Wall clock time and date at job start Tue Mar 31 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47347 * 2 1 4 4 C 1.52995 * 109.47340 * 120.00499 * 2 1 3 5 5 N 1.46503 * 109.47234 * 64.99483 * 4 2 1 6 6 C 1.46491 * 120.00202 * 264.35245 * 5 4 2 7 7 C 1.50702 * 109.47267 * 269.99933 * 6 5 4 8 8 H 1.07996 * 120.00124 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99787 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47177 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47195 * 119.99485 * 11 9 7 14 14 H 1.48497 * 109.47494 * 239.99549 * 11 9 7 15 15 C 1.34779 * 119.99696 * 84.35608 * 5 4 2 16 16 O 1.21281 * 120.00154 * 185.14585 * 15 5 4 17 17 C 1.50706 * 120.00221 * 5.13593 * 15 5 4 18 18 C 1.50474 * 109.62471 * 86.41596 * 17 15 5 19 19 C 1.54059 * 112.50004 * 213.85651 * 18 17 15 20 20 C 1.54064 * 112.82043 * 318.28652 * 19 18 17 21 21 C 1.50475 * 112.49580 * 318.28171 * 20 19 18 22 22 C 1.54244 * 108.51000 * 94.15398 * 21 20 19 23 23 C 1.45542 * 112.40866 * 279.99965 * 22 21 20 24 24 H 1.09000 * 109.47084 * 299.99833 * 1 2 3 25 25 H 1.09001 * 109.47233 * 59.99710 * 1 2 3 26 26 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47084 * 240.00167 * 2 1 3 28 28 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47191 * 300.00315 * 3 2 1 30 30 H 1.09000 * 109.46893 * 60.00050 * 3 2 1 31 31 H 1.09000 * 109.46929 * 304.99492 * 4 2 1 32 32 H 1.08999 * 109.47488 * 184.99644 * 4 2 1 33 33 H 1.09004 * 109.47226 * 30.00221 * 6 5 4 34 34 H 1.08998 * 109.47422 * 150.00033 * 6 5 4 35 35 H 0.96997 * 119.99758 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.78414 * 325.93938 * 17 15 5 37 37 H 1.08999 * 108.87549 * 334.64174 * 18 17 15 38 38 H 1.09004 * 108.87299 * 93.18171 * 18 17 15 39 39 H 1.09004 * 108.81936 * 197.42436 * 19 18 17 40 40 H 1.09008 * 108.81272 * 79.14705 * 19 18 17 41 41 H 1.09000 * 108.88273 * 197.50718 * 20 19 18 42 42 H 1.08996 * 108.87551 * 79.06026 * 20 19 18 43 43 H 1.08991 * 109.63342 * 213.85996 * 21 20 19 44 44 H 1.08997 * 109.63136 * 334.25483 * 21 20 19 45 45 H 1.08994 * 108.89720 * 40.75818 * 22 21 20 46 46 H 1.09002 * 108.89079 * 159.24921 * 22 21 20 47 47 H 1.09003 * 108.89030 * 182.69196 * 23 22 21 48 48 H 1.09000 * 108.89737 * 301.28145 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6523 -2.1329 1.1904 6 6 0.4356 -2.5872 1.8681 7 6 0.7701 -2.9985 3.2788 8 1 1.7873 -2.9288 3.6348 9 6 -0.2224 -3.4646 4.1147 10 7 -1.4611 -3.5499 3.6810 11 14 0.1923 -3.9750 5.8631 12 1 1.6453 -3.7840 6.1031 13 1 -0.5804 -3.1413 6.8187 14 1 -0.1583 -5.4048 6.0578 15 6 2.4152 -3.0136 0.5129 16 8 2.0472 -4.1621 0.3851 17 6 3.7254 -2.5711 -0.0860 18 6 4.8166 -2.6873 0.9436 19 6 5.8862 -1.5884 0.7956 20 6 6.2654 -1.3175 -0.6729 21 6 6.3984 -2.5831 -1.4760 22 6 5.0522 -2.8635 -2.1746 23 6 4.0811 -3.4782 -1.2817 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6445 1.2950 33 1 -0.2929 -1.7767 1.8889 34 1 0.0169 -3.4384 1.3312 35 1 -2.1593 -3.8776 4.2692 36 1 3.6472 -1.5370 -0.4215 37 1 4.3732 -2.6165 1.9368 38 1 5.2964 -3.6606 0.8406 39 1 6.7806 -1.8928 1.3392 40 1 5.5064 -0.6665 1.2363 41 1 7.2144 -0.7819 -0.6991 42 1 5.4967 -0.6915 -1.1259 43 1 7.1810 -2.4611 -2.2247 44 1 6.6505 -3.4118 -0.8144 45 1 4.6446 -1.9233 -2.5459 46 1 5.2252 -3.5293 -3.0201 47 1 3.1723 -3.6943 -1.8435 48 1 4.4925 -4.4139 -0.9031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053714591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:25 Heat of formation + Delta-G solvation = -75.204758 kcal Electronic energy + Delta-G solvation = -24226.469917 eV Core-core repulsion = 21086.800590 eV Total energy + Delta-G solvation = -3139.669327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00161 -37.76703 -36.25233 -33.56452 -32.53821 -32.24765 -31.84327 -27.80629 -26.83873 -25.71418 -24.93970 -24.49033 -22.71732 -20.58509 -20.12754 -19.47909 -18.15157 -16.47065 -16.38298 -15.70434 -15.01108 -14.95853 -14.54507 -14.39464 -14.22193 -13.79004 -13.55707 -13.19482 -13.01436 -12.76124 -12.39392 -12.17823 -12.10629 -12.02863 -11.78689 -11.56687 -11.28377 -11.04777 -10.94793 -10.89686 -10.69712 -10.68458 -10.54636 -10.47808 -10.41195 -10.28450 -10.18497 -10.10135 -10.01624 -9.53712 -8.67758 -8.40276 -7.54418 -6.01529 -4.05873 3.30484 3.37970 3.41316 3.52673 4.00490 4.46378 4.67051 4.75412 4.86829 5.05846 5.11956 5.19051 5.24909 5.26687 5.31738 5.33146 5.40524 5.44501 5.54324 5.69701 5.73868 5.80063 5.86534 5.89900 5.97594 6.06463 6.09523 6.11533 6.17345 6.19878 6.21076 6.25655 6.29479 6.32498 6.35018 6.45454 6.49436 6.55943 6.61772 6.70353 7.16748 7.51266 7.64114 7.96268 8.28538 8.53226 8.94896 9.20424 9.59406 11.06316 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.005756 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.920952 B = 4863.189586 C = 5582.265728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.243 3.757 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.511 3.489 16 O -0.545 6.545 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.100 4.100 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 8.986 -9.779 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.124 3.876 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.298 3.702 16 O -0.423 6.423 17 C -0.125 4.125 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.727 8.319 -9.762 18.069 hybrid contribution 0.068 -0.217 1.119 1.142 sum 12.795 8.102 -8.643 17.437 Atomic orbital electron populations 1.21854 0.94696 1.02843 1.00906 1.21614 0.97036 0.95815 0.98995 1.21777 1.00540 0.96034 1.01733 1.21532 0.99136 0.82457 0.97729 1.48163 1.26755 1.06715 1.50904 1.19326 0.80725 0.96014 0.91518 1.21502 0.94695 1.43226 0.96886 0.92548 1.24925 0.94915 0.95551 0.98707 1.69946 1.00382 1.46826 1.36229 0.86484 0.78405 0.78345 0.84434 1.19849 1.21003 1.20918 1.20349 0.85301 0.85764 0.78786 1.90642 1.72820 1.18947 1.59868 1.21120 0.93626 1.01112 0.96683 1.21235 0.94947 0.99440 0.98987 1.21909 0.98315 0.98762 0.96170 1.21346 1.00961 0.97754 0.95506 1.21353 0.96992 0.98382 0.98878 1.20501 0.95348 1.01001 0.98335 1.20275 0.99262 0.98570 0.95663 0.92575 0.93642 0.91581 0.91591 0.92925 0.92885 0.92505 0.90063 0.91694 0.94645 0.94059 0.92849 0.89285 0.91439 0.91584 0.92249 0.92197 0.92643 0.92090 0.92362 0.91527 0.92357 0.92348 0.91774 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.33 37.15 0.31 -1.91 16 2 C -0.11 -1.60 2.83 -90.63 -0.26 -1.85 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C 0.12 1.90 4.46 -4.04 -0.02 1.88 16 5 N -0.59 -12.53 2.19 -175.06 -0.38 -12.91 16 6 C 0.24 6.35 4.28 -5.20 -0.02 6.33 16 7 C -0.52 -14.89 9.39 -34.44 -0.32 -15.22 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 11 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.51 10.74 6.39 -10.98 -0.07 10.67 16 16 O -0.55 -13.96 15.73 5.56 0.09 -13.87 16 17 C -0.10 -1.59 1.36 -92.38 -0.13 -1.72 16 18 C -0.11 -1.53 4.34 -27.44 -0.12 -1.65 16 19 C -0.11 -1.24 5.85 -25.62 -0.15 -1.39 16 20 C -0.12 -1.13 5.31 -27.44 -0.15 -1.27 16 21 C -0.12 -1.16 5.60 -27.34 -0.15 -1.31 16 22 C -0.11 -1.25 5.26 -29.60 -0.16 -1.40 16 23 C -0.10 -1.42 4.17 -29.60 -0.12 -1.54 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.20 6.33 -51.93 -0.33 0.88 16 27 H 0.07 0.92 7.23 -51.93 -0.38 0.55 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 32 H 0.06 0.93 6.20 -51.93 -0.32 0.61 16 33 H 0.04 0.93 6.63 -51.93 -0.34 0.58 16 34 H 0.04 1.23 7.36 -51.93 -0.38 0.85 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.09 1.21 4.48 -51.93 -0.23 0.98 16 37 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 38 H 0.07 0.94 6.63 -51.93 -0.34 0.60 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.63 8.07 -51.92 -0.42 0.21 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.69 6.99 -51.93 -0.36 0.33 16 45 H 0.06 0.60 7.47 -51.93 -0.39 0.22 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.01 7.81 -51.93 -0.41 0.60 16 48 H 0.07 0.99 7.47 -51.93 -0.39 0.60 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -31.84 358.71 -9.09 -40.93 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.80 Total: -0.60 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.11 Total: -9.96 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.84 -9.09 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053714591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.276 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds