Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46858 * 2 1 4 4 N 1.46496 * 109.47093 * 119.99961 * 2 1 3 5 5 C 1.46500 * 120.00332 * 299.99917 * 4 2 1 6 6 C 1.50698 * 109.47324 * 270.00032 * 5 4 2 7 7 H 1.08005 * 119.99623 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00186 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00222 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00136 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46992 * 89.99856 * 10 8 6 12 12 H 1.48493 * 109.47290 * 209.99812 * 10 8 6 13 13 H 1.48500 * 109.46982 * 330.00448 * 10 8 6 14 14 C 1.34777 * 119.99889 * 120.00128 * 4 2 1 15 15 O 1.21280 * 120.00184 * 179.97438 * 14 4 2 16 16 C 1.50699 * 119.99850 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.47339 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 1.09004 * 109.46902 * 299.99830 * 1 2 3 25 25 H 1.08991 * 109.47352 * 59.99761 * 1 2 3 26 26 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46767 * 240.00107 * 2 1 3 28 28 H 1.09005 * 109.47171 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47703 * 300.00282 * 3 2 1 30 30 H 1.09004 * 109.47225 * 60.00367 * 3 2 1 31 31 H 1.08999 * 109.46820 * 30.00359 * 5 4 2 32 32 H 1.09008 * 109.47046 * 150.00114 * 5 4 2 33 33 H 0.97000 * 120.00371 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47531 * 59.99661 * 16 14 4 35 35 H 1.09006 * 109.47449 * 300.00162 * 16 14 4 36 36 H 1.09008 * 109.47149 * 59.99835 * 17 16 14 37 37 H 1.08997 * 109.47163 * 299.99905 * 17 16 14 38 38 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 39 39 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 40 40 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 48 48 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 2.7032 0.8018 2.9830 7 1 3.5433 1.0356 2.3457 8 6 2.5813 1.4107 4.2139 9 7 3.4875 2.2767 4.6119 10 14 1.1280 1.0067 5.3159 11 1 1.4763 -0.1389 6.1943 12 1 0.7970 2.1886 6.1518 13 1 -0.0445 0.6491 4.4777 14 6 2.7933 -1.7864 1.0725 15 8 3.1979 -2.3579 2.0627 16 6 3.1568 -2.3015 -0.2963 17 6 4.0360 -3.5458 -0.1560 18 6 4.4047 -4.0692 -1.5457 19 6 5.2756 -3.0371 -2.2648 20 6 5.6448 -3.5607 -3.6542 21 6 6.4187 -4.8733 -3.5155 22 6 5.5477 -5.9053 -2.7964 23 6 5.1784 -5.3819 -1.4075 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6905 0.2973 2.4844 32 1 1.6239 -1.0227 3.2292 33 1 3.4019 2.7048 5.4781 34 1 3.7015 -1.5309 -0.8417 35 1 2.2483 -2.5586 -0.8410 36 1 3.4909 -4.3163 0.3892 37 1 4.9446 -3.2891 0.3887 38 1 3.4956 -4.2421 -2.1217 39 1 4.7245 -2.1019 -2.3632 40 1 6.1847 -2.8642 -1.6887 41 1 6.2657 -2.8256 -4.1664 42 1 4.7359 -3.7339 -4.2305 43 1 7.3275 -4.7001 -2.9393 44 1 6.6813 -5.2465 -4.5054 45 1 6.0989 -6.8405 -2.6981 46 1 4.6389 -6.0785 -3.3727 47 1 6.0874 -5.2090 -0.8315 48 1 4.5578 -6.1171 -0.8952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = -78.596043 kcal Electronic energy + Delta-G solvation = -23158.617366 eV Core-core repulsion = 20018.800981 eV Total energy + Delta-G solvation = -3139.816384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51913 -38.59076 -36.03924 -33.78061 -32.67358 -30.95496 -30.87778 -29.69377 -27.67997 -26.74544 -24.43310 -22.72335 -22.15516 -21.31531 -20.53847 -19.78494 -17.87351 -16.85428 -16.71644 -15.44246 -15.25007 -15.15340 -14.39850 -14.25885 -14.06758 -13.87701 -13.53293 -13.39098 -13.13162 -12.72191 -12.47834 -12.30751 -12.08543 -11.98464 -11.71741 -11.69399 -11.61721 -11.27363 -11.21244 -11.11823 -10.90517 -10.83516 -10.68439 -10.49636 -10.44995 -10.27333 -10.08898 -10.05692 -9.95219 -9.42385 -8.87901 -8.54154 -7.63968 -6.04397 -4.01373 3.30980 3.36973 3.39294 3.44521 3.87397 4.43041 4.56973 4.62141 4.66570 5.01010 5.07643 5.09242 5.21978 5.28981 5.30686 5.40520 5.41547 5.43618 5.48537 5.54807 5.55496 5.64873 5.65156 5.77926 5.88831 5.90926 5.97685 5.99525 6.07203 6.09681 6.11619 6.16416 6.22007 6.27567 6.32303 6.34106 6.45284 6.55121 6.58189 6.82858 7.00612 7.03422 7.44919 7.67240 8.36290 8.53121 8.99301 9.08604 9.56801 11.08918 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.003852 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.163474 B = 7266.903588 C = 7611.576610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.156 4.156 4 N -0.591 5.591 5 C 0.215 3.785 6 C -0.519 4.519 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.505 3.495 15 O -0.543 6.543 16 C -0.140 4.140 17 C -0.098 4.098 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -11.036 -17.962 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.214 4.214 4 N -0.322 5.322 5 C 0.094 3.906 6 C -0.558 4.558 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.292 3.708 15 O -0.421 6.421 16 C -0.180 4.180 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.510 -11.202 -17.267 20.589 hybrid contribution -0.695 0.072 0.685 0.979 sum -1.205 -11.130 -16.582 20.007 Atomic orbital electron populations 1.22173 0.95825 1.01696 1.02380 1.21017 0.93832 0.94343 0.87901 1.22133 1.01716 0.95382 1.02213 1.48038 1.49723 1.26745 1.07737 1.19594 0.96216 0.95060 0.79727 1.21350 1.09176 1.22321 1.02945 0.90598 1.24851 0.96058 0.94818 0.97384 1.69895 1.34672 1.28491 1.20754 0.86899 0.83516 0.78176 0.81386 1.20020 1.21190 1.19153 1.20471 0.78683 0.80619 0.90992 1.90656 1.53154 1.58320 1.39984 1.21744 1.00985 0.99238 0.95998 1.21372 1.00122 0.96326 0.95790 1.21184 0.98197 0.94791 0.96240 1.21666 1.00013 0.98314 0.95586 1.21536 0.99965 0.96818 0.97338 1.21542 0.98678 0.95570 0.99967 1.21520 0.99631 0.97970 0.96493 1.21568 1.00354 0.96708 0.96615 0.91670 0.92073 0.92923 0.90375 0.92482 0.93307 0.90129 0.95276 0.94892 0.92692 0.89380 0.89925 0.91428 0.91158 0.91430 0.91693 0.91837 0.92263 0.92205 0.92068 0.92486 0.92353 0.92221 0.91879 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.17 37.16 0.34 -1.92 16 2 C 0.13 2.12 3.17 -67.93 -0.22 1.91 16 3 C -0.16 -2.63 8.47 37.15 0.31 -2.31 16 4 N -0.59 -12.12 2.39 -167.47 -0.40 -12.52 16 5 C 0.21 5.26 3.66 -5.19 -0.02 5.24 16 6 C -0.52 -14.76 8.38 -34.44 -0.29 -15.05 16 7 H 0.08 2.36 7.87 -52.48 -0.41 1.95 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 10 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.51 10.32 7.67 -10.99 -0.08 10.24 16 15 O -0.54 -13.52 15.56 5.56 0.09 -13.43 16 16 C -0.14 -2.02 3.76 -27.89 -0.10 -2.12 16 17 C -0.10 -1.35 3.97 -26.73 -0.11 -1.45 16 18 C -0.09 -0.90 2.19 -90.62 -0.20 -1.10 16 19 C -0.12 -1.19 4.96 -26.73 -0.13 -1.33 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 22 C -0.12 -1.00 5.92 -26.76 -0.16 -1.16 16 23 C -0.11 -1.14 5.20 -26.76 -0.14 -1.27 16 24 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.02 5.76 -51.93 -0.30 0.72 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 31 H 0.03 0.69 5.48 -51.93 -0.28 0.40 16 32 H 0.03 0.88 6.85 -51.92 -0.36 0.52 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.09 1.17 6.21 -51.93 -0.32 0.85 16 35 H 0.08 1.00 7.79 -51.93 -0.40 0.60 16 36 H 0.07 0.99 8.10 -51.92 -0.42 0.57 16 37 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -32.68 362.60 -9.00 -41.68 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -9.05 Total: -0.60 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.21 Total: -10.71 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.37 Total: -39.51 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.68 -9.00 -41.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.912 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds