Wall clock time and date at job start Tue Mar 31 2020 05:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.08997 * 109.47007 * 54.99523 * 3 2 1 5 5 N 1.46902 * 109.47113 * 295.00044 * 3 2 1 6 6 C 1.53001 * 109.47381 * 175.00163 * 3 2 1 7 7 N 1.46500 * 109.47319 * 184.89457 * 6 3 2 8 8 C 1.36736 * 127.13508 * 264.65305 * 7 6 3 9 9 C 1.50706 * 126.34661 * 359.96882 * 8 7 6 10 10 N 1.30290 * 107.30788 * 180.02562 * 8 7 6 11 11 N 1.28528 * 110.05290 * 359.97438 * 10 8 7 12 12 C 1.31220 * 109.86111 * 0.02562 * 11 10 8 13 13 N 1.38580 * 126.47703 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00039 * 256.85351 * 13 12 11 15 15 C 1.46902 * 110.99705 * 20.80531 * 13 12 11 16 16 H 1.08999 * 109.47177 * 300.00016 * 15 13 12 17 17 C 1.53000 * 109.46983 * 60.00176 * 15 13 12 18 18 C 1.50694 * 109.47020 * 179.97438 * 15 13 12 19 19 H 1.08004 * 120.00356 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99929 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99979 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00110 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.46901 * 60.00202 * 22 20 18 24 24 H 1.48494 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47334 * 300.00561 * 22 20 18 26 26 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47314 * 300.00408 * 1 2 3 28 28 H 1.09007 * 109.47041 * 60.00495 * 1 2 3 29 29 H 1.09003 * 109.47338 * 240.00006 * 2 1 3 30 30 H 1.08999 * 109.47339 * 119.99594 * 2 1 3 31 31 H 1.00911 * 110.99680 * 306.11667 * 5 3 2 32 32 H 1.00897 * 111.00097 * 70.06865 * 5 3 2 33 33 H 1.08996 * 109.47298 * 64.88784 * 6 3 2 34 34 H 1.09000 * 109.46905 * 304.88834 * 6 3 2 35 35 H 1.08994 * 109.47383 * 270.00655 * 9 8 7 36 36 H 1.09002 * 109.46876 * 30.00492 * 9 8 7 37 37 H 1.09001 * 109.46840 * 150.00728 * 9 8 7 38 38 H 1.08999 * 109.47073 * 66.27284 * 14 13 12 39 39 H 1.08996 * 109.46896 * 186.26980 * 14 13 12 40 40 H 1.08998 * 109.47134 * 306.27146 * 14 13 12 41 41 H 1.09009 * 109.47312 * 299.99982 * 17 15 13 42 42 H 1.08999 * 109.47294 * 59.99912 * 17 15 13 43 43 H 1.09004 * 109.47398 * 179.97438 * 17 15 13 44 44 H 0.96998 * 119.99323 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6513 2.0993 -1.2552 6 6 3.5648 1.4444 0.1257 7 7 4.0434 2.8240 0.2432 8 6 4.4977 3.6288 -0.7645 9 6 4.6030 3.2615 -2.2223 10 7 4.8238 4.7717 -0.2307 11 7 4.6077 4.7442 1.0360 12 6 4.1286 3.5723 1.3811 13 7 3.7760 3.1705 2.6596 14 6 4.8008 2.2900 3.2361 15 6 3.5300 4.3304 3.5269 16 1 4.4338 4.9366 3.5878 17 6 2.3910 5.1699 2.9448 18 6 3.1494 3.8551 4.9053 19 1 3.0959 2.7973 5.1163 20 6 2.8693 4.7709 5.8974 21 7 2.9339 6.0591 5.6404 22 14 2.3968 4.1818 7.6059 23 1 3.5017 3.3668 8.1716 24 1 2.1483 5.3543 8.4826 25 1 1.1654 3.3560 7.5219 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9577 1.5635 -2.0536 32 1 0.6554 2.2582 -1.2870 33 1 4.0028 0.9819 -0.7587 34 1 3.8569 0.8818 1.0124 35 1 5.5839 2.8285 -2.4180 36 1 3.8291 2.5352 -2.4708 37 1 4.4720 4.1551 -2.8325 38 1 5.7203 2.8548 3.3899 39 1 4.4495 1.9006 4.1916 40 1 4.9930 1.4613 2.5546 41 1 2.6659 5.5137 1.9476 42 1 1.4872 4.5637 2.8839 43 1 2.2082 6.0304 3.5886 44 1 2.7365 6.7032 6.3383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577134081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:00 Heat of formation + Delta-G solvation = 85.921515 kcal Electronic energy + Delta-G solvation = -23683.225101 eV Core-core repulsion = 20479.295141 eV Total energy + Delta-G solvation = -3203.929960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28816 -37.60672 -36.98149 -33.92182 -32.87167 -31.21547 -30.90886 -29.18329 -28.28661 -27.10877 -25.17499 -24.37917 -23.81241 -21.73148 -20.90865 -20.12115 -19.25453 -16.85493 -16.38736 -16.05004 -15.78090 -15.17273 -14.80826 -14.61535 -14.35216 -13.98211 -13.75087 -13.55031 -13.02754 -12.78830 -12.62976 -12.57759 -12.24634 -11.96536 -11.93648 -11.69823 -11.36895 -11.08218 -11.04435 -10.88712 -10.84000 -10.60170 -10.25126 -10.13739 -10.01641 -9.77492 -9.52385 -9.10287 -8.79256 -8.50481 -8.35591 -7.32152 -6.00057 -4.07511 2.42288 2.86591 3.31140 3.36471 3.37663 3.59569 4.28657 4.35801 4.51331 4.69359 4.78501 4.84151 4.87570 4.92938 5.28357 5.30334 5.33515 5.35413 5.44475 5.58849 5.62847 5.73283 5.75748 5.88489 5.94566 6.01506 6.09097 6.22636 6.39794 6.51828 6.61690 6.97323 7.03812 7.07807 7.23139 7.27667 7.37285 7.53692 7.77742 7.83632 8.04312 8.31077 8.54688 8.94843 9.53558 9.58171 11.06294 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.005765 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.954885 B = 4855.838619 C = 5823.308265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.099 0.901 5 N -0.836 5.836 6 C 0.127 3.873 7 N -0.469 5.469 8 C 0.169 3.831 9 C -0.053 4.053 10 N -0.299 5.299 11 N -0.317 5.317 12 C 0.377 3.623 13 N -0.462 5.462 14 C 0.044 3.956 15 C 0.230 3.770 16 H 0.023 0.977 17 C -0.131 4.131 18 C -0.515 4.515 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.333 0.667 32 H 0.345 0.655 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.087 0.913 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 -14.065 -13.963 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C -0.037 4.037 4 H 0.117 0.883 5 N -0.366 5.366 6 C 0.002 3.998 7 N -0.164 5.164 8 C -0.099 4.099 9 C -0.112 4.112 10 N -0.140 5.140 11 N -0.161 5.161 12 C 0.021 3.979 13 N -0.187 5.187 14 C -0.103 4.103 15 C 0.126 3.874 16 H 0.041 0.959 17 C -0.189 4.189 18 C -0.554 4.554 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.106 0.894 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.127 -12.094 -13.500 18.160 hybrid contribution -0.843 -2.150 0.793 2.442 sum -1.970 -14.244 -12.707 19.189 Atomic orbital electron populations 1.21755 0.95266 1.01839 1.02133 1.22254 0.96879 0.97639 1.02599 1.21868 0.94237 0.93129 0.94479 0.88258 1.58841 1.21100 1.53500 1.03121 1.21738 0.94415 0.80347 1.03305 1.45985 1.50150 1.13251 1.07001 1.24382 1.03423 0.88931 0.93121 1.20022 1.01937 1.02929 0.86315 1.73933 1.19929 1.17928 1.02180 1.74740 1.18678 1.17469 1.05195 1.22970 0.98114 0.88258 0.88586 1.59199 1.39530 1.22983 0.97034 1.22262 0.92953 0.94855 1.00276 1.19303 0.95565 0.83863 0.88666 0.95878 1.21786 0.97405 1.01204 0.98493 1.21027 1.47691 0.93155 0.93518 0.91902 1.24902 0.95348 0.94813 0.98840 1.69920 1.48423 1.00452 1.33380 0.86557 0.78935 0.78077 0.83772 1.20290 1.21262 1.20289 0.92542 0.91999 0.93038 0.92052 0.90927 0.85423 0.84154 0.89806 0.88721 0.91219 0.90598 0.89576 0.95082 0.89017 0.94049 0.95937 0.95772 0.89419 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.69 37.15 0.36 -0.88 16 2 C -0.15 -1.27 5.52 -26.73 -0.15 -1.42 16 3 C 0.08 0.84 3.03 -67.71 -0.21 0.63 16 4 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 5 N -0.84 -8.27 8.38 -4.67 -0.04 -8.31 16 6 C 0.13 1.52 5.59 -4.04 -0.02 1.49 16 7 N -0.47 -7.88 2.73 -114.08 -0.31 -8.19 16 8 C 0.17 2.89 8.07 -154.02 -1.24 1.65 16 9 C -0.05 -0.59 10.04 36.01 0.36 -0.23 16 10 N -0.30 -6.51 12.18 32.99 0.40 -6.11 16 11 N -0.32 -7.69 10.03 30.32 0.30 -7.38 16 12 C 0.38 8.08 6.03 -318.87 -1.92 6.15 16 13 N -0.46 -10.17 4.66 -176.09 -0.82 -10.99 16 14 C 0.04 0.85 9.10 60.06 0.55 1.39 16 15 C 0.23 6.06 1.73 -68.87 -0.12 5.94 16 16 H 0.02 0.70 7.91 -51.93 -0.41 0.29 16 17 C -0.13 -3.49 8.80 37.16 0.33 -3.17 16 18 C -0.52 -13.93 7.95 -34.44 -0.27 -14.20 16 19 H 0.06 1.63 6.40 -52.48 -0.34 1.29 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -25.64 11.32 55.43 0.63 -25.02 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.38 7.03 -51.93 -0.36 0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.33 2.46 8.24 -39.29 -0.32 2.14 16 32 H 0.34 3.21 7.84 -39.29 -0.31 2.90 16 33 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 34 H 0.09 1.12 6.62 -51.93 -0.34 0.78 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.69 6.33 -51.93 -0.33 0.36 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.75 6.32 -51.93 -0.33 1.42 16 40 H 0.04 0.65 6.61 -51.93 -0.34 0.30 16 41 H 0.02 0.59 6.24 -51.92 -0.32 0.27 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 2.53 6.07 -51.93 -0.31 2.22 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -33.04 345.80 -9.14 -42.18 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.06 Total: 3.56 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.43 Total: -0.99 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: 0.16 Total: -66.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.04 -9.14 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577134081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.106 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds