Wall clock time and date at job start Tue Mar 31 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 C 1.53007 * 109.46740 * 119.99492 * 2 1 3 5 5 N 1.46499 * 109.47093 * 65.00205 * 4 2 1 6 6 C 1.46501 * 119.99971 * 269.99998 * 5 4 2 7 7 C 1.50699 * 109.47178 * 269.99975 * 6 5 4 8 8 H 1.08000 * 119.99971 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00163 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99919 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99891 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47358 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46722 * 120.00327 * 11 9 7 14 14 H 1.48493 * 109.47210 * 240.00239 * 11 9 7 15 15 C 1.34771 * 120.00114 * 89.99755 * 5 4 2 16 16 O 1.21278 * 120.00224 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00023 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47344 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.46817 * 64.99877 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99683 * 18 17 15 24 24 H 1.09006 * 109.47333 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47608 * 300.00604 * 1 2 3 26 26 H 1.09007 * 109.46728 * 60.00605 * 1 2 3 27 27 H 1.08999 * 109.47608 * 239.99396 * 2 1 3 28 28 H 1.09004 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47211 * 299.99111 * 3 2 1 30 30 H 1.09000 * 109.47671 * 59.99637 * 3 2 1 31 31 H 1.08996 * 109.46801 * 305.00143 * 4 2 1 32 32 H 1.08999 * 109.46853 * 184.99979 * 4 2 1 33 33 H 1.09008 * 109.47157 * 29.99944 * 6 5 4 34 34 H 1.08995 * 109.47246 * 150.00065 * 6 5 4 35 35 H 0.97001 * 120.00317 * 179.97438 * 10 9 7 36 36 H 1.09008 * 109.47224 * 59.99699 * 17 15 5 37 37 H 1.08997 * 109.47214 * 299.99692 * 17 15 5 38 38 H 1.09002 * 109.47070 * 305.00057 * 18 17 15 39 39 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 40 40 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 48 48 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1908 6 6 0.3744 -2.5658 1.7614 7 6 0.5713 -2.9406 3.2077 8 1 1.5504 -2.8635 3.6570 9 6 -0.4986 -3.3809 3.9577 10 7 -1.6909 -3.4743 3.4107 11 14 -0.2543 -3.8461 5.7502 12 1 1.1705 -3.6539 6.1218 13 1 -1.1092 -2.9847 6.6061 14 1 -0.6302 -5.2690 5.9480 15 6 2.4714 -3.0330 0.6119 16 8 2.1507 -4.2016 0.5638 17 6 3.7861 -2.5877 0.0254 18 6 4.5171 -3.7957 -0.5639 19 6 3.7155 -4.3516 -1.7426 20 6 4.4467 -5.5592 -2.3324 21 6 5.8334 -5.1298 -2.8157 22 6 6.6349 -4.5740 -1.6370 23 6 5.9039 -3.3668 -1.0472 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6052 -0.2616 2.1370 32 1 3.1262 -0.6443 1.2953 33 1 -0.3486 -1.7530 1.6919 34 1 0.0041 -3.4296 1.2095 35 1 -2.4436 -3.7844 3.9381 36 1 4.3990 -2.1383 0.8068 37 1 3.6038 -1.8543 -0.7601 38 1 4.6207 -4.5660 0.2004 39 1 2.7275 -4.6571 -1.3984 40 1 3.6119 -3.5813 -2.5069 41 1 3.8759 -5.9550 -3.1724 42 1 4.5507 -6.3296 -1.5683 43 1 5.7293 -4.3594 -3.5798 44 1 6.3544 -5.9903 -3.2355 45 1 7.6229 -4.2685 -1.9813 46 1 6.7389 -5.3444 -0.8729 47 1 5.8002 -2.5967 -1.8114 48 1 6.4749 -2.9709 -0.2074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151446.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:26 Heat of formation + Delta-G solvation = -99.509610 kcal Electronic energy + Delta-G solvation = -23547.141237 eV Core-core repulsion = 20406.417972 eV Total energy + Delta-G solvation = -3140.723265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07545 -39.15853 -37.66837 -35.38447 -34.09733 -33.51934 -31.52810 -30.09032 -27.97599 -27.83634 -26.77090 -24.65940 -23.43097 -22.32214 -21.35681 -20.54742 -19.69120 -18.65570 -17.65446 -17.21800 -16.42755 -16.25050 -16.09889 -15.58950 -15.21000 -14.92521 -14.82326 -14.59182 -14.24618 -14.19780 -13.65826 -13.50999 -13.20683 -13.08669 -12.98050 -12.87783 -12.81292 -12.68150 -12.60566 -12.38531 -12.15060 -12.07424 -11.91235 -11.86185 -11.75220 -11.50233 -11.49060 -11.27468 -11.05992 -10.85051 -10.62715 -10.29252 -9.30503 -8.21475 -6.36065 1.33756 1.36282 1.47935 1.94473 2.33083 2.51088 3.07269 3.71838 3.77876 3.88774 3.95208 4.06988 4.07182 4.23177 4.32273 4.38472 4.52183 4.57087 4.61427 4.69432 4.71376 4.71883 4.80906 4.84637 4.87794 4.91141 4.95835 5.04476 5.07374 5.12113 5.17007 5.23234 5.26158 5.30206 5.31439 5.36083 5.39127 5.45467 5.47740 5.52316 5.59735 5.64599 5.68005 5.93199 6.10855 6.72802 6.89730 7.30313 7.60138 8.84967 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.005185 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.198347 B = 5398.465431 C = 6624.152154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.111 3.889 5 N -0.602 5.602 6 C 0.262 3.738 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.283 1.283 15 C 0.492 3.508 16 O -0.593 6.593 17 C -0.123 4.123 18 C -0.068 4.068 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.106 4.106 24 H 0.027 0.973 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.032 0.968 34 H -0.012 1.012 35 H 0.266 0.734 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.078 0.922 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 8.069 -11.405 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.332 5.332 6 C 0.140 3.860 7 C -0.580 4.580 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.193 1.193 14 H -0.209 1.209 15 C 0.281 3.719 16 O -0.475 6.475 17 C -0.162 4.162 18 C -0.087 4.087 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.143 4.143 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.627 7.442 -11.378 20.713 hybrid contribution -0.987 -0.830 1.241 1.789 sum 14.640 6.612 -10.138 18.995 Atomic orbital electron populations 1.21895 0.96472 1.00495 1.01597 1.21526 0.95438 0.97850 0.97703 1.21725 1.01895 0.93267 1.02418 1.21834 1.01056 0.79661 0.98635 1.48235 1.20206 1.08664 1.56101 1.18773 0.81447 0.94026 0.91713 1.21789 0.94796 1.44481 0.96890 0.93197 1.25831 0.94721 0.95232 1.03342 1.70059 1.00659 1.47837 1.38317 0.85409 0.78475 0.77890 0.79282 1.19192 1.19343 1.20864 1.21491 0.87159 0.85298 0.77905 1.90602 1.76677 1.19945 1.60247 1.21817 0.92041 1.00297 1.02081 1.20868 0.95498 0.95563 0.96782 1.21617 0.98712 0.98116 0.97036 1.21500 0.97124 0.97216 0.99679 1.21524 0.94455 1.01073 0.98022 1.21528 0.99070 0.97492 0.97543 1.21549 0.93337 0.98318 1.01117 0.95406 0.93355 0.91478 0.91007 0.90664 0.91511 0.92612 0.91546 0.88248 0.94977 0.99373 0.92525 0.87411 0.86941 0.93775 0.94194 0.91541 0.92207 0.93843 0.91039 0.91369 0.90056 0.93171 0.90287 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 8.18 71.98 0.59 -3.96 16 2 C -0.11 -2.71 3.12 -10.79 -0.03 -2.75 16 3 C -0.14 -2.42 9.19 71.98 0.66 -1.76 16 4 C 0.11 3.46 4.70 86.38 0.41 3.86 16 5 N -0.60 -25.83 2.28 -826.16 -1.88 -27.71 16 6 C 0.26 14.41 4.23 85.63 0.36 14.77 16 7 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 8 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 11 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 C 0.49 20.72 7.39 87.66 0.65 21.37 16 16 O -0.59 -31.27 13.55 -3.02 -0.04 -31.31 16 17 C -0.12 -3.43 3.73 29.85 0.11 -3.32 16 18 C -0.07 -1.87 1.84 -10.79 -0.02 -1.89 16 19 C -0.12 -3.43 4.94 30.59 0.15 -3.28 16 20 C -0.12 -2.94 5.92 30.60 0.18 -2.76 16 21 C -0.11 -2.08 5.92 30.60 0.18 -1.90 16 22 C -0.12 -2.10 5.92 30.58 0.18 -1.92 16 23 C -0.11 -1.97 5.20 30.58 0.16 -1.82 16 24 H 0.03 1.07 5.89 -2.38 -0.01 1.05 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.07 1.78 7.30 -2.39 -0.02 1.76 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 32 H 0.10 2.40 6.44 -2.39 -0.02 2.39 16 33 H 0.03 1.79 5.98 -2.38 -0.01 1.77 16 34 H -0.01 -0.77 7.42 -2.39 -0.02 -0.78 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.11 2.52 7.40 -2.38 -0.02 2.50 16 37 H 0.11 2.51 7.26 -2.39 -0.02 2.49 16 38 H 0.04 1.49 7.95 -2.39 -0.02 1.47 16 39 H 0.04 1.54 5.95 -2.39 -0.01 1.53 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -74.44 364.90 5.56 -68.88 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.89 Total: 15.42 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.28 Total: -16.20 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.60 Total: -84.83 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.04 Total: -31.31 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -74.44 5.56 -68.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151446.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.630 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds