Wall clock time and date at job start Tue Mar 31 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 H 1.09001 * 109.47507 * 305.00110 * 3 2 1 5 5 N 1.46903 * 109.47393 * 64.99984 * 3 2 1 6 6 C 1.53001 * 109.47258 * 185.00288 * 3 2 1 7 7 N 1.46501 * 109.47396 * 174.55453 * 6 3 2 8 8 C 1.36734 * 127.13826 * 84.27407 * 7 6 3 9 9 C 1.50708 * 126.34458 * 0.27110 * 8 7 6 10 10 N 1.30293 * 107.30695 * 180.02562 * 8 7 6 11 11 N 1.28524 * 110.05109 * 0.02562 * 10 8 7 12 12 C 1.31213 * 109.86207 * 359.97438 * 11 10 8 13 13 N 1.38583 * 126.47145 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99893 * 237.13715 * 13 12 11 15 15 C 1.46895 * 111.00544 * 1.09044 * 13 12 11 16 16 H 1.09001 * 109.46831 * 54.99982 * 15 13 12 17 17 C 1.53008 * 109.46958 * 295.00422 * 15 13 12 18 18 C 1.50696 * 109.47500 * 175.00470 * 15 13 12 19 19 H 1.07996 * 120.00225 * 359.97438 * 18 15 13 20 20 C 1.37884 * 119.99986 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99871 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00062 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47064 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47093 * 119.99868 * 22 20 18 25 25 H 1.48492 * 109.47348 * 239.99881 * 22 20 18 26 26 H 1.08997 * 109.46787 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46881 * 299.99464 * 1 2 3 28 28 H 1.09003 * 109.47261 * 59.99838 * 1 2 3 29 29 H 1.08999 * 109.46881 * 240.00536 * 2 1 3 30 30 H 1.08997 * 109.47550 * 119.99839 * 2 1 3 31 31 H 1.00900 * 110.99236 * 59.99595 * 5 3 2 32 32 H 1.00893 * 110.99968 * 183.95078 * 5 3 2 33 33 H 1.09003 * 109.46864 * 54.54964 * 6 3 2 34 34 H 1.08998 * 109.46701 * 294.55512 * 6 3 2 35 35 H 1.09000 * 109.46474 * 269.70559 * 9 8 7 36 36 H 1.08993 * 109.47074 * 29.70394 * 9 8 7 37 37 H 1.09000 * 109.47002 * 149.70948 * 9 8 7 38 38 H 1.08995 * 109.46875 * 52.20286 * 14 13 12 39 39 H 1.08992 * 109.47096 * 172.20642 * 14 13 12 40 40 H 1.09006 * 109.46800 * 292.20921 * 14 13 12 41 41 H 1.08996 * 109.47138 * 299.99912 * 17 15 13 42 42 H 1.09001 * 109.46893 * 59.99762 * 17 15 13 43 43 H 1.08994 * 109.47084 * 179.97438 * 17 15 13 44 44 H 0.96996 * 120.00183 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6513 2.0994 1.2552 6 6 3.5648 1.4445 -0.1258 7 7 4.0423 2.8233 -0.2566 8 6 4.2979 3.7078 0.7544 9 6 4.1457 3.4453 2.2306 10 7 4.7023 4.8179 0.2051 11 7 4.7190 4.6960 -1.0742 12 6 4.3234 3.4916 -1.4125 13 7 4.2123 2.9924 -2.7005 14 6 2.8460 2.5233 -2.9673 15 6 4.6276 3.9944 -3.6912 16 1 5.6357 4.3383 -3.4594 17 6 3.6623 5.1809 -3.6520 18 6 4.6107 3.3784 -5.0664 19 1 4.3208 2.3456 -5.1919 20 6 4.9663 4.1329 -6.1643 21 7 5.3197 5.3904 -6.0113 22 14 4.9459 3.3691 -7.8688 23 1 4.5143 1.9516 -7.7709 24 1 3.9984 4.1159 -8.7346 25 1 6.3083 3.4328 -8.4560 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 2.0422 1.6180 2.0512 32 1 1.9203 3.0718 1.2528 33 1 3.8574 0.8735 -1.0070 34 1 4.0032 0.9909 0.7631 35 1 3.1379 3.7157 2.5456 36 1 4.3176 2.3878 2.4311 37 1 4.8715 4.0425 2.7825 38 1 2.1361 3.3123 -2.7193 39 1 2.7496 2.2661 -4.0220 40 1 2.6386 1.6433 -2.3583 41 1 2.6543 4.8370 -3.8836 42 1 3.6746 5.6265 -2.6573 43 1 3.9707 5.9246 -4.3867 44 1 5.5702 5.9212 -6.7836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577134080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:58 Heat of formation + Delta-G solvation = 90.534352 kcal Electronic energy + Delta-G solvation = -23775.206546 eV Core-core repulsion = 20571.476613 eV Total energy + Delta-G solvation = -3203.729932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.59930 -37.80814 -37.34928 -33.92302 -32.96400 -31.67542 -31.06069 -28.78923 -28.46661 -27.17032 -25.20451 -24.98821 -24.04764 -21.78935 -21.08738 -20.19836 -19.40969 -17.13840 -16.53516 -16.07334 -15.95578 -15.48851 -14.93941 -14.70625 -14.21774 -14.19086 -13.71969 -13.53867 -13.32492 -13.04737 -12.81935 -12.71509 -12.33664 -12.07155 -11.86205 -11.53692 -11.50751 -11.15377 -11.07346 -11.00900 -10.90830 -10.74789 -10.55060 -10.22174 -10.11630 -10.00355 -9.73937 -9.05308 -8.92587 -8.82131 -8.43002 -7.37947 -6.05789 -4.13297 2.18420 2.58839 3.26706 3.34546 3.37141 3.38376 4.20107 4.27268 4.41017 4.54110 4.59626 4.65881 4.77919 4.95518 4.98867 5.20869 5.25950 5.29812 5.34397 5.49023 5.57639 5.58131 5.69462 5.79957 5.85735 5.94174 5.97742 6.13848 6.18018 6.31313 6.46617 6.79617 6.82778 6.95744 7.08087 7.14195 7.19430 7.44427 7.62569 7.71857 7.94766 8.25805 8.41759 8.88455 9.34989 9.51447 11.00622 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.005409 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.259255 B = 5175.471705 C = 6247.771456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.071 3.929 4 H 0.093 0.907 5 N -0.838 5.838 6 C 0.073 3.927 7 N -0.489 5.489 8 C 0.133 3.867 9 C -0.059 4.059 10 N -0.282 5.282 11 N -0.315 5.315 12 C 0.387 3.613 13 N -0.450 5.450 14 C 0.028 3.972 15 C 0.228 3.772 16 H 0.054 0.946 17 C -0.171 4.171 18 C -0.515 4.515 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.337 0.663 32 H 0.345 0.655 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -10.745 14.560 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.042 4.042 4 H 0.111 0.889 5 N -0.369 5.369 6 C -0.053 4.053 7 N -0.187 5.187 8 C -0.134 4.134 9 C -0.119 4.119 10 N -0.122 5.122 11 N -0.160 5.160 12 C 0.032 3.968 13 N -0.173 5.173 14 C -0.120 4.120 15 C 0.124 3.876 16 H 0.072 0.928 17 C -0.231 4.231 18 C -0.554 4.554 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.109 0.891 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.393 -9.737 14.013 18.596 hybrid contribution 0.309 -1.005 -0.773 1.305 sum -7.084 -10.742 13.240 18.462 Atomic orbital electron populations 1.21639 0.94600 1.01016 1.02769 1.21477 0.97381 0.94014 1.02173 1.22105 0.90770 0.96905 0.94435 0.88860 1.58966 1.67305 1.07278 1.03394 1.22791 0.97097 0.80462 1.04919 1.46178 1.53341 1.12955 1.06177 1.24455 1.07626 0.88359 0.92986 1.20176 1.03603 1.02302 0.85801 1.73954 1.16586 1.19926 1.01730 1.74875 1.24497 1.12342 1.04261 1.23357 0.98506 0.87666 0.87263 1.59305 1.22862 1.38827 0.96353 1.22580 0.86941 0.98133 1.04303 1.19392 0.95797 0.85395 0.87014 0.92801 1.22409 0.97669 1.01843 1.01137 1.21053 1.46636 0.97675 0.90029 0.91765 1.24900 0.94997 0.94815 0.99170 1.69931 1.44722 1.07074 1.30352 0.86422 0.77710 0.79235 0.83899 1.19753 1.21013 1.20936 0.93205 0.91503 0.92886 0.91197 0.91854 0.84993 0.83937 0.87731 0.89428 0.90292 0.91301 0.89004 0.95101 0.88304 0.92909 0.96060 0.94316 0.89081 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.80 37.16 0.36 -0.83 16 2 C -0.11 -0.90 5.58 -26.73 -0.15 -1.05 16 3 C 0.07 0.70 2.43 -67.71 -0.16 0.54 16 4 H 0.09 1.17 6.20 -51.93 -0.32 0.85 16 5 N -0.84 -7.60 8.02 -4.66 -0.04 -7.64 16 6 C 0.07 0.82 4.66 -4.04 -0.02 0.81 16 7 N -0.49 -7.68 2.71 -114.08 -0.31 -7.99 16 8 C 0.13 2.07 6.99 -154.02 -1.08 0.99 16 9 C -0.06 -0.56 8.93 36.01 0.32 -0.24 16 10 N -0.28 -5.74 12.18 32.99 0.40 -5.34 16 11 N -0.32 -7.30 9.28 30.31 0.28 -7.02 16 12 C 0.39 8.01 6.71 -318.88 -2.14 5.87 16 13 N -0.45 -9.72 4.76 -176.08 -0.84 -10.56 16 14 C 0.03 0.50 7.53 60.07 0.45 0.96 16 15 C 0.23 5.87 2.03 -68.86 -0.14 5.73 16 16 H 0.05 1.60 7.97 -51.93 -0.41 1.18 16 17 C -0.17 -4.38 8.28 37.16 0.31 -4.07 16 18 C -0.52 -13.75 7.77 -34.44 -0.27 -14.02 16 19 H 0.06 1.67 6.84 -52.49 -0.36 1.31 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16 22 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.34 2.33 8.71 -39.29 -0.34 1.99 16 32 H 0.35 3.66 5.73 -39.30 -0.23 3.43 16 33 H 0.10 1.26 7.13 -51.93 -0.37 0.89 16 34 H 0.09 0.77 7.43 -51.93 -0.39 0.39 16 35 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 36 H 0.07 0.49 7.39 -51.93 -0.38 0.11 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.57 6.92 -51.93 -0.36 0.22 16 39 H 0.10 1.90 6.25 -51.93 -0.32 1.57 16 40 H 0.05 0.77 4.37 -51.93 -0.23 0.54 16 41 H 0.02 0.50 6.66 -51.93 -0.35 0.16 16 42 H 0.04 0.98 5.84 -51.93 -0.30 0.68 16 43 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -31.60 332.16 -9.17 -40.77 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.68 Total: 5.21 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.61 Total: -3.68 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.13 Total: -63.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.60 -9.17 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577134080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.304 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds