Wall clock time and date at job start Tue Mar 31 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47497 * 2 1 4 4 H 1.09000 * 109.46763 * 304.79304 * 3 2 1 5 5 C 1.52997 * 109.47446 * 184.79306 * 3 2 1 6 6 C 1.52998 * 109.47252 * 66.33643 * 5 3 2 7 7 C 1.52996 * 109.47140 * 185.35169 * 6 5 3 8 8 C 1.53006 * 109.46970 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47136 * 60.00423 * 8 7 6 10 10 C 1.53001 * 109.47160 * 299.99789 * 9 8 7 11 11 C 1.53003 * 109.46984 * 65.35530 * 6 5 3 12 12 C 1.50699 * 109.47343 * 64.78915 * 3 2 1 13 13 O 1.21287 * 119.99767 * 30.60259 * 12 3 2 14 14 N 1.34776 * 120.00473 * 210.59949 * 12 3 2 15 15 C 1.46506 * 119.99645 * 4.51094 * 14 12 3 16 16 C 1.46496 * 120.00285 * 184.78893 * 14 12 3 17 17 C 1.50706 * 109.46974 * 269.72578 * 16 14 12 18 18 H 1.07995 * 119.99794 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99680 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00263 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46985 * 119.99557 * 21 19 17 24 24 H 1.48499 * 109.47074 * 239.99802 * 21 19 17 25 25 H 1.08997 * 109.47573 * 184.24743 * 1 2 3 26 26 H 1.09000 * 109.47732 * 304.25478 * 1 2 3 27 27 H 1.09001 * 109.47261 * 64.24956 * 1 2 3 28 28 H 1.09000 * 109.47240 * 239.99366 * 2 1 3 29 29 H 1.09004 * 109.46811 * 119.99890 * 2 1 3 30 30 H 1.09005 * 109.47273 * 186.33999 * 5 3 2 31 31 H 1.09001 * 109.46899 * 306.33764 * 5 3 2 32 32 H 1.08999 * 109.46983 * 305.35511 * 6 5 3 33 33 H 1.08999 * 109.47462 * 300.00049 * 7 6 5 34 34 H 1.09007 * 109.47292 * 60.00551 * 7 6 5 35 35 H 1.08994 * 109.47504 * 300.00062 * 8 7 6 36 36 H 1.09000 * 109.46995 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47248 * 179.97438 * 9 8 7 38 38 H 1.09005 * 109.47607 * 59.99789 * 9 8 7 39 39 H 1.08999 * 109.47194 * 300.00146 * 10 9 8 40 40 H 1.08997 * 109.47547 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.47020 * 299.99905 * 11 6 5 42 42 H 1.08999 * 109.47276 * 60.00160 * 11 6 5 43 43 H 1.08991 * 109.47482 * 275.68744 * 15 14 12 44 44 H 1.09000 * 109.46923 * 35.68767 * 15 14 12 45 45 H 1.08999 * 109.46742 * 155.68418 * 15 14 12 46 46 H 1.08995 * 109.47061 * 29.72472 * 16 14 12 47 47 H 1.09001 * 109.47081 * 149.72547 * 16 14 12 48 48 H 0.96998 * 119.99733 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6082 1.9804 -0.8440 5 6 3.5652 1.4441 -0.1205 6 6 3.9689 0.9027 -1.4934 7 6 5.4922 0.7789 -1.5650 8 6 5.8958 0.2369 -2.9377 9 6 5.4104 1.1950 -4.0272 10 6 3.8871 1.3189 -3.9557 11 6 3.4835 1.8614 -2.5825 12 6 1.6369 2.1178 1.2855 13 8 1.5256 1.4675 2.3032 14 7 1.4001 3.4445 1.3043 15 6 1.4378 4.2130 0.0575 16 6 1.1112 4.1191 2.5721 17 6 -0.3757 4.1114 2.8177 18 1 -1.0390 3.6505 2.1009 19 6 -0.8892 4.6938 3.9572 20 7 -0.0815 5.2555 4.8299 21 14 -2.7323 4.6849 4.2612 22 1 -3.4162 3.9964 3.1371 23 1 -3.0212 3.9691 5.5298 24 1 -3.2248 6.0825 4.3582 25 1 -0.3634 -1.0248 0.0761 26 1 -0.3634 0.5784 0.8494 27 1 -0.3634 0.4465 -0.9256 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.9375 2.4623 -0.0076 31 1 3.9919 0.8127 0.6588 32 1 3.5172 -0.0777 -1.6445 33 1 5.9440 1.7593 -1.4138 34 1 5.8381 0.0959 -0.7891 35 1 5.4442 -0.7435 -3.0884 36 1 6.9810 0.1483 -2.9886 37 1 5.6983 0.8092 -5.0051 38 1 5.8621 2.1756 -3.8766 39 1 3.4353 0.3385 -4.1064 40 1 3.5411 2.0019 -4.7315 41 1 2.3982 1.9496 -2.5315 42 1 3.9352 2.8418 -2.4314 43 1 2.4669 4.4948 -0.1647 44 1 1.0439 3.6044 -0.7564 45 1 0.8304 5.1115 0.1662 46 1 1.6163 3.5972 3.3848 47 1 1.4664 5.1486 2.5252 48 1 -0.4428 5.6648 5.6316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072568837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:38 Heat of formation + Delta-G solvation = -81.847994 kcal Electronic energy + Delta-G solvation = -23471.002673 eV Core-core repulsion = 20331.045274 eV Total energy + Delta-G solvation = -3139.957400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77582 -38.44897 -35.18376 -34.59500 -32.52301 -31.88817 -30.86868 -28.78685 -27.54785 -25.71542 -24.37212 -23.09603 -22.70001 -21.72724 -20.55425 -19.59057 -18.00703 -16.69563 -16.42578 -15.53619 -15.13840 -14.90304 -14.51237 -14.33033 -14.14615 -13.98898 -13.60546 -13.48840 -12.93673 -12.71972 -12.47350 -12.24060 -12.14004 -12.00667 -11.84786 -11.77377 -11.42189 -11.27012 -11.23971 -11.16297 -10.91841 -10.81385 -10.68227 -10.58255 -10.35549 -10.27186 -10.14207 -10.06842 -9.93295 -9.56001 -8.66208 -8.40886 -7.56383 -6.01172 -4.05380 3.31373 3.38690 3.42613 3.53172 4.03829 4.47519 4.54851 4.59061 4.63962 4.93445 5.02408 5.11284 5.15373 5.31127 5.31967 5.32789 5.40137 5.43237 5.47342 5.49887 5.54416 5.65849 5.76568 5.84341 5.85489 5.88937 5.94446 5.95995 6.01152 6.03141 6.04720 6.14183 6.17378 6.20860 6.26705 6.28764 6.34577 6.48868 6.58319 6.64718 7.11721 7.47829 7.61667 7.95902 8.27854 8.51187 8.95442 9.20484 9.59783 11.06904 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.003848 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.229765 B = 7274.259942 C = 7486.810450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.101 4.101 6 C -0.085 4.085 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.117 4.117 12 C 0.510 3.490 13 O -0.541 6.541 14 N -0.604 5.604 15 C 0.085 3.915 16 C 0.245 3.755 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.030 0.970 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -7.544 -18.434 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.106 0.894 5 C -0.139 4.139 6 C -0.104 4.104 7 C -0.153 4.153 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.157 4.157 11 C -0.155 4.155 12 C 0.296 3.704 13 O -0.418 6.418 14 N -0.335 5.335 15 C -0.059 4.059 16 C 0.126 3.874 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.729 -7.758 -17.701 21.637 hybrid contribution -1.084 0.236 0.215 1.130 sum 8.645 -7.522 -17.486 20.906 Atomic orbital electron populations 1.21793 0.95847 1.01525 1.02010 1.21413 0.96061 0.94768 1.02064 1.21516 0.96924 0.97592 0.97278 0.89381 1.21498 0.93565 1.01832 0.96967 1.21207 0.95334 0.99553 0.94284 1.21587 0.95640 1.01296 0.96730 1.21524 1.00192 0.98928 0.94975 1.21536 0.96094 0.99760 0.98310 1.21540 0.95714 1.01097 0.97306 1.21672 1.00974 0.98915 0.93914 1.20306 0.77738 0.82310 0.90010 1.90650 1.52269 1.63544 1.35377 1.48162 1.68366 1.07433 1.09588 1.21632 1.00359 0.97109 0.86778 1.19266 0.96340 0.91974 0.79830 1.21476 0.92222 1.36352 1.06007 0.92463 1.24942 0.98200 0.95313 0.95754 1.69944 1.34561 1.37989 1.11037 0.86460 0.85273 0.77525 0.78278 1.19816 1.20892 1.21001 0.93057 0.91685 0.93416 0.91865 0.90954 0.91660 0.91337 0.90779 0.91989 0.92025 0.92157 0.92355 0.92487 0.92108 0.92160 0.92256 0.91639 0.91885 0.93976 0.92630 0.90812 0.94083 0.95181 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.77 37.15 0.36 -1.97 16 2 C -0.11 -1.51 5.00 -26.74 -0.13 -1.64 16 3 C -0.11 -1.68 1.57 -91.78 -0.14 -1.82 16 4 H 0.09 1.19 4.06 -51.93 -0.21 0.98 16 5 C -0.10 -1.29 4.12 -26.73 -0.11 -1.40 16 6 C -0.09 -0.85 2.08 -90.62 -0.19 -1.04 16 7 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 8 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 9 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 10 C -0.12 -0.96 5.93 -26.70 -0.16 -1.12 16 11 C -0.12 -1.08 4.98 -26.70 -0.13 -1.22 16 12 C 0.51 10.69 5.76 -10.99 -0.06 10.63 16 13 O -0.54 -13.81 15.31 5.55 0.08 -13.73 16 14 N -0.60 -13.02 2.86 -182.95 -0.52 -13.54 16 15 C 0.09 1.39 10.06 59.85 0.60 1.99 16 16 C 0.25 6.54 5.10 -5.19 -0.03 6.52 16 17 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 21 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.23 6.96 -51.93 -0.36 0.87 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.73 6.31 -51.93 -0.33 0.40 16 29 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.74 6.30 -51.93 -0.33 0.42 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.62 6.45 -51.93 -0.33 0.29 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.76 6.16 -51.93 -0.32 0.44 16 45 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 46 H 0.04 1.23 7.48 -51.93 -0.39 0.85 16 47 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -32.51 366.18 -9.04 -41.55 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.97 Total: -2.51 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.87 Total: -8.20 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.21 Total: -39.82 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.51 -9.04 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072568837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.295 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds