 4 H 0.110 0.890 5 N -0.371 5.371 6 C -0.051 4.051 7 N -0.177 5.177 8 C -0.129 4.129 9 C -0.126 4.126 10 N -0.125 5.125 11 N -0.158 5.158 12 C 0.030 3.970 13 N -0.187 5.187 14 C -0.111 4.111 15 C 0.124 3.876 16 H 0.043 0.957 17 C -0.191 4.191 18 C -0.555 4.555 19 H 0.084 0.916 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.727 3.273 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.693 -8.874 13.708 18.499 hybrid contribution 0.511 -0.881 -0.790 1.289 sum -8.182 -9.755 12.918 18.138 Atomic orbital electron populations 1.21638 0.94648 1.01009 1.02710 1.21471 0.97305 0.93994 1.02237 1.22027 0.90921 0.96850 0.94140 0.89013 1.59003 1.67416 1.07266 1.03452 1.22737 0.96872 0.80324 1.05120 1.46255 1.52221 1.12995 1.06260 1.24525 1.06762 0.88762 0.92897 1.20324 1.02891 1.03640 0.85749 1.73956 1.16985 1.19670 1.01844 1.74818 1.22905 1.13730 1.04375 1.23093 0.98611 0.87220 0.88042 1.59137 1.10408 1.53096 0.96085 1.22436 0.85909 0.99190 1.03543 1.19346 0.88939 0.91530 0.87760 0.95717 1.21817 0.98883 0.99504 0.98915 1.21085 1.28285 1.15541 0.90589 0.91624 1.24907 0.94954 0.94862 0.99165 1.69933 1.28737 1.21799 1.31623 0.86421 0.77954 0.78865 0.84018 1.19725 1.20972 1.20955 0.92913 0.93210 0.91544 0.91886 0.91095 0.84768 0.83818 0.89516 0.87502 0.90260 0.88885 0.91052 0.95538 0.88089 0.93308 0.89203 0.96166 0.95575 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.80 37.16 0.36 -0.82 16 2 C -0.11 -0.91 5.58 -26.73 -0.15 -1.06 16 3 C 0.07 0.73 2.90 -67.71 -0.20 0.54 16 4 H 0.09 1.14 6.09 -51.93 -0.32 0.82 16 5 N -0.84 -7.57 7.83 -4.67 -0.04 -7.61 16 6 C 0.08 0.87 5.35 -4.04 -0.02 0.85 16 7 N -0.48 -7.63 2.69 -114.09 -0.31 -7.94 16 8 C 0.14 2.15 6.98 -154.02 -1.08 1.07 16 9 C -0.07 -0.64 9.59 36.01 0.35 -0.29 16 10 N -0.28 -5.79 12.18 32.99 0.40 -5.39 16 11 N -0.31 -7.29 10.04 30.31 0.30 -6.99 16 12 C 0.39 7.99 6.00 -318.87 -1.91 6.07 16 13 N -0.46 -9.98 4.63 -176.08 -0.81 -10.80 16 14 C 0.04 0.69 9.44 60.06 0.57 1.25 16 15 C 0.23 5.90 1.73 -68.86 -0.12 5.78 16 16 H 0.03 0.73 7.91 -51.93 -0.41 0.32 16 17 C -0.13 -3.49 8.80 37.16 0.33 -3.16 16 18 C -0.52 -13.76 7.76 -34.45 -0.27 -14.02 16 19 H 0.07 1.69 6.48 -52.48 -0.34 1.35 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.24 11.32 55.43 0.63 -24.62 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.58 7.75 -51.93 -0.40 0.18 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.34 2.34 7.40 -39.29 -0.29 2.05 16 32 H 0.35 3.65 6.39 -39.30 -0.25 3.40 16 33 H 0.09 0.79 8.06 -51.93 -0.42 0.38 16 34 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.50 4.46 -51.93 -0.23 0.27 16 38 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 39 H 0.10 1.97 5.88 -51.93 -0.31 1.67 16 40 H 0.05 0.75 5.81 -51.93 -0.30 0.45 16 41 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 42 H 0.02 0.51 6.25 -51.93 -0.32 0.19 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -31.67 338.81 -8.82 -40.49 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.84 Total: 4.11 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.23 Total: -2.16 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.18 Total: -63.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.67 -8.82 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577134078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.098 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds