Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46683 * 2 1 4 4 C 1.53001 * 109.47143 * 119.99373 * 2 1 3 5 5 N 1.46501 * 109.46536 * 65.00559 * 4 2 1 6 6 C 1.46503 * 119.99772 * 269.99222 * 5 4 2 7 7 C 1.50693 * 109.47538 * 270.00548 * 6 5 4 8 8 H 1.08007 * 120.00131 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00314 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99626 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00168 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47075 * 89.99806 * 11 9 7 13 13 H 1.48497 * 109.47107 * 209.99833 * 11 9 7 14 14 H 1.48497 * 109.47299 * 330.00018 * 11 9 7 15 15 C 1.34772 * 120.00462 * 90.00224 * 5 4 2 16 16 O 1.21273 * 120.00418 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99745 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.47328 * 180.02562 * 17 15 5 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47192 * 60.00084 * 1 2 3 25 25 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47079 * 299.99818 * 1 2 3 27 27 H 1.08997 * 109.47466 * 239.99814 * 2 1 3 28 28 H 1.09003 * 109.46710 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47045 * 299.99384 * 3 2 1 30 30 H 1.08998 * 109.47214 * 60.00265 * 3 2 1 31 31 H 1.08996 * 109.47213 * 305.00784 * 4 2 1 32 32 H 1.08995 * 109.47002 * 184.99816 * 4 2 1 33 33 H 1.09000 * 109.46880 * 30.00647 * 6 5 4 34 34 H 1.09001 * 109.46924 * 150.00369 * 6 5 4 35 35 H 0.97005 * 119.99572 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47076 * 60.00853 * 17 15 5 37 37 H 1.09000 * 109.47029 * 300.00405 * 17 15 5 38 38 H 1.08995 * 109.46922 * 60.00027 * 18 17 15 39 39 H 1.09000 * 109.47141 * 300.00024 * 18 17 15 40 40 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 41 41 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 42 42 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 43 43 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 44 44 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 45 45 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 46 46 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 47 47 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 48 48 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6525 -2.1327 1.1906 6 6 0.3747 -2.5658 1.7614 7 6 0.5717 -2.9407 3.2076 8 1 1.5510 -2.8643 3.6567 9 6 -0.4980 -3.3820 3.9574 10 7 -1.6903 -3.4754 3.4104 11 14 -0.2536 -3.8473 5.7499 12 1 -0.4664 -2.6520 6.6050 13 1 -1.2277 -4.9037 6.1243 14 1 1.1278 -4.3561 5.9453 15 6 2.4716 -3.0329 0.6117 16 8 2.1510 -4.2015 0.5636 17 6 3.7859 -2.5874 0.0243 18 6 4.5165 -3.7952 -0.5659 19 6 5.8511 -3.3429 -1.1617 20 6 6.8569 -2.9669 -0.0445 21 6 8.2391 -3.1366 -0.7082 22 6 8.0500 -4.1229 -1.8739 23 6 6.5592 -4.5195 -1.8783 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 -0.3483 -1.7531 1.6919 34 1 0.0044 -3.4297 1.2094 35 1 -2.4429 -3.7856 3.9380 36 1 4.3991 -2.1376 0.8052 37 1 3.6028 -1.8544 -0.7614 38 1 3.9032 -4.2447 -1.3469 39 1 4.6995 -4.5285 0.2195 40 1 5.7037 -2.5068 -1.8453 41 1 6.7553 -3.6439 0.8037 42 1 6.7094 -1.9340 0.2709 43 1 8.9516 -3.5406 0.0110 44 1 8.5927 -2.1768 -1.0848 45 1 8.3111 -3.6416 -2.8164 46 1 8.6714 -5.0053 -1.7210 47 1 6.1939 -4.6190 -2.9004 48 1 6.4100 -5.4489 -1.3287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -81.712037 kcal Electronic energy + Delta-G solvation = -23052.916983 eV Core-core repulsion = 19912.965479 eV Total energy + Delta-G solvation = -3139.951504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34120 -38.21419 -36.30663 -33.60795 -32.89284 -32.19881 -28.89834 -28.56955 -27.15633 -26.79708 -25.36368 -23.67695 -21.91001 -20.35816 -20.18129 -19.80209 -18.14541 -16.52258 -16.17534 -15.94926 -15.50169 -15.00492 -14.67881 -14.47808 -14.12045 -13.90077 -13.37865 -13.35025 -12.97138 -12.59683 -12.40240 -12.06814 -12.02364 -11.77336 -11.49702 -11.43352 -11.31468 -11.14609 -11.05477 -10.95132 -10.88906 -10.70023 -10.63940 -10.52847 -10.51681 -10.42192 -10.27347 -10.17820 -10.07494 -9.53860 -8.76694 -8.38620 -7.55020 -6.00463 -4.04472 3.31696 3.38401 3.42463 3.55064 4.01465 4.47323 4.52757 4.58518 4.67004 5.06302 5.14493 5.17206 5.22916 5.29514 5.33499 5.40936 5.44603 5.51743 5.56709 5.59240 5.68841 5.70509 5.75441 5.83202 5.86375 5.88089 5.91935 5.99381 6.02983 6.12655 6.14080 6.20840 6.21366 6.24002 6.29389 6.33957 6.45306 6.59398 6.60725 6.72655 7.17182 7.50563 7.63788 7.96857 8.29853 8.52791 8.95768 9.20417 9.60431 11.07377 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.004507 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.636348 B = 6210.829354 C = 7381.866047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.242 3.758 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.503 3.497 16 O -0.545 6.545 17 C -0.139 4.139 18 C -0.094 4.094 19 C -0.092 4.092 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.121 4.121 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.228 7.073 -10.000 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.123 3.877 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.289 3.711 16 O -0.423 6.423 17 C -0.179 4.179 18 C -0.132 4.132 19 C -0.110 4.110 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.159 4.159 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.846 6.390 -9.965 18.988 hybrid contribution 0.034 -0.121 1.095 1.102 sum 14.881 6.269 -8.870 18.423 Atomic orbital electron populations 1.21927 0.94679 1.03067 1.00891 1.21587 0.97055 0.95738 0.98964 1.21781 1.00504 0.96084 1.01722 1.21512 0.99001 0.82495 0.97783 1.48215 1.21827 1.06290 1.56451 1.19367 0.78913 0.96266 0.93165 1.21468 0.94990 1.44197 0.95649 0.92617 1.24922 0.95091 0.95493 0.98603 1.69934 0.99803 1.47210 1.36506 0.86530 0.78036 0.78177 0.84885 1.20698 1.21124 1.19953 1.20435 0.85702 0.86098 0.78817 1.90653 1.75311 1.17603 1.58689 1.21733 0.95383 0.99686 1.01097 1.21316 0.94238 0.97003 1.00681 1.22189 0.94431 0.97701 0.96716 1.22478 0.93957 1.01421 0.98104 1.22130 0.97607 0.99104 0.97427 1.22125 0.96846 0.98903 0.98360 1.22411 0.94437 0.98602 1.00409 0.93698 0.91268 0.92559 0.91612 0.92946 0.92909 0.92526 0.90156 0.91733 0.94288 0.94204 0.92812 0.89772 0.89952 0.91384 0.91211 0.90841 0.91392 0.91743 0.92177 0.92178 0.92199 0.92185 0.91868 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.57 3.12 -90.61 -0.28 -1.85 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C 0.12 1.89 4.70 -4.04 -0.02 1.87 16 5 N -0.60 -12.56 2.28 -175.06 -0.40 -12.96 16 6 C 0.24 6.31 4.23 -5.20 -0.02 6.29 16 7 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.50 10.49 7.67 -10.99 -0.08 10.41 16 16 O -0.54 -13.89 15.56 5.56 0.09 -13.81 16 17 C -0.14 -2.06 4.15 -27.88 -0.12 -2.17 16 18 C -0.09 -1.33 4.01 -26.73 -0.11 -1.43 16 19 C -0.09 -1.00 2.86 -88.59 -0.25 -1.25 16 20 C -0.12 -1.25 5.71 -25.03 -0.14 -1.39 16 21 C -0.13 -1.11 6.80 -25.61 -0.17 -1.29 16 22 C -0.12 -1.10 6.80 -25.62 -0.17 -1.27 16 23 C -0.12 -1.22 6.27 -25.07 -0.16 -1.38 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.28 5.89 -51.93 -0.31 0.97 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 33 H 0.04 1.01 5.98 -51.93 -0.31 0.70 16 34 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.13 6.92 -51.93 -0.36 0.77 16 37 H 0.08 1.05 7.26 -51.93 -0.38 0.68 16 38 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.07 1.10 7.96 -51.93 -0.41 0.68 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 42 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -32.10 371.66 -9.46 -41.56 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -9.15 Total: -1.12 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.31 Total: -10.32 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.34 Total: -38.98 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.10 -9.46 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.155 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds