Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36945 * 119.99772 * 2 1 4 4 H 1.08000 * 119.99793 * 202.34696 * 3 2 1 5 5 C 1.38807 * 119.99982 * 22.34603 * 3 2 1 6 6 N 1.31616 * 120.00015 * 11.34592 * 5 3 2 7 7 Si 1.86799 * 120.00247 * 191.34379 * 5 3 2 8 8 H 1.48495 * 109.47037 * 89.99878 * 7 5 3 9 9 H 1.48493 * 109.47466 * 210.00122 * 7 5 3 10 10 H 1.48508 * 109.46988 * 330.00332 * 7 5 3 11 11 C 1.46502 * 120.00379 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47228 * 270.00078 * 11 2 1 13 13 N 1.46505 * 109.46869 * 180.02562 * 12 11 2 14 14 C 1.34781 * 119.99526 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00134 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99451 * 179.97438 * 14 13 12 17 17 C 1.54135 * 110.74350 * 206.01104 * 16 14 13 18 18 C 1.55166 * 102.88392 * 98.16257 * 17 16 14 19 19 C 1.54833 * 101.65759 * 36.15899 * 18 17 16 20 20 N 1.47850 * 111.38144 * 325.29462 * 16 14 13 21 21 C 1.47958 * 108.37478 * 120.68962 * 20 16 14 22 22 C 1.54834 * 105.06310 * 337.18161 * 21 20 16 23 23 C 1.54134 * 110.74461 * 84.57358 * 16 14 13 24 24 H 1.08997 * 109.47153 * 274.20679 * 1 2 3 25 25 H 1.08998 * 109.47554 * 34.21134 * 1 2 3 26 26 H 1.09004 * 109.46638 * 154.20967 * 1 2 3 27 27 H 0.97001 * 120.00407 * 179.97438 * 6 5 3 28 28 H 1.09008 * 109.46822 * 149.99728 * 11 2 1 29 29 H 1.09001 * 109.46602 * 30.00230 * 11 2 1 30 30 H 1.08996 * 109.47030 * 59.99559 * 12 11 2 31 31 H 1.08998 * 109.46720 * 299.99666 * 12 11 2 32 32 H 0.96992 * 119.99886 * 359.97438 * 13 12 11 33 33 H 1.09006 * 110.73310 * 339.81897 * 17 16 14 34 34 H 1.09003 * 110.73484 * 216.51477 * 17 16 14 35 35 H 1.09002 * 110.98873 * 154.24901 * 18 17 16 36 36 H 1.08992 * 110.98843 * 278.06087 * 18 17 16 37 37 H 1.08995 * 110.32876 * 82.22908 * 19 18 17 38 38 H 1.09006 * 110.31520 * 204.43466 * 19 18 17 39 39 H 1.08999 * 110.32000 * 218.28431 * 21 20 16 40 40 H 1.08998 * 110.40649 * 96.12511 * 21 20 16 41 41 H 1.08995 * 110.98867 * 278.57953 * 22 21 20 42 42 H 1.08997 * 110.98653 * 154.76577 * 22 21 20 43 43 H 1.09010 * 110.73137 * 20.18208 * 23 16 14 44 44 H 1.08997 * 110.73385 * 143.47973 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3841 2.2690 1.0936 7 14 2.3365 4.0048 0.1688 8 1 1.8677 4.5632 -1.1249 9 1 1.9680 4.9303 1.2700 10 1 3.8122 3.8420 0.1319 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 7 3.1857 -2.9781 1.4437 14 6 3.5224 -3.5614 2.6112 15 8 3.2188 -3.0360 3.6613 16 6 4.2760 -4.8664 2.6117 17 6 4.0012 -5.6551 3.9072 18 6 2.9038 -6.6624 3.4728 19 6 3.3406 -6.9961 2.0254 20 7 3.8671 -5.7254 1.4799 21 6 5.0604 -6.0036 0.6506 22 6 6.0447 -4.8497 0.9620 23 6 5.7917 -4.6216 2.4758 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4471 27 1 -0.0461 3.0774 1.4133 28 1 3.1500 -1.1385 -0.5134 29 1 1.6085 -2.0285 -0.5130 30 1 1.5002 -1.8398 1.9571 31 1 3.0417 -0.9498 1.9567 32 1 3.4282 -3.3984 0.6039 33 1 3.6298 -4.9938 4.6901 34 1 4.8979 -6.1798 4.2371 35 1 2.9208 -7.5531 4.1009 36 1 1.9187 -6.1962 3.4858 37 1 4.1205 -7.7576 2.0312 38 1 2.4851 -7.3336 1.4402 39 1 4.7956 -6.0004 -0.4067 40 1 5.5005 -6.9617 0.9271 41 1 5.7962 -3.9584 0.3860 42 1 7.0749 -5.1556 0.7801 43 1 6.0445 -3.6000 2.7596 44 1 6.3536 -5.3394 3.0733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753055376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -29.770518 kcal Electronic energy + Delta-G solvation = -23066.349417 eV Core-core repulsion = 19825.109923 eV Total energy + Delta-G solvation = -3241.239494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.93757 -39.51290 -37.83799 -35.77783 -34.81339 -33.25249 -32.35226 -30.17420 -28.88067 -27.93072 -26.41413 -25.33915 -23.10195 -22.49164 -22.32790 -21.64846 -20.27117 -18.80405 -18.36946 -17.24701 -16.90382 -16.61340 -16.28846 -16.04351 -15.47556 -15.25288 -15.16788 -14.89173 -14.52273 -14.27133 -14.12925 -13.90607 -13.34296 -13.14435 -13.08424 -12.81542 -12.65584 -12.51709 -12.48136 -12.43197 -12.10467 -12.06524 -12.03309 -11.90712 -11.78964 -11.75360 -11.34877 -10.92559 -10.67316 -10.02340 -9.47953 -8.87512 -7.85561 -5.35614 1.46078 1.47309 1.56288 1.61025 2.23351 2.52340 2.88602 3.29857 3.45281 3.49834 3.73964 3.77448 4.01299 4.05720 4.11106 4.21351 4.22483 4.33575 4.44814 4.54241 4.62993 4.66371 4.71985 4.82894 4.84976 4.89852 4.98177 5.03813 5.06785 5.07922 5.14484 5.17003 5.22699 5.26063 5.30492 5.51932 5.61980 5.70103 5.75037 6.02230 6.29889 6.67329 7.11596 7.33353 7.81968 8.25218 9.18462 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.003843 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.831775 B = 7283.902297 C = 7451.472808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.267 4.267 4 H 0.076 0.924 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.297 1.297 10 H -0.267 1.267 11 C 0.150 3.850 12 C 0.116 3.884 13 N -0.695 5.695 14 C 0.527 3.473 15 O -0.599 6.599 16 C 0.074 3.926 17 C -0.128 4.128 18 C -0.132 4.132 19 C 0.039 3.961 20 N -0.520 5.520 21 C 0.034 3.966 22 C -0.130 4.130 23 C -0.125 4.125 24 H -0.003 1.003 25 H 0.023 0.977 26 H 0.034 0.966 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.415 0.585 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.755 -22.953 -1.466 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.337 5.337 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.208 1.208 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.023 3.977 12 C -0.011 4.011 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.480 6.480 16 C -0.019 4.019 17 C -0.167 4.167 18 C -0.170 4.170 19 C -0.088 4.088 20 N -0.245 5.245 21 C -0.093 4.093 22 C -0.168 4.168 23 C -0.164 4.164 24 H 0.016 0.984 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.252 0.748 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.998 -22.170 -1.063 24.771 hybrid contribution 0.401 1.051 0.626 1.287 sum 11.399 -21.119 -0.437 24.004 Atomic orbital electron populations 1.20590 0.82461 0.96430 0.97421 1.44180 1.02350 1.01569 1.85645 1.19614 0.98408 0.86357 1.35344 0.90582 1.25875 0.98414 1.02199 0.98424 1.70256 1.19371 1.27583 1.41513 0.85189 0.78452 0.79453 0.76893 1.20765 1.22416 1.19185 1.21087 0.97007 0.87531 0.92095 1.21902 0.94033 0.84017 1.01188 1.45816 1.56494 1.23012 1.09307 1.20904 0.78224 0.86519 0.83017 1.90662 1.57032 1.66928 1.33406 1.22278 0.95342 0.90782 0.93519 1.22857 1.00750 0.97556 0.95526 1.22785 0.97752 0.99417 0.96996 1.23340 1.00850 0.90439 0.94172 1.65188 1.29358 1.13634 1.16359 1.23428 0.88476 0.98229 0.99143 1.22849 1.01182 0.99051 0.93757 1.22881 0.91544 1.02792 0.99179 0.98436 0.95792 0.94760 0.94267 0.91795 0.91093 0.95336 0.95311 0.74793 0.91991 0.87995 0.88136 0.93154 0.90308 0.89446 0.88624 0.90716 0.91391 0.87883 0.92337 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.03 9.01 127.77 1.15 10.18 16 2 N -0.61 -31.64 2.93 -726.93 -2.13 -33.77 16 3 C -0.27 -14.96 9.67 84.03 0.81 -14.15 16 4 H 0.08 4.07 7.84 -2.91 -0.02 4.05 16 5 C -0.05 -3.12 5.13 84.86 0.44 -2.68 16 6 N -0.94 -57.70 10.58 21.65 0.23 -57.47 16 7 Si 0.97 46.10 29.57 68.60 2.03 48.12 16 8 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 C 0.15 6.06 5.82 86.38 0.50 6.57 16 12 C 0.12 4.91 6.00 86.38 0.52 5.43 16 13 N -0.70 -23.22 5.48 -463.05 -2.54 -25.75 16 14 C 0.53 18.28 6.68 87.66 0.59 18.87 16 15 O -0.60 -26.83 15.66 -3.04 -0.05 -26.87 16 16 C 0.07 1.74 0.91 3.37 0.00 1.74 16 17 C -0.13 -2.78 5.99 31.72 0.19 -2.59 16 18 C -0.13 -2.38 7.07 31.96 0.23 -2.16 16 19 C 0.04 0.58 6.72 86.72 0.58 1.17 16 20 N -0.52 -9.67 4.79 -831.20 -3.98 -13.65 16 21 C 0.03 0.43 6.72 86.73 0.58 1.01 16 22 C -0.13 -1.80 7.07 31.96 0.23 -1.58 16 23 C -0.13 -2.32 6.03 31.72 0.19 -2.13 16 24 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16 25 H 0.02 1.30 7.19 -2.39 -0.02 1.28 16 26 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.06 2.39 8.03 -2.38 -0.02 2.37 16 29 H 0.07 2.49 7.86 -2.39 -0.02 2.47 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.41 11.25 7.92 -92.71 -0.73 10.51 16 33 H 0.06 1.77 6.85 -2.38 -0.02 1.75 16 34 H 0.10 1.61 7.30 -2.39 -0.02 1.59 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 0.79 7.08 -2.39 -0.02 0.78 16 38 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.66 7.08 -2.39 -0.02 0.64 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.34 7.85 -2.38 -0.02 1.33 16 44 H 0.10 1.42 7.30 -2.39 -0.02 1.41 16 Total: -1.00 -73.74 344.17 -0.18 -73.92 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.24 Total: 15.80 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.01 Total: 19.68 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -8.41 Total: -130.64 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.74 -0.18 -73.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753055376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.149 kcal (2) G-P(sol) polarization free energy of solvation -73.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds