Wall clock time and date at job start Tue Mar 31 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47185 * 2 1 4 4 H 1.08991 * 109.47588 * 178.04796 * 3 2 1 5 5 C 1.53006 * 109.47224 * 298.04780 * 3 2 1 6 6 C 1.53001 * 109.47229 * 294.17461 * 5 3 2 7 7 C 1.52999 * 109.47246 * 173.92825 * 6 5 3 8 8 C 1.52997 * 109.47021 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47244 * 300.00621 * 8 7 6 10 10 C 1.52992 * 109.47416 * 59.99936 * 9 8 7 11 11 C 1.53001 * 109.47191 * 299.99953 * 10 9 8 12 12 C 1.50697 * 109.47211 * 58.04226 * 3 2 1 13 13 O 1.21278 * 120.00500 * 258.70051 * 12 3 2 14 14 N 1.34780 * 119.99831 * 78.69791 * 12 3 2 15 15 C 1.46502 * 119.99838 * 3.53826 * 14 12 3 16 16 C 1.46494 * 120.00433 * 183.53635 * 14 12 3 17 17 C 1.50697 * 109.47137 * 90.00049 * 16 14 12 18 18 H 1.08001 * 120.00156 * 0.02562 * 17 16 14 19 19 C 1.37886 * 120.00095 * 179.97438 * 17 16 14 20 20 N 1.31518 * 119.99615 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99965 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47577 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47247 * 120.00527 * 21 19 17 24 24 H 1.48501 * 109.46962 * 240.00177 * 21 19 17 25 25 H 1.08995 * 109.46843 * 65.15214 * 1 2 3 26 26 H 1.08998 * 109.46994 * 185.14959 * 1 2 3 27 27 H 1.08999 * 109.47192 * 305.15084 * 1 2 3 28 28 H 1.09001 * 109.47216 * 240.00027 * 2 1 3 29 29 H 1.08996 * 109.47105 * 119.99666 * 2 1 3 30 30 H 1.08995 * 109.47318 * 174.17225 * 5 3 2 31 31 H 1.09010 * 109.46722 * 54.17054 * 5 3 2 32 32 H 1.09002 * 109.46787 * 53.93133 * 6 5 3 33 33 H 1.09003 * 109.46882 * 59.99882 * 7 6 5 34 34 H 1.08995 * 109.47232 * 300.00462 * 7 6 5 35 35 H 1.09003 * 109.47160 * 60.00333 * 8 7 6 36 36 H 1.09001 * 109.47301 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.47039 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.46472 * 299.99567 * 9 8 7 39 39 H 1.08996 * 109.47465 * 180.02562 * 10 9 8 40 40 H 1.08997 * 109.47696 * 59.99780 * 10 9 8 41 41 H 1.09003 * 109.47277 * 300.00158 * 11 10 9 42 42 H 1.09001 * 109.47526 * 180.02562 * 11 10 9 43 43 H 1.08995 * 109.47346 * 84.65647 * 15 14 12 44 44 H 1.09005 * 109.47404 * 204.65859 * 15 14 12 45 45 H 1.09001 * 109.47063 * 324.66055 * 15 14 12 46 46 H 1.09002 * 109.47511 * 210.00261 * 16 14 12 47 47 H 1.08996 * 109.46975 * 329.99914 * 16 14 12 48 48 H 0.96997 * 119.99692 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4428 0.0350 5 6 1.5706 2.1495 -1.2731 6 6 2.2362 1.5038 -2.4901 7 6 1.6543 2.1074 -3.7699 8 6 2.3203 1.4622 -4.9868 9 6 3.8276 1.7208 -4.9402 10 6 4.4094 1.1171 -3.6605 11 6 3.7434 1.7624 -2.4435 12 6 1.4985 2.1668 1.2054 13 8 0.5557 2.9204 1.0873 14 7 2.0620 1.9771 2.4150 15 6 3.2485 1.1276 2.5452 16 6 1.4881 2.6202 3.5995 17 6 0.4582 1.7093 4.2164 18 1 0.2520 0.7473 3.7709 19 6 -0.2203 2.1035 5.3502 20 7 0.0312 3.2748 5.8929 21 14 -1.4964 0.9741 6.1151 22 1 -1.5918 -0.2760 5.3192 23 1 -1.0962 0.6461 7.5070 24 1 -2.8162 1.6547 6.1269 25 1 -0.3633 0.4318 -0.9325 26 1 -0.3633 -1.0235 0.0922 27 1 -0.3633 0.5917 0.8402 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8446 3.2033 -1.2256 31 1 0.4878 2.0591 -1.3606 32 1 2.0509 0.4297 -2.4782 33 1 1.8394 3.1816 -3.7817 34 1 0.5804 1.9236 -3.8027 35 1 2.1355 0.3880 -4.9751 36 1 1.9061 1.8926 -5.8985 37 1 4.3020 1.2615 -5.8074 38 1 4.0123 2.7950 -4.9519 39 1 5.4831 1.3018 -3.6271 40 1 4.2246 0.0430 -3.6487 41 1 3.9282 2.8366 -2.4552 42 1 4.1582 1.3326 -1.5318 43 1 4.1413 1.7153 2.3316 44 1 3.3056 0.7363 3.5610 45 1 3.1815 0.2993 1.8399 46 1 2.2780 2.8187 4.3239 47 1 1.0161 3.5591 3.3104 48 1 -0.4464 3.5523 6.6903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072568835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:37 Heat of formation + Delta-G solvation = -80.565791 kcal Electronic energy + Delta-G solvation = -23506.476912 eV Core-core repulsion = 20366.575113 eV Total energy + Delta-G solvation = -3139.901799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83251 -38.43909 -35.24512 -34.67695 -32.54752 -31.61601 -30.85769 -28.53816 -27.47920 -25.75945 -24.79337 -23.04976 -22.60713 -21.98915 -20.30222 -19.45821 -17.84982 -16.50219 -16.30578 -15.64366 -15.17065 -15.00813 -14.82176 -14.31140 -14.19742 -14.02435 -13.68284 -13.26356 -12.89934 -12.65483 -12.27665 -12.18107 -12.06418 -12.01793 -11.80764 -11.74346 -11.53844 -11.24803 -11.19402 -11.15841 -10.86626 -10.85080 -10.56580 -10.53119 -10.39988 -10.26111 -10.14101 -10.03526 -9.84374 -9.57051 -8.66981 -8.41652 -7.55487 -6.02017 -4.06565 3.30424 3.37810 3.41387 3.54645 4.04417 4.45916 4.58898 4.61441 4.67923 5.00439 5.02792 5.12802 5.20840 5.27405 5.31906 5.36027 5.43139 5.44980 5.46527 5.55760 5.65245 5.67453 5.71603 5.84777 5.89898 5.91008 5.95617 5.97967 6.02871 6.06261 6.13384 6.17271 6.19008 6.23313 6.25119 6.30940 6.44765 6.54008 6.59398 6.74833 7.12640 7.49900 7.61780 7.95388 8.27140 8.51616 8.94400 9.19959 9.58724 11.06006 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031586 B = 0.003789 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.256431 B = 7388.982311 C = 7603.750735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.109 4.109 4 H 0.085 0.915 5 C -0.096 4.096 6 C -0.087 4.087 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.117 4.117 12 C 0.512 3.488 13 O -0.543 6.543 14 N -0.604 5.604 15 C 0.081 3.919 16 C 0.244 3.756 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.043 0.957 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -6.386 -18.757 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.131 4.131 4 H 0.103 0.897 5 C -0.133 4.133 6 C -0.106 4.106 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.156 4.156 11 C -0.155 4.155 12 C 0.299 3.701 13 O -0.421 6.421 14 N -0.336 5.336 15 C -0.063 4.063 16 C 0.125 3.875 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.512 -5.857 -18.631 21.304 hybrid contribution -0.606 -0.624 0.675 1.101 sum 7.906 -6.481 -17.956 20.662 Atomic orbital electron populations 1.21853 0.95265 1.01326 1.02942 1.21488 0.97030 0.94425 1.01909 1.21424 1.01003 0.96263 0.94376 0.89716 1.21463 1.01256 0.99153 0.91477 1.21227 0.94678 1.00380 0.94268 1.21574 0.99569 1.00127 0.93934 1.21529 0.95366 1.00750 0.97972 1.21534 0.95775 1.00888 0.97498 1.21530 0.99255 1.00036 0.94816 1.21660 0.95216 1.00891 0.97691 1.20292 0.83469 0.82270 0.84086 1.90643 1.28193 1.37941 1.85328 1.48133 1.28437 1.48252 1.08762 1.21700 0.87592 0.94129 1.02908 1.19270 0.93525 0.94102 0.80640 1.21482 1.21343 1.03207 1.10181 0.92432 1.24947 0.97062 0.95285 0.96905 1.69948 1.42254 1.19606 1.21614 0.86464 0.81463 0.80781 0.78850 1.19799 1.20995 1.20898 0.92629 0.93263 0.91311 0.91438 0.91526 0.91841 0.90666 0.90939 0.92035 0.92002 0.92176 0.92387 0.92513 0.92153 0.92351 0.92165 0.92046 0.91757 0.94043 0.90814 0.92282 0.95235 0.93880 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.30 37.16 0.35 -2.08 16 2 C -0.11 -1.52 5.29 -26.73 -0.14 -1.66 16 3 C -0.11 -1.64 1.55 -91.77 -0.14 -1.78 16 4 H 0.08 1.11 5.43 -51.93 -0.28 0.83 16 5 C -0.10 -1.33 3.32 -26.73 -0.09 -1.42 16 6 C -0.09 -0.92 2.07 -90.62 -0.19 -1.11 16 7 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 8 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 9 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 10 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 11 C -0.12 -1.14 4.98 -26.73 -0.13 -1.28 16 12 C 0.51 10.69 5.57 -10.99 -0.06 10.63 16 13 O -0.54 -13.70 15.32 5.56 0.09 -13.61 16 14 N -0.60 -13.02 2.86 -182.96 -0.52 -13.54 16 15 C 0.08 1.32 9.82 59.85 0.59 1.90 16 16 C 0.24 6.50 5.16 -5.20 -0.03 6.48 16 17 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.73 5.46 -17.81 -0.10 1.63 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.05 0.79 6.62 -51.93 -0.34 0.45 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.36 6.71 -51.93 -0.35 1.01 16 28 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 29 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.15 6.25 -51.92 -0.32 0.83 16 32 H 0.07 0.75 6.30 -51.93 -0.33 0.43 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.63 6.48 -51.93 -0.34 0.29 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 45 H 0.06 0.81 4.95 -51.93 -0.26 0.55 16 46 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 47 H 0.04 1.30 7.38 -51.93 -0.38 0.92 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -32.18 359.96 -8.90 -41.08 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.72 Total: -1.52 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.88 Total: -8.67 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.21 Total: -39.72 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.18 -8.90 -41.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072568835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.489 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds