Wall clock time and date at job start Tue Mar 31 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 H 1.09001 * 109.47507 * 305.00110 * 3 2 1 5 5 N 1.46903 * 109.47393 * 64.99984 * 3 2 1 6 6 C 1.53001 * 109.47258 * 185.00288 * 3 2 1 7 7 N 1.46501 * 109.47396 * 174.55453 * 6 3 2 8 8 C 1.36734 * 127.13826 * 84.27407 * 7 6 3 9 9 C 1.50708 * 126.34458 * 0.27110 * 8 7 6 10 10 N 1.30293 * 107.30695 * 180.02562 * 8 7 6 11 11 N 1.28524 * 110.05109 * 0.02562 * 10 8 7 12 12 C 1.31213 * 109.86207 * 359.97438 * 11 10 8 13 13 N 1.38583 * 126.47145 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99893 * 237.13715 * 13 12 11 15 15 C 1.46895 * 111.00544 * 1.09044 * 13 12 11 16 16 H 1.09001 * 109.46831 * 54.99982 * 15 13 12 17 17 C 1.53008 * 109.46958 * 295.00422 * 15 13 12 18 18 C 1.50696 * 109.47500 * 175.00470 * 15 13 12 19 19 H 1.07996 * 120.00225 * 359.97438 * 18 15 13 20 20 C 1.37884 * 119.99986 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99871 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00062 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47064 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47093 * 119.99868 * 22 20 18 25 25 H 1.48492 * 109.47348 * 239.99881 * 22 20 18 26 26 H 1.08997 * 109.46787 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46881 * 299.99464 * 1 2 3 28 28 H 1.09003 * 109.47261 * 59.99838 * 1 2 3 29 29 H 1.08999 * 109.46881 * 240.00536 * 2 1 3 30 30 H 1.08997 * 109.47550 * 119.99839 * 2 1 3 31 31 H 1.00900 * 110.99236 * 59.99595 * 5 3 2 32 32 H 1.00893 * 110.99968 * 183.95078 * 5 3 2 33 33 H 1.09003 * 109.46864 * 54.54964 * 6 3 2 34 34 H 1.08998 * 109.46701 * 294.55512 * 6 3 2 35 35 H 1.09000 * 109.46474 * 269.70559 * 9 8 7 36 36 H 1.08993 * 109.47074 * 29.70394 * 9 8 7 37 37 H 1.09000 * 109.47002 * 149.70948 * 9 8 7 38 38 H 1.08995 * 109.46875 * 52.20286 * 14 13 12 39 39 H 1.08992 * 109.47096 * 172.20642 * 14 13 12 40 40 H 1.09006 * 109.46800 * 292.20921 * 14 13 12 41 41 H 1.08996 * 109.47138 * 299.99912 * 17 15 13 42 42 H 1.09001 * 109.46893 * 59.99762 * 17 15 13 43 43 H 1.08994 * 109.47084 * 179.97438 * 17 15 13 44 44 H 0.96996 * 120.00183 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6513 2.0994 1.2552 6 6 3.5648 1.4445 -0.1258 7 7 4.0423 2.8233 -0.2566 8 6 4.2979 3.7078 0.7544 9 6 4.1457 3.4453 2.2306 10 7 4.7023 4.8179 0.2051 11 7 4.7190 4.6960 -1.0742 12 6 4.3234 3.4916 -1.4125 13 7 4.2123 2.9924 -2.7005 14 6 2.8460 2.5233 -2.9673 15 6 4.6276 3.9944 -3.6912 16 1 5.6357 4.3383 -3.4594 17 6 3.6623 5.1809 -3.6520 18 6 4.6107 3.3784 -5.0664 19 1 4.3208 2.3456 -5.1919 20 6 4.9663 4.1329 -6.1643 21 7 5.3197 5.3904 -6.0113 22 14 4.9459 3.3691 -7.8688 23 1 4.5143 1.9516 -7.7709 24 1 3.9984 4.1159 -8.7346 25 1 6.3083 3.4328 -8.4560 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 2.0422 1.6180 2.0512 32 1 1.9203 3.0718 1.2528 33 1 3.8574 0.8735 -1.0070 34 1 4.0032 0.9909 0.7631 35 1 3.1379 3.7157 2.5456 36 1 4.3176 2.3878 2.4311 37 1 4.8715 4.0425 2.7825 38 1 2.1361 3.3123 -2.7193 39 1 2.7496 2.2661 -4.0220 40 1 2.6386 1.6433 -2.3583 41 1 2.6543 4.8370 -3.8836 42 1 3.6746 5.6265 -2.6573 43 1 3.9707 5.9246 -4.3867 44 1 5.5702 5.9212 -6.7836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577134080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:57 Heat of formation + Delta-G solvation = 69.547119 kcal Electronic energy + Delta-G solvation = -23776.116620 eV Core-core repulsion = 20571.476613 eV Total energy + Delta-G solvation = -3204.640007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.99996 -39.15244 -38.63588 -35.18028 -34.76653 -32.87436 -31.85669 -30.70021 -29.60843 -28.31068 -27.26086 -26.54278 -24.94348 -23.45463 -21.95941 -21.46527 -20.96568 -18.51984 -17.89541 -17.60925 -17.22717 -16.98627 -16.46550 -15.81211 -15.55901 -15.24444 -15.00469 -14.86448 -14.50658 -14.27734 -13.89201 -13.65426 -13.59152 -13.33479 -13.13690 -12.96169 -12.77784 -12.72985 -12.59205 -12.53435 -12.29585 -12.09820 -11.99478 -11.80140 -11.65372 -11.40963 -11.18632 -10.93383 -10.60530 -10.52261 -9.65321 -9.00649 -8.13889 -6.29307 0.85084 1.32298 1.43960 1.45339 1.57329 1.91184 2.40862 2.98048 3.16027 3.41598 3.47282 3.67901 3.74989 3.93015 4.04031 4.17066 4.23130 4.35114 4.42555 4.54727 4.60798 4.63294 4.64580 4.74995 4.84716 4.91602 4.97659 5.01144 5.04583 5.07686 5.15335 5.19671 5.33753 5.45158 5.54535 5.57841 5.61644 5.86091 6.05562 6.05957 6.18953 6.52004 6.57181 6.80324 7.39737 7.89773 8.93199 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.005409 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.259255 B = 5175.471705 C = 6247.771456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.079 3.921 4 H 0.065 0.935 5 N -0.836 5.836 6 C 0.065 3.935 7 N -0.477 5.477 8 C 0.166 3.834 9 C -0.060 4.060 10 N -0.336 5.336 11 N -0.368 5.368 12 C 0.364 3.636 13 N -0.454 5.454 14 C 0.035 3.965 15 C 0.241 3.759 16 H 0.002 0.998 17 C -0.152 4.152 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.971 3.029 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.354 0.646 32 H 0.337 0.663 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.020 0.980 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.028 0.972 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -13.840 16.299 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.034 4.034 4 H 0.083 0.917 5 N -0.368 5.368 6 C -0.058 4.058 7 N -0.174 5.174 8 C -0.103 4.103 9 C -0.119 4.119 10 N -0.175 5.175 11 N -0.212 5.212 12 C 0.006 3.994 13 N -0.176 5.176 14 C -0.112 4.112 15 C 0.135 3.865 16 H 0.020 0.980 17 C -0.211 4.211 18 C -0.563 4.563 19 H 0.090 0.910 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.795 3.205 23 H -0.182 1.182 24 H -0.206 1.206 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.542 -12.873 15.799 22.097 hybrid contribution 0.625 -0.070 -1.112 1.278 sum -7.917 -12.943 14.687 21.116 Atomic orbital electron populations 1.21619 0.94918 1.01524 1.01836 1.21467 0.96955 0.92536 1.03509 1.21989 0.89440 0.97948 0.94012 0.91699 1.58922 1.67408 1.06811 1.03645 1.23232 0.98227 0.77922 1.06468 1.46356 1.52279 1.14333 1.04394 1.25602 1.02993 0.86632 0.95098 1.20539 1.05336 1.04872 0.81145 1.73852 1.20056 1.22682 1.00902 1.74704 1.25874 1.14491 1.06141 1.23189 0.99987 0.88180 0.88000 1.59170 1.24669 1.37489 0.96320 1.22607 0.85044 0.99113 1.04404 1.18926 0.93172 0.86295 0.88102 0.97961 1.22171 0.97927 1.01256 0.99785 1.21341 1.46345 0.98021 0.90556 0.90961 1.25809 0.94483 0.95148 1.03323 1.70094 1.45658 1.08606 1.31458 0.85317 0.77522 0.78964 0.78664 1.18220 1.20629 1.20974 0.91993 0.91990 0.94284 0.90788 0.89606 0.83071 0.84885 0.88268 0.85674 0.87850 0.87696 0.88254 0.96153 0.89323 0.89015 0.95318 0.94857 0.91944 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.80 71.98 0.71 -1.26 16 2 C -0.11 -1.31 5.58 30.60 0.17 -1.14 16 3 C 0.08 1.34 2.43 44.92 0.11 1.45 16 4 H 0.06 1.51 6.20 -2.39 -0.01 1.49 16 5 N -0.84 -12.18 8.02 -168.67 -1.35 -13.53 16 6 C 0.07 1.26 4.66 86.38 0.40 1.66 16 7 N -0.48 -14.30 2.71 -514.85 -1.40 -15.70 16 8 C 0.17 4.88 6.99 137.64 0.96 5.84 16 9 C -0.06 -0.90 8.93 71.24 0.64 -0.27 16 10 N -0.34 -13.93 12.18 -49.53 -0.60 -14.53 16 11 N -0.37 -17.82 9.28 -58.01 -0.54 -18.36 16 12 C 0.36 15.35 6.71 260.11 1.75 17.10 16 13 N -0.45 -20.04 4.76 -711.00 -3.39 -23.43 16 14 C 0.03 1.27 7.53 127.69 0.96 2.23 16 15 C 0.24 13.00 2.03 44.17 0.09 13.09 16 16 H 0.00 0.15 7.97 -2.39 -0.02 0.13 16 17 C -0.15 -8.20 8.28 71.98 0.60 -7.60 16 18 C -0.52 -28.62 7.77 25.60 0.20 -28.42 16 19 H 0.07 3.75 6.84 -2.91 -0.02 3.73 16 20 C 0.01 0.65 5.30 84.66 0.45 1.10 16 21 N -0.92 -54.58 11.32 21.45 0.24 -54.33 16 22 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.35 3.10 8.71 -89.69 -0.78 2.32 16 32 H 0.34 6.09 5.73 -89.70 -0.51 5.58 16 33 H 0.10 2.10 7.13 -2.39 -0.02 2.08 16 34 H 0.13 1.53 7.43 -2.39 -0.02 1.51 16 35 H 0.10 1.17 6.75 -2.39 -0.02 1.15 16 36 H 0.10 0.88 7.39 -2.39 -0.02 0.86 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.02 0.76 6.92 -2.39 -0.02 0.74 16 39 H 0.09 3.39 6.25 -2.39 -0.01 3.37 16 40 H 0.09 2.56 4.37 -2.38 -0.01 2.55 16 41 H 0.03 1.43 6.66 -2.39 -0.02 1.42 16 42 H 0.03 1.79 5.84 -2.39 -0.01 1.78 16 43 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 44 H 0.26 14.76 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.52 332.16 1.75 -72.77 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.27 Total: 18.16 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 7.03 Total: 3.77 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -7.03 Total: -139.88 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.52 1.75 -72.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577134080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.319 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds