Wall clock time and date at job start Tue Mar 31 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 H 1.09006 * 109.47174 * 55.00397 * 3 2 1 5 5 N 1.46896 * 109.47474 * 294.99988 * 3 2 1 6 6 C 1.53006 * 109.46963 * 175.00303 * 3 2 1 7 7 N 1.46500 * 109.46847 * 184.40975 * 6 3 2 8 8 C 1.36731 * 127.13753 * 274.31193 * 7 6 3 9 9 C 1.50702 * 126.34644 * 359.95528 * 8 7 6 10 10 N 1.30292 * 107.30830 * 179.97438 * 8 7 6 11 11 N 1.28530 * 110.05154 * 0.02562 * 10 8 7 12 12 C 1.31222 * 109.86027 * 359.74288 * 11 10 8 13 13 N 1.38577 * 126.47304 * 180.25969 * 12 11 10 14 14 C 1.46900 * 110.99669 * 251.48833 * 13 12 11 15 15 C 1.46898 * 111.00285 * 15.44017 * 13 12 11 16 16 H 1.09007 * 109.46882 * 55.00387 * 15 13 12 17 17 C 1.52996 * 109.47635 * 295.00479 * 15 13 12 18 18 C 1.50697 * 109.47474 * 175.00041 * 15 13 12 19 19 H 1.08005 * 119.99702 * 0.02562 * 18 15 13 20 20 C 1.37874 * 120.00370 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99690 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00163 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46935 * 89.99785 * 22 20 18 24 24 H 1.48493 * 109.47349 * 209.99623 * 22 20 18 25 25 H 1.48498 * 109.47246 * 330.00111 * 22 20 18 26 26 H 1.09005 * 109.46880 * 299.99430 * 1 2 3 27 27 H 1.09001 * 109.47274 * 59.99887 * 1 2 3 28 28 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46880 * 240.00570 * 2 1 3 30 30 H 1.08992 * 109.47298 * 120.00359 * 2 1 3 31 31 H 1.00897 * 111.00403 * 295.46532 * 5 3 2 32 32 H 1.00902 * 110.99637 * 59.41025 * 5 3 2 33 33 H 1.08997 * 109.46640 * 304.40819 * 6 3 2 34 34 H 1.09000 * 109.47181 * 64.40518 * 6 3 2 35 35 H 1.08999 * 109.47416 * 89.99486 * 9 8 7 36 36 H 1.09006 * 109.46993 * 209.99305 * 9 8 7 37 37 H 1.08997 * 109.47229 * 329.99201 * 9 8 7 38 38 H 1.09005 * 109.46988 * 62.25204 * 14 13 12 39 39 H 1.09006 * 109.47047 * 182.24877 * 14 13 12 40 40 H 1.08994 * 109.47565 * 302.25033 * 14 13 12 41 41 H 1.09000 * 109.47150 * 59.99641 * 17 15 13 42 42 H 1.08996 * 109.47318 * 179.97438 * 17 15 13 43 43 H 1.09002 * 109.46883 * 300.00386 * 17 15 13 44 44 H 0.97005 * 119.99340 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6514 2.0994 -1.2552 6 6 3.5649 1.4444 0.1257 7 7 4.0444 2.8247 0.2316 8 6 4.3265 3.6817 -0.7958 9 6 4.2030 3.3828 -2.2677 10 7 4.7223 4.8045 -0.2664 11 7 4.7100 4.7156 1.0158 12 6 4.2971 3.5233 1.3761 13 7 4.1485 3.0604 2.6738 14 6 5.1839 2.0711 3.0015 15 6 4.1598 4.1720 3.6339 16 1 3.3960 4.8989 3.3572 17 6 5.5337 4.8452 3.6188 18 6 3.8739 3.6448 5.0164 19 1 3.7015 2.5892 5.1668 20 6 3.8325 4.5098 6.0892 21 7 4.0429 5.7950 5.9062 22 14 3.4774 3.8562 7.8028 23 1 4.7539 3.4885 8.4666 24 1 2.7891 4.9036 8.5993 25 1 2.6071 2.6570 7.7047 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.1013 1.6632 -2.0459 32 1 0.6485 2.1024 -1.3662 33 1 3.8566 0.8890 1.0170 34 1 4.0026 0.9742 -0.7549 35 1 3.2020 3.6463 -2.6093 36 1 4.9404 3.9655 -2.8199 37 1 4.3773 2.3205 -2.4387 38 1 6.1660 2.5403 2.9434 39 1 5.0202 1.6948 4.0114 40 1 5.1337 1.2443 2.2931 41 1 5.7404 5.2266 2.6189 42 1 5.5418 5.6703 4.3309 43 1 6.2974 4.1183 3.8955 44 1 4.0141 6.4035 6.6611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577134079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:56 Heat of formation + Delta-G solvation = 91.505227 kcal Electronic energy + Delta-G solvation = -23599.782363 eV Core-core repulsion = 20396.094531 eV Total energy + Delta-G solvation = -3203.687832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30946 -37.67899 -37.20706 -33.95217 -32.81508 -31.28550 -30.89902 -28.73233 -28.26993 -27.10661 -25.16813 -24.89133 -23.94212 -21.55394 -20.98083 -20.12065 -19.29142 -16.82699 -16.38072 -15.95751 -15.75020 -15.39023 -14.93959 -14.59971 -14.27220 -14.05881 -13.71965 -13.33728 -13.26863 -12.87331 -12.74208 -12.40080 -12.20878 -12.01983 -11.90434 -11.49303 -11.41999 -11.25079 -11.15795 -11.03709 -10.89264 -10.68330 -10.26464 -10.09669 -10.01228 -9.62900 -9.52792 -8.84069 -8.74688 -8.60753 -8.35035 -7.29082 -5.98400 -4.05613 2.42392 2.83688 3.30765 3.37538 3.39953 3.59127 4.28145 4.37105 4.48505 4.63711 4.76327 4.80625 4.84011 4.90927 5.18308 5.25291 5.30789 5.34223 5.39745 5.55172 5.69558 5.71382 5.73838 5.88964 5.93628 5.98983 6.07635 6.18885 6.37260 6.48894 6.59556 6.92249 6.94022 7.18867 7.23317 7.25361 7.42508 7.63214 7.75770 7.82952 8.05355 8.38122 8.56895 8.96418 9.54965 9.59320 11.07729 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005554 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.307073 B = 5040.637662 C = 6138.968954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.077 3.923 4 H 0.097 0.903 5 N -0.837 5.837 6 C 0.122 3.878 7 N -0.473 5.473 8 C 0.173 3.827 9 C -0.049 4.049 10 N -0.303 5.303 11 N -0.314 5.314 12 C 0.374 3.626 13 N -0.457 5.457 14 C 0.037 3.963 15 C 0.231 3.769 16 H 0.047 0.953 17 C -0.179 4.179 18 C -0.512 4.512 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.884 5.884 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.334 0.666 32 H 0.343 0.657 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 -13.545 -14.883 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C -0.036 4.036 4 H 0.115 0.885 5 N -0.367 5.367 6 C -0.003 4.003 7 N -0.169 5.169 8 C -0.095 4.095 9 C -0.109 4.109 10 N -0.142 5.142 11 N -0.157 5.157 12 C 0.018 3.982 13 N -0.181 5.181 14 C -0.111 4.111 15 C 0.126 3.874 16 H 0.065 0.935 17 C -0.239 4.239 18 C -0.551 4.551 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.038 0.962 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.988 -11.508 -14.296 18.594 hybrid contribution -0.508 -2.322 0.736 2.488 sum -3.496 -13.830 -13.561 19.682 Atomic orbital electron populations 1.21757 0.95227 1.01865 1.02116 1.22269 0.96927 0.97669 1.02671 1.21883 0.94142 0.93002 0.94579 0.88539 1.58961 1.13798 1.60427 1.03524 1.21820 0.94164 0.80572 1.03726 1.45983 1.51904 1.12902 1.06089 1.24370 1.04465 0.88024 0.92658 1.20020 1.03814 1.01173 0.85847 1.73953 1.18964 1.19135 1.02174 1.74813 1.20783 1.16151 1.03956 1.23160 0.98397 0.89024 0.87606 1.59401 1.44459 1.18222 0.96053 1.22350 0.92974 0.93452 1.02298 1.19311 0.94985 0.85388 0.87685 0.93514 1.22557 0.97466 1.01936 1.01920 1.21034 1.48892 0.94400 0.90763 0.91960 1.24894 0.95237 0.94803 0.99009 1.69935 1.48955 1.02262 1.31046 0.86507 0.78294 0.78536 0.84080 1.20743 1.21221 1.19936 0.92036 0.92945 0.92502 0.92050 0.90882 0.85295 0.84226 0.88149 0.89970 0.89460 0.90135 0.91967 0.94611 0.88971 0.94026 0.92743 0.89515 0.96196 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.68 37.16 0.36 -0.80 16 2 C -0.16 -1.23 5.61 -26.73 -0.15 -1.38 16 3 C 0.08 0.81 3.07 -67.71 -0.21 0.60 16 4 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 5 N -0.84 -7.73 7.55 -4.66 -0.04 -7.76 16 6 C 0.12 1.43 5.47 -4.04 -0.02 1.41 16 7 N -0.47 -7.88 2.77 -114.08 -0.32 -8.19 16 8 C 0.17 2.91 7.71 -154.02 -1.19 1.73 16 9 C -0.05 -0.54 8.96 36.01 0.32 -0.22 16 10 N -0.30 -6.52 12.18 32.99 0.40 -6.12 16 11 N -0.31 -7.51 8.94 30.31 0.27 -7.24 16 12 C 0.37 8.00 6.67 -318.87 -2.13 5.87 16 13 N -0.46 -10.08 4.77 -176.08 -0.84 -10.91 16 14 C 0.04 0.70 8.64 60.06 0.52 1.22 16 15 C 0.23 6.07 2.09 -68.87 -0.14 5.92 16 16 H 0.05 1.42 8.11 -51.93 -0.42 0.99 16 17 C -0.18 -4.72 8.27 37.16 0.31 -4.41 16 18 C -0.51 -13.91 7.91 -34.44 -0.27 -14.18 16 19 H 0.06 1.64 6.75 -52.48 -0.35 1.28 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -25.71 11.32 55.43 0.63 -25.08 16 22 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.35 6.76 -51.93 -0.35 0.00 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.33 2.34 8.34 -39.29 -0.33 2.02 16 32 H 0.34 2.82 7.37 -39.29 -0.29 2.53 16 33 H 0.10 1.20 5.99 -51.93 -0.31 0.89 16 34 H 0.08 0.73 7.39 -51.93 -0.38 0.35 16 35 H 0.09 0.89 7.54 -51.93 -0.39 0.50 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.51 7.36 -51.93 -0.38 0.13 16 38 H 0.04 0.71 6.38 -51.93 -0.33 0.38 16 39 H 0.09 1.78 6.48 -51.93 -0.34 1.44 16 40 H 0.04 0.64 6.07 -51.93 -0.32 0.32 16 41 H 0.05 1.43 5.37 -51.93 -0.28 1.16 16 42 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 43 H 0.02 0.49 6.42 -51.93 -0.33 0.15 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -32.96 337.31 -9.32 -42.28 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.79 Total: 4.41 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.70 Total: -2.60 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.11 Total: -65.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.96 -9.32 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577134079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.783 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds