Wall clock time and date at job start Tue Mar 31 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 H 1.09006 * 109.47174 * 55.00397 * 3 2 1 5 5 N 1.46896 * 109.47474 * 294.99988 * 3 2 1 6 6 C 1.53006 * 109.46963 * 175.00303 * 3 2 1 7 7 N 1.46500 * 109.46847 * 184.40975 * 6 3 2 8 8 C 1.36731 * 127.13753 * 274.31193 * 7 6 3 9 9 C 1.50702 * 126.34644 * 359.95528 * 8 7 6 10 10 N 1.30292 * 107.30830 * 179.97438 * 8 7 6 11 11 N 1.28530 * 110.05154 * 0.02562 * 10 8 7 12 12 C 1.31222 * 109.86027 * 359.74288 * 11 10 8 13 13 N 1.38577 * 126.47304 * 180.25969 * 12 11 10 14 14 C 1.46900 * 110.99669 * 251.48833 * 13 12 11 15 15 C 1.46898 * 111.00285 * 15.44017 * 13 12 11 16 16 H 1.09007 * 109.46882 * 55.00387 * 15 13 12 17 17 C 1.52996 * 109.47635 * 295.00479 * 15 13 12 18 18 C 1.50697 * 109.47474 * 175.00041 * 15 13 12 19 19 H 1.08005 * 119.99702 * 0.02562 * 18 15 13 20 20 C 1.37874 * 120.00370 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99690 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00163 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46935 * 89.99785 * 22 20 18 24 24 H 1.48493 * 109.47349 * 209.99623 * 22 20 18 25 25 H 1.48498 * 109.47246 * 330.00111 * 22 20 18 26 26 H 1.09005 * 109.46880 * 299.99430 * 1 2 3 27 27 H 1.09001 * 109.47274 * 59.99887 * 1 2 3 28 28 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46880 * 240.00570 * 2 1 3 30 30 H 1.08992 * 109.47298 * 120.00359 * 2 1 3 31 31 H 1.00897 * 111.00403 * 295.46532 * 5 3 2 32 32 H 1.00902 * 110.99637 * 59.41025 * 5 3 2 33 33 H 1.08997 * 109.46640 * 304.40819 * 6 3 2 34 34 H 1.09000 * 109.47181 * 64.40518 * 6 3 2 35 35 H 1.08999 * 109.47416 * 89.99486 * 9 8 7 36 36 H 1.09006 * 109.46993 * 209.99305 * 9 8 7 37 37 H 1.08997 * 109.47229 * 329.99201 * 9 8 7 38 38 H 1.09005 * 109.46988 * 62.25204 * 14 13 12 39 39 H 1.09006 * 109.47047 * 182.24877 * 14 13 12 40 40 H 1.08994 * 109.47565 * 302.25033 * 14 13 12 41 41 H 1.09000 * 109.47150 * 59.99641 * 17 15 13 42 42 H 1.08996 * 109.47318 * 179.97438 * 17 15 13 43 43 H 1.09002 * 109.46883 * 300.00386 * 17 15 13 44 44 H 0.97005 * 119.99340 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6514 2.0994 -1.2552 6 6 3.5649 1.4444 0.1257 7 7 4.0444 2.8247 0.2316 8 6 4.3265 3.6817 -0.7958 9 6 4.2030 3.3828 -2.2677 10 7 4.7223 4.8045 -0.2664 11 7 4.7100 4.7156 1.0158 12 6 4.2971 3.5233 1.3761 13 7 4.1485 3.0604 2.6738 14 6 5.1839 2.0711 3.0015 15 6 4.1598 4.1720 3.6339 16 1 3.3960 4.8989 3.3572 17 6 5.5337 4.8452 3.6188 18 6 3.8739 3.6448 5.0164 19 1 3.7015 2.5892 5.1668 20 6 3.8325 4.5098 6.0892 21 7 4.0429 5.7950 5.9062 22 14 3.4774 3.8562 7.8028 23 1 4.7539 3.4885 8.4666 24 1 2.7891 4.9036 8.5993 25 1 2.6071 2.6570 7.7047 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.1013 1.6632 -2.0459 32 1 0.6485 2.1024 -1.3662 33 1 3.8566 0.8890 1.0170 34 1 4.0026 0.9742 -0.7549 35 1 3.2020 3.6463 -2.6093 36 1 4.9404 3.9655 -2.8199 37 1 4.3773 2.3205 -2.4387 38 1 6.1660 2.5403 2.9434 39 1 5.0202 1.6948 4.0114 40 1 5.1337 1.2443 2.2931 41 1 5.7404 5.2266 2.6189 42 1 5.5418 5.6703 4.3309 43 1 6.2974 4.1183 3.8955 44 1 4.0141 6.4035 6.6611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577134079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:55 Heat of formation + Delta-G solvation = 69.533673 kcal Electronic energy + Delta-G solvation = -23600.735121 eV Core-core repulsion = 20396.094531 eV Total energy + Delta-G solvation = -3204.640590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.78680 -39.00936 -38.55235 -35.24129 -34.74778 -32.59127 -31.62290 -30.64096 -29.43321 -28.39797 -27.20702 -26.54313 -24.86999 -23.30466 -21.85667 -21.41862 -20.95878 -18.37580 -17.79376 -17.40892 -17.19155 -16.80049 -16.42876 -15.80041 -15.58871 -15.06764 -15.00470 -14.75139 -14.54450 -14.26757 -13.76013 -13.59260 -13.46818 -13.22493 -13.04525 -12.99889 -12.81813 -12.68642 -12.63465 -12.41784 -12.22461 -12.17146 -11.99021 -11.90547 -11.78415 -11.31909 -10.85608 -10.77296 -10.47459 -10.25872 -9.55679 -8.98523 -8.10677 -6.26270 1.01351 1.43315 1.45554 1.51264 1.57288 2.05842 2.42723 3.10623 3.18787 3.50566 3.64375 3.71665 3.88930 4.05115 4.11146 4.18762 4.27324 4.36630 4.55200 4.57903 4.64158 4.71656 4.73517 4.84476 4.89622 4.98370 5.02107 5.10214 5.12679 5.16738 5.20186 5.29706 5.34639 5.36193 5.52342 5.66781 5.70368 5.93712 6.17010 6.24686 6.25479 6.66365 6.70157 6.83918 7.42658 8.02954 8.95974 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005554 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.307073 B = 5040.637662 C = 6138.968954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.086 3.914 4 H 0.049 0.951 5 N -0.846 5.846 6 C 0.111 3.889 7 N -0.462 5.462 8 C 0.197 3.803 9 C -0.048 4.048 10 N -0.355 5.355 11 N -0.366 5.366 12 C 0.353 3.647 13 N -0.456 5.456 14 C 0.040 3.960 15 C 0.244 3.756 16 H -0.008 1.008 17 C -0.161 4.161 18 C -0.522 4.522 19 H 0.072 0.928 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.971 3.029 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.262 1.262 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.352 0.648 32 H 0.350 0.650 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.021 0.979 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.026 0.974 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -16.995 -16.626 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.184 4.184 3 C -0.027 4.027 4 H 0.067 0.933 5 N -0.379 5.379 6 C -0.011 4.011 7 N -0.157 5.157 8 C -0.072 4.072 9 C -0.107 4.107 10 N -0.194 5.194 11 N -0.209 5.209 12 C -0.005 4.005 13 N -0.180 5.180 14 C -0.107 4.107 15 C 0.138 3.862 16 H 0.010 0.990 17 C -0.221 4.221 18 C -0.560 4.560 19 H 0.090 0.910 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.186 1.186 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.321 -15.004 -16.079 22.242 hybrid contribution -0.444 -1.268 1.102 1.737 sum -3.764 -16.273 -14.977 22.434 Atomic orbital electron populations 1.21759 0.95195 1.02429 1.01611 1.22177 0.96851 0.95603 1.03815 1.21622 0.93024 0.94295 0.93720 0.93273 1.58879 1.14625 1.60830 1.03590 1.22294 0.95104 0.77948 1.05766 1.46165 1.50866 1.14372 1.04247 1.25492 1.00421 0.86475 0.94790 1.20338 1.04938 1.04016 0.81362 1.73842 1.22176 1.22013 1.01415 1.74618 1.22568 1.18067 1.05675 1.23044 0.99663 0.89517 0.88313 1.59256 1.45796 1.16988 0.95966 1.22411 0.91282 0.93647 1.03382 1.18854 0.92910 0.85763 0.88688 0.98954 1.22339 0.98038 1.00981 1.00707 1.21326 1.48659 0.94852 0.91205 0.91020 1.25825 0.94868 0.94890 1.03354 1.70109 1.49931 1.03717 1.32224 0.85369 0.78444 0.78039 0.78626 1.19799 1.21347 1.18647 0.94215 0.91876 0.91355 0.89258 0.91267 0.83304 0.83525 0.88177 0.85596 0.88060 0.89238 0.87915 0.96013 0.89306 0.89867 0.93190 0.92435 0.95477 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.68 71.98 0.70 -1.30 16 2 C -0.14 -1.83 5.61 30.60 0.17 -1.66 16 3 C 0.09 1.64 3.07 44.92 0.14 1.78 16 4 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 5 N -0.85 -13.09 7.55 -168.67 -1.27 -14.36 16 6 C 0.11 2.27 5.47 86.38 0.47 2.74 16 7 N -0.46 -14.76 2.77 -514.85 -1.42 -16.18 16 8 C 0.20 6.35 7.71 137.64 1.06 7.41 16 9 C -0.05 -0.86 8.96 71.24 0.64 -0.22 16 10 N -0.36 -15.59 12.18 -49.54 -0.60 -16.19 16 11 N -0.37 -18.31 8.94 -58.00 -0.52 -18.83 16 12 C 0.35 15.39 6.67 260.11 1.74 17.13 16 13 N -0.46 -20.60 4.77 -711.00 -3.39 -23.99 16 14 C 0.04 1.49 8.64 127.69 1.10 2.59 16 15 C 0.24 13.47 2.09 44.17 0.09 13.57 16 16 H -0.01 -0.49 8.11 -2.38 -0.02 -0.51 16 17 C -0.16 -8.94 8.27 71.98 0.60 -8.35 16 18 C -0.52 -29.02 7.91 25.60 0.20 -28.82 16 19 H 0.07 3.77 6.75 -2.91 -0.02 3.75 16 20 C 0.01 0.54 5.30 84.65 0.45 0.99 16 21 N -0.92 -55.70 11.32 21.45 0.24 -55.46 16 22 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.68 6.76 -2.39 -0.02 0.66 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.35 3.23 8.34 -89.70 -0.75 2.48 16 32 H 0.35 4.86 7.37 -89.69 -0.66 4.20 16 33 H 0.10 2.08 5.99 -2.39 -0.01 2.07 16 34 H 0.13 1.52 7.39 -2.39 -0.02 1.50 16 35 H 0.10 1.65 7.54 -2.39 -0.02 1.64 16 36 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.10 1.06 7.36 -2.39 -0.02 1.04 16 38 H 0.02 0.86 6.38 -2.38 -0.02 0.84 16 39 H 0.09 3.36 6.48 -2.38 -0.02 3.35 16 40 H 0.08 2.38 6.07 -2.39 -0.01 2.36 16 41 H 0.05 2.80 5.37 -2.39 -0.01 2.79 16 42 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 43 H 0.03 1.39 6.42 -2.39 -0.02 1.38 16 44 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -78.09 337.31 2.03 -76.06 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.39 Total: 17.27 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 7.36 Total: 5.87 kcal Atomic # 7 Polarization: -138.04 SS G_CDS: -6.96 Total: -145.01 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -78.09 2.03 -76.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577134079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.590 kcal (2) G-P(sol) polarization free energy of solvation -78.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds