Wall clock time and date at job start Tue Mar 31 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 H 1.09003 * 109.46682 * 305.88755 * 3 2 1 5 5 C 1.52998 * 109.47204 * 65.87989 * 3 2 1 6 6 C 1.52998 * 109.47265 * 186.62776 * 5 3 2 7 7 C 1.52997 * 109.47202 * 185.94900 * 6 5 3 8 8 C 1.52998 * 109.47202 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47294 * 59.99698 * 8 7 6 10 10 C 1.52992 * 109.46916 * 300.00335 * 9 8 7 11 11 C 1.52991 * 109.47275 * 65.94679 * 6 5 3 12 12 C 1.50698 * 109.47439 * 185.88594 * 3 2 1 13 13 O 1.21283 * 120.00094 * 240.00059 * 12 3 2 14 14 N 1.34779 * 119.99802 * 59.99743 * 12 3 2 15 15 C 1.46498 * 119.99688 * 180.02562 * 14 12 3 16 16 H 1.09002 * 109.46900 * 324.99215 * 15 14 12 17 17 C 1.52992 * 109.47716 * 85.00049 * 15 14 12 18 18 C 1.50703 * 109.46796 * 205.00010 * 15 14 12 19 19 H 1.07993 * 120.00151 * 359.97438 * 18 15 14 20 20 C 1.37881 * 120.00117 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99446 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00281 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46727 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47495 * 119.99606 * 22 20 18 25 25 H 1.48504 * 109.46760 * 240.00027 * 22 20 18 26 26 H 1.09000 * 109.46985 * 294.63758 * 1 2 3 27 27 H 1.09000 * 109.47065 * 54.63749 * 1 2 3 28 28 H 1.09004 * 109.47224 * 174.63276 * 1 2 3 29 29 H 1.09001 * 109.47249 * 239.99752 * 2 1 3 30 30 H 1.09001 * 109.46746 * 119.99901 * 2 1 3 31 31 H 1.09009 * 109.47002 * 66.62794 * 5 3 2 32 32 H 1.08996 * 109.47386 * 306.63266 * 5 3 2 33 33 H 1.09003 * 109.46768 * 305.94564 * 6 5 3 34 34 H 1.09002 * 109.47270 * 299.99993 * 7 6 5 35 35 H 1.09002 * 109.47156 * 59.99861 * 7 6 5 36 36 H 1.09005 * 109.47273 * 180.02562 * 8 7 6 37 37 H 1.09008 * 109.47192 * 299.99479 * 8 7 6 38 38 H 1.09005 * 109.47206 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.46721 * 60.00286 * 9 8 7 40 40 H 1.09002 * 109.47386 * 299.99544 * 10 9 8 41 41 H 1.09002 * 109.46830 * 179.97438 * 10 9 8 42 42 H 1.09000 * 109.47437 * 299.99951 * 11 6 5 43 43 H 1.09003 * 109.47317 * 60.00221 * 11 6 5 44 44 H 0.96995 * 120.00095 * 0.02562 * 14 12 3 45 45 H 1.08998 * 109.47432 * 179.97438 * 17 15 14 46 46 H 1.09010 * 109.46816 * 299.99788 * 17 15 14 47 47 H 1.09002 * 109.47617 * 59.99604 * 17 15 14 48 48 H 0.97008 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8326 5 6 1.6543 2.1198 1.3165 6 6 2.0168 3.6048 1.2514 7 6 1.7692 4.2505 2.6162 8 6 2.1311 5.7357 2.5509 9 6 1.2648 6.4258 1.4955 10 6 1.5124 5.7801 0.1308 11 6 1.1510 4.2954 0.1959 12 6 3.5400 1.4450 -0.1457 13 8 4.2324 1.9398 0.7185 14 7 4.1120 0.8974 -1.2363 15 6 5.5701 0.8994 -1.3777 16 1 5.9754 1.8159 -0.9488 17 6 6.1553 -0.3092 -0.6445 18 6 5.9332 0.8249 -2.8384 19 1 5.1557 0.7802 -3.5865 20 6 7.2582 0.8140 -3.2197 21 7 8.2051 0.8690 -2.3087 22 14 7.7084 0.7224 -5.0304 23 1 6.4688 0.6708 -5.8465 24 1 8.4988 1.9224 -5.4053 25 1 8.5152 -0.4993 -5.2786 26 1 -0.3633 0.4284 0.9341 27 1 -0.3633 0.5948 -0.8381 28 1 -0.3634 -1.0232 -0.0961 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1940 1.6498 2.1388 32 1 0.5817 2.0144 1.4788 33 1 3.0684 3.7107 0.9848 34 1 0.7177 4.1446 2.8829 35 1 2.3861 3.7586 3.3682 36 1 1.9552 6.1956 3.5234 37 1 3.1827 5.8421 2.2841 38 1 1.5223 7.4840 1.4493 39 1 0.2133 6.3195 1.7624 40 1 2.5639 5.8864 -0.1361 41 1 0.8949 6.2715 -0.6211 42 1 1.3274 3.8354 -0.7764 43 1 0.0994 4.1895 0.4626 44 1 3.5582 0.5020 -1.9276 45 1 7.2402 -0.3079 -0.7501 46 1 5.8927 -0.2553 0.4121 47 1 5.7500 -1.2257 -1.0733 48 1 9.1373 0.8617 -2.5769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072571431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:48 Heat of formation + Delta-G solvation = -93.696448 kcal Electronic energy + Delta-G solvation = -23436.716141 eV Core-core repulsion = 20296.244954 eV Total energy + Delta-G solvation = -3140.471187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70392 -38.09243 -35.38647 -34.60764 -32.41376 -31.71798 -30.64339 -29.15475 -27.77063 -25.25090 -24.73185 -22.59135 -21.88491 -21.31477 -20.14435 -19.57157 -19.02418 -17.06353 -15.86097 -15.61484 -15.16700 -14.53752 -14.34749 -14.28421 -14.03475 -13.88748 -13.69497 -13.36607 -12.88422 -12.44952 -12.30528 -12.18362 -12.02459 -11.99932 -11.71457 -11.50441 -11.15236 -11.07414 -11.00560 -10.97365 -10.79647 -10.73284 -10.63192 -10.57378 -10.31456 -10.21967 -10.08716 -9.81000 -9.70888 -9.00320 -8.74691 -8.51868 -7.81346 -6.10417 -4.19305 3.24264 3.32074 3.34763 3.50131 4.17738 4.42042 4.73180 4.82881 4.86648 5.03539 5.08717 5.17358 5.22199 5.32158 5.38269 5.48469 5.55362 5.62195 5.64819 5.68419 5.70877 5.78673 5.80984 5.85342 5.95764 6.09727 6.11152 6.12465 6.15990 6.24542 6.25225 6.35856 6.40353 6.41164 6.48011 6.63809 6.84034 6.87710 7.00903 7.19526 7.53205 7.61876 7.73459 7.95804 8.18562 8.74888 8.82996 9.23214 9.49040 10.95548 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.004450 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.671138 B = 6290.880692 C = 6998.482483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.112 4.112 4 H 0.091 0.909 5 C -0.090 4.090 6 C -0.094 4.094 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.114 4.114 12 C 0.505 3.495 13 O -0.552 6.552 14 N -0.711 5.711 15 C 0.264 3.736 16 H 0.047 0.953 17 C -0.145 4.145 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.386 0.614 45 H 0.089 0.911 46 H 0.014 0.986 47 H 0.025 0.975 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 4.025 5.791 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.134 4.134 4 H 0.109 0.891 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.158 4.158 11 C -0.151 4.151 12 C 0.290 3.710 13 O -0.431 6.431 14 N -0.358 5.358 15 C 0.162 3.838 16 H 0.065 0.935 17 C -0.204 4.204 18 C -0.570 4.570 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.219 0.781 45 H 0.107 0.893 46 H 0.033 0.967 47 H 0.044 0.956 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.543 4.379 6.413 17.375 hybrid contribution 0.102 -0.309 -1.392 1.429 sum -15.442 4.070 5.021 16.740 Atomic orbital electron populations 1.21810 0.95576 1.01441 1.01860 1.21494 0.95917 0.95163 1.02789 1.21504 0.93998 0.97478 1.00403 0.89093 1.21424 1.00023 0.95092 0.96260 1.21297 1.01966 0.93571 0.94429 1.21509 1.00564 0.95069 0.97469 1.21532 1.00201 0.95803 0.98237 1.21510 0.99653 0.98841 0.95395 1.21521 1.01741 0.95902 0.96654 1.21623 0.99183 0.95062 0.99261 1.20425 0.89578 0.78502 0.82512 1.90612 1.64693 1.46500 1.41298 1.46541 1.10506 1.58033 1.20736 1.18695 0.73739 0.95731 0.95585 0.93519 1.22061 1.04387 0.97941 0.96028 1.21271 0.92323 1.52204 0.91222 0.92133 1.24890 0.96229 0.94734 0.97880 1.69920 1.00086 1.49464 1.32659 0.86418 0.78505 0.77690 0.84629 1.19754 1.20893 1.20899 0.92533 0.92682 0.92829 0.91428 0.91595 0.91392 0.92014 0.88861 0.92779 0.92108 0.92592 0.91847 0.92570 0.92444 0.91853 0.92529 0.92128 0.92614 0.78131 0.89293 0.96727 0.95614 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.56 37.16 0.36 -1.10 16 2 C -0.12 -1.43 5.35 -26.73 -0.14 -1.57 16 3 C -0.11 -1.61 2.08 -91.77 -0.19 -1.80 16 4 H 0.09 1.20 6.32 -51.93 -0.33 0.88 16 5 C -0.09 -1.21 3.69 -26.73 -0.10 -1.31 16 6 C -0.09 -1.31 1.98 -90.63 -0.18 -1.49 16 7 C -0.11 -1.34 5.20 -26.73 -0.14 -1.47 16 8 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 9 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 10 C -0.12 -1.41 5.92 -26.76 -0.16 -1.57 16 11 C -0.11 -1.39 4.98 -26.76 -0.13 -1.52 16 12 C 0.50 9.90 6.79 -10.99 -0.07 9.82 16 13 O -0.55 -12.85 13.76 5.55 0.08 -12.77 16 14 N -0.71 -14.83 4.92 -54.94 -0.27 -15.10 16 15 C 0.26 6.78 2.56 -69.09 -0.18 6.60 16 16 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 17 C -0.15 -3.67 9.26 37.15 0.34 -3.33 16 18 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 22 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.06 0.52 6.71 -51.93 -0.35 0.17 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.84 7.40 -51.93 -0.38 0.46 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.02 7.90 -51.92 -0.41 0.61 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.09 1.66 6.02 -51.93 -0.31 1.35 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.77 6.46 -51.93 -0.34 0.43 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.39 7.09 7.89 -40.82 -0.32 6.76 16 45 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 46 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -29.44 362.94 -9.37 -38.81 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.94 Total: 6.82 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.31 Total: -14.49 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.36 Total: -39.57 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.44 -9.37 -38.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.888 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds