Wall clock time and date at job start Tue Mar 31 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47361 * 2 1 4 4 N 1.30289 * 126.34867 * 269.96327 * 3 2 1 5 5 N 1.28523 * 110.05441 * 180.02562 * 4 3 2 6 6 C 1.31225 * 109.85983 * 359.73614 * 5 4 3 7 7 N 1.38582 * 126.47038 * 180.26081 * 6 5 4 8 8 C 1.46897 * 111.00225 * 304.87826 * 7 6 5 9 9 C 1.46899 * 111.00065 * 68.83802 * 7 6 5 10 10 H 1.08999 * 109.46861 * 299.99649 * 9 7 6 11 11 C 1.53004 * 109.47282 * 59.99398 * 9 7 6 12 12 C 1.50701 * 109.47130 * 179.97438 * 9 7 6 13 13 H 1.07991 * 119.99915 * 359.97438 * 12 9 7 14 14 C 1.37874 * 119.99698 * 179.97438 * 12 9 7 15 15 N 1.31514 * 120.00419 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99659 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47163 * 90.00254 * 16 14 12 18 18 H 1.48501 * 109.47364 * 209.99596 * 16 14 12 19 19 H 1.48495 * 109.47283 * 329.99967 * 16 14 12 20 20 N 1.36449 * 107.05073 * 0.40784 * 6 5 4 21 21 C 1.46499 * 127.13259 * 179.87019 * 20 6 5 22 22 C 1.53004 * 109.47381 * 275.35087 * 21 20 6 23 23 H 1.08998 * 109.46589 * 54.62714 * 22 21 20 24 24 C 1.52995 * 109.47272 * 174.62560 * 22 21 20 25 25 N 1.46897 * 109.47166 * 294.62579 * 22 21 20 26 26 H 1.09008 * 109.46816 * 299.99532 * 1 2 3 27 27 H 1.08998 * 109.47428 * 59.99783 * 1 2 3 28 28 H 1.09004 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46672 * 239.99947 * 2 1 3 30 30 H 1.09003 * 109.47086 * 120.00519 * 2 1 3 31 31 H 1.08998 * 109.46853 * 55.33264 * 8 7 6 32 32 H 1.09000 * 109.46951 * 175.32909 * 8 7 6 33 33 H 1.08999 * 109.47033 * 295.33004 * 8 7 6 34 34 H 1.09000 * 109.46687 * 180.02562 * 11 9 7 35 35 H 1.08995 * 109.46847 * 300.00048 * 11 9 7 36 36 H 1.08999 * 109.46968 * 60.00317 * 11 9 7 37 37 H 0.96999 * 120.00205 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.46869 * 155.35311 * 21 20 6 39 39 H 1.09003 * 109.47198 * 35.35476 * 21 20 6 40 40 H 1.09000 * 109.47379 * 180.02562 * 24 22 21 41 41 H 1.09001 * 109.46946 * 60.00062 * 24 22 21 42 42 H 1.09006 * 109.47231 * 300.00355 * 24 22 21 43 43 H 1.00891 * 111.00175 * 299.99945 * 25 22 21 44 44 H 1.00905 * 110.99679 * 63.95186 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2904 2.1486 -1.0494 5 7 2.7020 3.3115 -0.6888 6 6 2.7234 3.3905 0.6209 7 7 3.1049 4.4897 1.3737 8 6 4.4552 4.9364 1.0064 9 6 2.1335 5.5834 1.2383 10 1 2.0667 5.8824 0.1922 11 6 0.7614 5.1097 1.7220 12 6 2.5807 6.7582 2.0695 13 1 3.4947 6.6982 2.6415 14 6 1.8227 7.9095 2.0996 15 7 0.7099 7.9827 1.4027 16 14 2.3766 9.3655 3.1305 17 1 3.2408 10.2523 2.3107 18 1 1.1875 10.1245 3.5945 19 1 3.1418 8.8774 4.3058 20 7 2.3022 2.1849 1.1014 21 6 2.1623 1.7926 2.5059 22 6 3.5122 1.3054 3.0364 23 1 4.2674 2.0730 2.8673 24 6 3.3990 1.0228 4.5358 25 7 3.8989 0.0746 2.3340 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.4940 5.1329 -0.0650 32 1 4.6972 5.8484 1.5520 33 1 5.1764 4.1593 1.2597 34 1 0.0407 5.9211 1.6210 35 1 0.4379 4.2598 1.1210 36 1 0.8283 4.8107 2.7680 37 1 0.1769 8.7929 1.4236 38 1 1.4288 0.9905 2.5878 39 1 1.8299 2.6500 3.0912 40 1 4.3608 0.6762 4.9138 41 1 2.6437 0.2553 4.7049 42 1 3.1120 1.9361 5.0570 43 1 3.2142 -0.6528 2.4754 44 1 4.0430 0.2495 1.3507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578300953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:02 Heat of formation + Delta-G solvation = 80.249113 kcal Electronic energy + Delta-G solvation = -23857.310930 eV Core-core repulsion = 20653.134996 eV Total energy + Delta-G solvation = -3204.175934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59547 -37.24415 -37.10255 -34.07342 -33.24309 -32.69604 -29.52172 -29.38503 -28.55857 -26.77282 -25.59884 -24.38818 -23.92007 -21.95338 -21.19890 -20.20117 -19.39405 -17.03981 -16.49879 -16.12390 -16.01290 -15.30023 -14.83591 -14.75646 -14.36959 -14.11424 -13.89397 -13.71809 -13.17894 -12.63624 -12.53618 -12.42028 -12.16082 -12.02966 -11.90478 -11.73544 -11.38408 -11.15658 -11.14924 -11.06426 -10.94211 -10.82601 -10.42585 -10.33123 -10.15228 -10.04479 -10.02651 -9.13654 -8.81931 -8.59538 -8.44113 -7.73073 -6.12568 -4.19371 2.14460 2.63930 3.24814 3.30048 3.31975 3.34808 4.27881 4.29467 4.40012 4.52917 4.67742 4.79081 4.80654 5.07878 5.09859 5.20197 5.29402 5.32562 5.52110 5.59102 5.63580 5.67777 5.76403 5.95394 5.98722 6.03857 6.04630 6.19856 6.35454 6.45129 6.61335 6.66009 6.82006 6.88914 6.90016 7.09440 7.20026 7.32509 7.60055 7.69766 7.85284 8.12235 8.40794 8.84478 9.22751 9.45812 10.94438 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.005548 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.166634 B = 5045.912838 C = 5599.584016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C 0.150 3.850 4 N -0.287 5.287 5 N -0.323 5.323 6 C 0.386 3.614 7 N -0.472 5.472 8 C 0.046 3.954 9 C 0.224 3.776 10 H 0.018 0.982 11 C -0.130 4.130 12 C -0.511 4.511 13 H 0.068 0.932 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.467 5.467 21 C 0.078 3.922 22 C 0.076 3.924 23 H 0.094 0.906 24 C -0.139 4.139 25 N -0.840 5.840 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.092 0.908 35 H -0.001 1.001 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.335 0.665 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -15.910 4.087 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.117 4.117 4 N -0.128 5.128 5 N -0.166 5.166 6 C 0.030 3.970 7 N -0.199 5.199 8 C -0.101 4.101 9 C 0.120 3.880 10 H 0.036 0.964 11 C -0.188 4.188 12 C -0.550 4.550 13 H 0.086 0.914 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.729 3.271 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.160 5.160 21 C -0.048 4.048 22 C -0.036 4.036 23 H 0.112 0.888 24 C -0.198 4.198 25 N -0.370 5.370 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.018 0.982 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.148 0.852 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.191 -15.484 3.582 16.043 hybrid contribution -0.993 0.925 0.608 1.487 sum 1.198 -14.559 4.190 15.197 Atomic orbital electron populations 1.21758 0.93852 1.02106 1.02929 1.19920 0.96569 0.86829 1.03625 1.24571 1.06572 0.97461 0.83146 1.73923 1.15313 0.99277 1.24274 1.74681 1.20670 1.12255 1.09017 1.22839 0.98192 0.87655 0.88272 1.59247 1.05308 1.05280 1.50045 1.22253 0.86859 1.00928 1.00106 1.19418 0.86634 0.85060 0.96874 0.96412 1.21817 1.00189 0.99165 0.97627 1.21036 1.08681 0.96788 1.28470 0.91428 1.24921 0.94816 0.98611 0.95614 1.69894 1.14058 1.27973 1.40753 0.86446 0.78148 0.82147 0.80385 1.20558 1.21206 1.19748 1.46339 1.50341 1.11668 1.07683 1.22755 0.99982 1.02782 0.79237 1.21827 0.94526 0.92526 0.94756 0.88795 1.21715 1.02592 1.02010 0.93450 1.58975 1.52265 1.08690 1.17028 0.92804 0.91608 0.91566 0.88494 0.90996 0.94620 0.88781 0.93672 0.88946 0.98155 0.94908 0.92695 0.89708 0.87473 0.91297 0.92762 0.91350 0.85177 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.03 -0.31 5.97 -27.89 -0.17 -0.48 16 3 C 0.15 2.37 6.51 -154.02 -1.00 1.37 16 4 N -0.29 -5.76 12.18 32.99 0.40 -5.35 16 5 N -0.32 -7.27 11.94 30.32 0.36 -6.91 16 6 C 0.39 7.92 5.10 -318.87 -1.63 6.30 16 7 N -0.47 -10.12 4.66 -176.08 -0.82 -10.94 16 8 C 0.05 0.92 9.33 60.06 0.56 1.48 16 9 C 0.22 5.65 2.02 -68.86 -0.14 5.51 16 10 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 11 C -0.13 -3.17 8.84 37.16 0.33 -2.84 16 12 C -0.51 -13.38 7.82 -34.44 -0.27 -13.65 16 13 H 0.07 1.72 6.44 -52.49 -0.34 1.38 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 N -0.47 -7.61 2.54 -114.08 -0.29 -7.89 16 21 C 0.08 1.00 5.56 -4.04 -0.02 0.98 16 22 C 0.08 0.87 3.62 -67.72 -0.25 0.63 16 23 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 24 C -0.14 -1.31 9.49 37.16 0.35 -0.95 16 25 N -0.84 -8.64 8.78 -4.67 -0.04 -8.68 16 26 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.58 6.04 -51.93 -0.31 0.27 16 31 H 0.04 0.75 7.90 -51.93 -0.41 0.33 16 32 H 0.09 1.89 5.97 -51.93 -0.31 1.58 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 35 H 0.00 -0.01 7.22 -51.93 -0.38 -0.39 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16 39 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.34 2.73 7.95 -39.30 -0.31 2.42 16 44 H 0.34 3.98 7.67 -39.29 -0.30 3.68 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -30.51 350.60 -8.73 -39.25 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.28 Total: 5.16 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.95 Total: -1.18 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.24 Total: -64.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.51 -8.73 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578300953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.495 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds