Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36945 * 119.99772 * 2 1 4 4 H 1.08000 * 119.99793 * 202.34696 * 3 2 1 5 5 C 1.38807 * 119.99982 * 22.34603 * 3 2 1 6 6 N 1.31616 * 120.00015 * 11.34592 * 5 3 2 7 7 Si 1.86799 * 120.00247 * 191.34379 * 5 3 2 8 8 H 1.48495 * 109.47037 * 89.99878 * 7 5 3 9 9 H 1.48493 * 109.47466 * 210.00122 * 7 5 3 10 10 H 1.48508 * 109.46988 * 330.00332 * 7 5 3 11 11 C 1.46502 * 120.00379 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47228 * 270.00078 * 11 2 1 13 13 N 1.46505 * 109.46869 * 180.02562 * 12 11 2 14 14 C 1.34781 * 119.99526 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00134 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99451 * 179.97438 * 14 13 12 17 17 C 1.54135 * 110.74350 * 206.01104 * 16 14 13 18 18 C 1.55166 * 102.88392 * 98.16257 * 17 16 14 19 19 C 1.54833 * 101.65759 * 36.15899 * 18 17 16 20 20 N 1.47850 * 111.38144 * 325.29462 * 16 14 13 21 21 C 1.47958 * 108.37478 * 120.68962 * 20 16 14 22 22 C 1.54834 * 105.06310 * 337.18161 * 21 20 16 23 23 C 1.54134 * 110.74461 * 84.57358 * 16 14 13 24 24 H 1.08997 * 109.47153 * 274.20679 * 1 2 3 25 25 H 1.08998 * 109.47554 * 34.21134 * 1 2 3 26 26 H 1.09004 * 109.46638 * 154.20967 * 1 2 3 27 27 H 0.97001 * 120.00407 * 179.97438 * 6 5 3 28 28 H 1.09008 * 109.46822 * 149.99728 * 11 2 1 29 29 H 1.09001 * 109.46602 * 30.00230 * 11 2 1 30 30 H 1.08996 * 109.47030 * 59.99559 * 12 11 2 31 31 H 1.08998 * 109.46720 * 299.99666 * 12 11 2 32 32 H 0.96992 * 119.99886 * 359.97438 * 13 12 11 33 33 H 1.09006 * 110.73310 * 339.81897 * 17 16 14 34 34 H 1.09003 * 110.73484 * 216.51477 * 17 16 14 35 35 H 1.09002 * 110.98873 * 154.24901 * 18 17 16 36 36 H 1.08992 * 110.98843 * 278.06087 * 18 17 16 37 37 H 1.08995 * 110.32876 * 82.22908 * 19 18 17 38 38 H 1.09006 * 110.31520 * 204.43466 * 19 18 17 39 39 H 1.08999 * 110.32000 * 218.28431 * 21 20 16 40 40 H 1.08998 * 110.40649 * 96.12511 * 21 20 16 41 41 H 1.08995 * 110.98867 * 278.57953 * 22 21 20 42 42 H 1.08997 * 110.98653 * 154.76577 * 22 21 20 43 43 H 1.09010 * 110.73137 * 20.18208 * 23 16 14 44 44 H 1.08997 * 110.73385 * 143.47973 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3841 2.2690 1.0936 7 14 2.3365 4.0048 0.1688 8 1 1.8677 4.5632 -1.1249 9 1 1.9680 4.9303 1.2700 10 1 3.8122 3.8420 0.1319 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 7 3.1857 -2.9781 1.4437 14 6 3.5224 -3.5614 2.6112 15 8 3.2188 -3.0360 3.6613 16 6 4.2760 -4.8664 2.6117 17 6 4.0012 -5.6551 3.9072 18 6 2.9038 -6.6624 3.4728 19 6 3.3406 -6.9961 2.0254 20 7 3.8671 -5.7254 1.4799 21 6 5.0604 -6.0036 0.6506 22 6 6.0447 -4.8497 0.9620 23 6 5.7917 -4.6216 2.4758 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4471 27 1 -0.0461 3.0774 1.4133 28 1 3.1500 -1.1385 -0.5134 29 1 1.6085 -2.0285 -0.5130 30 1 1.5002 -1.8398 1.9571 31 1 3.0417 -0.9498 1.9567 32 1 3.4282 -3.3984 0.6039 33 1 3.6298 -4.9938 4.6901 34 1 4.8979 -6.1798 4.2371 35 1 2.9208 -7.5531 4.1009 36 1 1.9187 -6.1962 3.4858 37 1 4.1205 -7.7576 2.0312 38 1 2.4851 -7.3336 1.4402 39 1 4.7956 -6.0004 -0.4067 40 1 5.5005 -6.9617 0.9271 41 1 5.7962 -3.9584 0.3860 42 1 7.0749 -5.1556 0.7801 43 1 6.0445 -3.6000 2.7596 44 1 6.3536 -5.3394 3.0733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753055376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -6.618144 kcal Electronic energy + Delta-G solvation = -23065.345455 eV Core-core repulsion = 19825.109923 eV Total energy + Delta-G solvation = -3240.235532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93420 -38.21702 -35.96064 -34.37517 -33.76020 -31.52644 -31.20708 -28.83173 -27.60768 -25.81988 -25.66653 -23.62473 -21.89306 -21.51895 -20.91504 -20.52333 -19.00368 -17.37846 -16.67643 -16.29022 -15.42348 -15.08388 -14.79726 -14.65839 -14.40378 -14.03418 -13.65827 -13.57269 -13.19301 -13.11751 -12.58850 -12.32283 -12.22566 -12.08617 -11.78092 -11.65660 -11.28062 -11.18021 -11.13446 -10.98667 -10.84200 -10.77974 -10.57840 -10.54175 -10.21134 -9.94427 -9.86154 -9.59129 -8.65859 -8.53701 -8.42832 -6.77222 -5.70231 -3.17305 2.92557 3.40451 3.46296 3.48419 3.61918 3.72561 4.30445 4.31348 4.53509 4.58478 4.74772 4.82320 4.91160 5.07502 5.15088 5.27909 5.36089 5.45148 5.48919 5.57068 5.62447 5.66644 5.72712 5.74909 5.80872 5.94022 5.96444 5.97013 6.05594 6.12339 6.36613 6.54865 6.70057 6.77316 6.81215 6.87390 7.11411 7.41439 7.76508 7.84016 8.03730 8.41457 8.69610 9.25444 9.87722 10.36239 11.34873 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.003843 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.831775 B = 7283.902297 C = 7451.472808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.145 3.855 12 C 0.094 3.906 13 N -0.708 5.708 14 C 0.535 3.465 15 O -0.549 6.549 16 C 0.069 3.931 17 C -0.127 4.127 18 C -0.133 4.133 19 C 0.036 3.964 20 N -0.504 5.504 21 C 0.032 3.968 22 C -0.135 4.135 23 C -0.126 4.126 24 H 0.029 0.971 25 H 0.046 0.954 26 H -0.002 1.002 27 H 0.253 0.747 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.591 -20.441 0.128 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.017 3.983 12 C -0.032 4.032 13 N -0.357 5.357 14 C 0.319 3.681 15 O -0.427 6.427 16 C -0.024 4.024 17 C -0.165 4.165 18 C -0.171 4.171 19 C -0.092 4.092 20 N -0.229 5.229 21 C -0.096 4.096 22 C -0.173 4.173 23 C -0.165 4.165 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.798 -19.601 0.577 21.492 hybrid contribution 1.069 0.353 0.117 1.132 sum 9.867 -19.247 0.694 21.640 Atomic orbital electron populations 1.20836 0.82199 0.95691 0.99431 1.43926 1.02053 1.00373 1.85611 1.19231 0.98109 0.85264 1.36192 0.91251 1.25055 0.97674 0.98623 0.98170 1.70071 1.17829 1.27154 1.40062 0.86223 0.78824 0.83988 0.77304 1.21465 1.21697 1.20477 1.20973 0.96235 0.88808 0.92283 1.22477 0.95739 0.83050 1.01894 1.46041 1.57044 1.24405 1.08245 1.19892 0.79012 0.85128 0.84113 1.90689 1.55131 1.65189 1.31678 1.22430 0.94872 0.93050 0.92065 1.22830 0.99113 0.97673 0.96921 1.22784 0.99686 0.99116 0.95507 1.23286 0.99932 0.90683 0.95271 1.65278 1.27893 1.12825 1.16882 1.23342 0.89586 0.97523 0.99129 1.22836 0.99570 0.99232 0.95659 1.22844 0.93104 1.03361 0.97164 0.95277 0.93486 0.98397 0.93673 0.93488 0.93964 0.92379 0.91556 0.76628 0.88690 0.90821 0.90619 0.90473 0.92972 0.89853 0.89601 0.92912 0.90157 0.90332 0.90139 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 9.01 59.85 0.54 4.66 16 2 N -0.60 -15.30 2.93 -181.12 -0.53 -15.83 16 3 C -0.26 -7.20 9.67 -15.06 -0.15 -7.34 16 4 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.01 16 6 N -0.91 -26.96 10.58 55.49 0.59 -26.37 16 7 Si 0.91 22.18 29.57 -169.99 -5.03 17.16 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.15 3.00 5.82 -4.04 -0.02 2.98 16 12 C 0.09 1.94 6.00 -4.04 -0.02 1.92 16 13 N -0.71 -11.78 5.48 -60.29 -0.33 -12.11 16 14 C 0.53 9.08 6.68 -10.98 -0.07 9.01 16 15 O -0.55 -11.62 15.66 5.56 0.09 -11.54 16 16 C 0.07 0.85 0.91 -131.04 -0.12 0.73 16 17 C -0.13 -1.44 5.99 -24.99 -0.15 -1.59 16 18 C -0.13 -1.32 7.07 -24.62 -0.17 -1.49 16 19 C 0.04 0.33 6.72 -2.27 -0.02 0.31 16 20 N -0.50 -5.38 4.79 -214.07 -1.03 -6.40 16 21 C 0.03 0.27 6.72 -2.27 -0.02 0.25 16 22 C -0.13 -1.15 7.07 -24.62 -0.17 -1.33 16 23 C -0.13 -1.30 6.03 -24.99 -0.15 -1.45 16 24 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 25 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 26 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 27 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.05 0.92 8.03 -51.92 -0.42 0.50 16 29 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.40 5.68 7.92 -40.82 -0.32 5.36 16 33 H 0.09 1.31 6.85 -51.93 -0.36 0.95 16 34 H 0.07 0.69 7.30 -51.93 -0.38 0.31 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.40 7.08 -51.93 -0.37 0.03 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.38 7.08 -51.93 -0.37 0.01 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.95 7.85 -51.92 -0.41 0.54 16 44 H 0.08 0.68 7.30 -51.93 -0.38 0.30 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -32.40 344.17 -9.17 -41.57 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.50 Total: 1.69 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.62 Total: 6.65 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.30 Total: -60.71 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.40 -9.17 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753055376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.949 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds