Wall clock time and date at job start Tue Mar 31 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00341 * 2 1 4 4 C 1.46904 * 110.99629 * 123.95472 * 2 1 3 5 5 C 1.50703 * 112.84675 * 301.33803 * 4 2 1 6 6 O 1.21277 * 120.00596 * 352.57493 * 5 4 2 7 7 N 1.34781 * 119.99606 * 172.57782 * 5 4 2 8 8 C 1.46497 * 119.99856 * 174.91709 * 7 5 4 9 9 C 1.53001 * 109.47290 * 179.97438 * 8 7 5 10 10 H 1.09002 * 112.77810 * 303.71882 * 9 8 7 11 11 C 1.53500 * 113.47042 * 172.93791 * 9 8 7 12 12 C 1.53759 * 83.25802 * 218.98067 * 11 9 8 13 13 N 1.47068 * 113.46993 * 74.49753 * 9 8 7 14 14 C 1.36935 * 136.05675 * 321.87310 * 13 9 8 15 15 H 1.07992 * 120.00013 * 5.41685 * 14 13 9 16 16 C 1.38818 * 119.99550 * 185.42412 * 14 13 9 17 17 N 1.31612 * 120.00020 * 354.97127 * 16 14 13 18 18 Si 1.86803 * 119.99484 * 174.97807 * 16 14 13 19 19 H 1.48505 * 109.46802 * 274.99627 * 18 16 14 20 20 H 1.48489 * 109.47452 * 34.99898 * 18 16 14 21 21 H 1.48504 * 109.46786 * 155.00292 * 18 16 14 22 22 C 1.53776 * 113.69441 * 72.60880 * 4 2 1 23 23 C 1.53775 * 87.08235 * 89.12366 * 22 4 2 24 24 C 1.53776 * 87.08103 * 25.43531 * 23 22 4 25 25 H 1.09003 * 109.47359 * 302.22170 * 1 2 3 26 26 H 1.09007 * 109.46947 * 62.22255 * 1 2 3 27 27 H 1.08999 * 109.47363 * 182.22090 * 1 2 3 28 28 H 1.09005 * 109.47378 * 183.94908 * 3 2 1 29 29 H 1.08999 * 109.47043 * 303.95100 * 3 2 1 30 30 H 1.09011 * 109.47161 * 63.95234 * 3 2 1 31 31 H 0.96999 * 120.00437 * 354.90855 * 7 5 4 32 32 H 1.09001 * 109.47748 * 59.99403 * 8 7 5 33 33 H 1.09007 * 109.46831 * 299.99144 * 8 7 5 34 34 H 1.09004 * 114.20531 * 332.73368 * 11 9 8 35 35 H 1.08996 * 114.20641 * 105.36627 * 11 9 8 36 36 H 1.08998 * 113.46177 * 271.50294 * 12 11 9 37 37 H 1.08992 * 113.55243 * 140.98469 * 12 11 9 38 38 H 0.97002 * 119.99848 * 180.02562 * 17 16 14 39 39 H 1.09002 * 113.61747 * 203.67651 * 22 4 2 40 40 H 1.09001 * 113.61388 * 334.57392 * 22 4 2 41 41 H 1.08997 * 113.62191 * 270.88632 * 23 22 4 42 42 H 1.09002 * 113.61431 * 139.98315 * 23 22 4 43 43 H 1.09002 * 113.61543 * 220.01623 * 24 23 22 44 44 H 1.09011 * 113.61690 * 89.11221 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.5307 -0.2318 2.4680 6 8 0.9117 0.8098 2.5205 7 7 1.8031 -0.9116 3.5994 8 6 1.4502 -0.3390 4.9009 9 6 1.8640 -1.3056 6.0124 10 1 1.4247 -2.2962 5.8954 11 6 1.6938 -0.7241 7.4228 12 6 3.0169 -1.4606 7.6896 13 7 3.3143 -1.3330 6.2549 14 6 4.4442 -1.2723 5.4837 15 1 4.3642 -1.0926 4.4219 16 6 5.6924 -1.4419 6.0669 17 7 5.7975 -1.5621 7.3733 18 14 7.2229 -1.4994 4.9974 19 1 7.4260 -2.8831 4.4979 20 1 7.0571 -0.5768 3.8459 21 1 8.4024 -1.0843 5.7985 22 6 1.8238 -2.2871 0.9907 23 6 3.1903 -2.2940 0.2855 24 6 3.5121 -1.0095 1.0673 25 1 -0.3634 0.5480 0.8694 26 1 -0.3633 0.4790 -0.9093 27 1 -0.3634 -1.0269 0.0398 28 1 3.0829 1.3431 -0.0708 29 1 1.5899 1.9162 -0.8525 30 1 1.7044 1.8723 0.9234 31 1 2.2327 -1.7800 3.5521 32 1 0.3736 -0.1741 4.9455 33 1 1.9691 0.6105 5.0328 34 1 1.7660 0.3625 7.4700 35 1 0.8405 -1.1235 7.9709 36 1 2.8815 -2.4921 8.0147 37 1 3.7044 -0.9042 8.3265 38 1 6.6698 -1.6803 7.7809 39 1 1.8205 -2.8200 1.9416 40 1 0.9960 -2.5725 0.3416 41 1 3.1263 -2.1446 -0.7923 42 1 3.8190 -3.1411 0.5597 43 1 4.0474 -0.2634 0.4800 44 1 3.9704 -1.1931 2.0392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754486100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:14 Heat of formation + Delta-G solvation = 55.926045 kcal Electronic energy + Delta-G solvation = -23688.620215 eV Core-core repulsion = 20451.096803 eV Total energy + Delta-G solvation = -3237.523412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78556 -38.47072 -37.42526 -35.30583 -33.61671 -32.25331 -28.38152 -27.94635 -27.85400 -25.96378 -25.20911 -23.51271 -23.06475 -21.79392 -20.79528 -19.40989 -18.63896 -17.43520 -16.58556 -16.16038 -15.36744 -15.24728 -14.85615 -14.67949 -14.45750 -14.00754 -13.90064 -13.57605 -13.24360 -13.04033 -12.40740 -12.13881 -11.91066 -11.79905 -11.70532 -11.60794 -11.39365 -11.27365 -11.11162 -11.00199 -10.81674 -10.66275 -10.59569 -10.22716 -10.03870 -9.88715 -9.84406 -9.30825 -8.86680 -8.56418 -8.02789 -6.93860 -5.82805 -3.14758 2.81799 3.33968 3.38716 3.41325 3.54173 3.84640 4.38750 4.56498 4.61653 4.83444 4.95100 5.12866 5.17739 5.33701 5.38550 5.51691 5.58795 5.64431 5.66477 5.70199 5.75888 5.86307 5.87309 5.92406 5.99751 6.03152 6.08013 6.14528 6.19095 6.28416 6.31706 6.37385 6.56167 6.68907 6.88775 6.99157 6.99713 7.19233 7.33750 7.53400 7.88679 7.92123 8.53841 8.97464 9.65028 10.58798 11.34710 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.006150 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.609361 B = 4551.692484 C = 5622.423620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.498 5.498 3 C 0.010 3.990 4 C 0.061 3.939 5 C 0.498 3.502 6 O -0.554 6.554 7 N -0.709 5.709 8 C 0.121 3.879 9 C 0.127 3.873 10 H 0.047 0.953 11 C -0.162 4.162 12 C 0.154 3.846 13 N -0.601 5.601 14 C -0.216 4.216 15 H 0.080 0.920 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.290 1.290 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.402 0.598 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 -0.657 -11.156 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.220 5.220 3 C -0.138 4.138 4 C -0.034 4.034 5 C 0.283 3.717 6 O -0.433 6.433 7 N -0.359 5.359 8 C -0.003 4.003 9 C 0.019 3.981 10 H 0.065 0.935 11 C -0.201 4.201 12 C 0.028 3.972 13 N -0.327 5.327 14 C -0.343 4.343 15 H 0.098 0.902 16 C -0.202 4.202 17 N -0.562 5.562 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.206 1.206 21 H -0.216 1.216 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.816 -0.123 -11.610 14.579 hybrid contribution 0.829 -0.126 0.254 0.876 sum -7.987 -0.249 -11.356 13.886 Atomic orbital electron populations 1.22498 0.87290 1.01894 1.01944 1.62329 1.08354 1.14348 1.36997 1.22532 1.00306 0.88774 1.02186 1.22447 0.98107 0.95470 0.87337 1.21455 0.79246 0.84584 0.86438 1.90573 1.41165 1.24146 1.87432 1.46093 1.61038 1.22812 1.05986 1.21791 0.98810 0.98172 0.81566 1.22412 0.87713 0.95486 0.92510 0.93546 1.23717 0.99382 1.00690 0.96295 1.22037 0.90955 0.96157 0.88050 1.45671 0.98504 1.85096 1.03383 1.18814 0.82378 1.42392 0.90751 0.90228 1.24798 0.97344 1.02186 0.95889 1.69834 1.23084 1.55117 1.08159 0.86258 0.83034 0.77829 0.79452 1.21443 1.20581 1.21629 1.22986 0.99296 0.92219 1.01510 1.22709 0.96003 0.97463 1.00041 1.23064 0.92271 0.98718 1.02095 0.92870 0.91653 0.91995 0.91741 0.91739 0.92477 0.76229 0.92421 0.91324 0.90269 0.92378 0.95612 0.91204 0.93608 0.89435 0.90378 0.89368 0.91068 0.90355 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.10 60.06 0.55 0.69 16 2 N -0.50 -6.70 4.80 -235.80 -1.13 -7.83 16 3 C 0.01 0.13 9.17 60.06 0.55 0.68 16 4 C 0.06 0.85 0.42 -131.94 -0.05 0.79 16 5 C 0.50 8.44 6.53 -10.98 -0.07 8.37 16 6 O -0.55 -10.78 12.31 5.56 0.07 -10.71 16 7 N -0.71 -12.02 5.00 -60.29 -0.30 -12.32 16 8 C 0.12 2.20 5.53 -4.04 -0.02 2.17 16 9 C 0.13 2.41 4.10 -72.39 -0.30 2.11 16 10 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 11 C -0.16 -2.92 8.04 -26.08 -0.21 -3.13 16 12 C 0.15 3.47 7.35 -8.36 -0.06 3.41 16 13 N -0.60 -14.34 3.65 -176.81 -0.64 -14.99 16 14 C -0.22 -5.65 10.54 -15.06 -0.16 -5.81 16 15 H 0.08 1.98 7.60 -52.49 -0.40 1.58 16 16 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 17 N -0.92 -26.48 11.59 55.49 0.64 -25.84 16 18 Si 0.90 21.44 29.56 -169.99 -5.02 16.42 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.12 -1.44 7.02 -25.92 -0.18 -1.62 16 23 C -0.12 -1.42 7.99 -25.92 -0.21 -1.63 16 24 C -0.12 -1.69 7.13 -25.92 -0.18 -1.87 16 25 H 0.05 0.80 6.00 -51.93 -0.31 0.49 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.72 6.93 -51.93 -0.36 0.36 16 28 H 0.06 0.83 6.64 -51.93 -0.34 0.49 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.92 5.85 -51.92 -0.30 0.62 16 31 H 0.40 6.57 6.92 -40.82 -0.28 6.29 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.76 7.25 -51.93 -0.38 1.39 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.09 1.01 6.69 -51.93 -0.35 0.67 16 40 H 0.08 0.85 7.13 -51.93 -0.37 0.48 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.05 6.68 -51.93 -0.35 0.70 16 44 H 0.10 1.47 7.86 -51.92 -0.41 1.07 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -30.26 341.90 -8.90 -39.16 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.21 Total: 7.02 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -0.45 Total: 3.94 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -1.44 Total: -60.98 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.26 -8.90 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754486100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.088 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds