Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 H 1.08993 * 109.46837 * 185.26717 * 3 2 1 5 5 C 1.52997 * 109.47037 * 65.26601 * 3 2 1 6 6 C 1.53000 * 109.47244 * 64.79827 * 5 3 2 7 7 C 1.52994 * 109.47345 * 64.91705 * 6 5 3 8 8 C 1.53000 * 109.47345 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47339 * 300.00643 * 8 7 6 10 10 C 1.53002 * 109.47088 * 59.99710 * 9 8 7 11 11 C 1.52999 * 109.46969 * 299.99870 * 10 9 8 12 12 C 1.50702 * 109.46872 * 305.26377 * 3 2 1 13 13 O 1.21290 * 119.99358 * 109.27778 * 12 3 2 14 14 N 1.34772 * 120.00168 * 289.27963 * 12 3 2 15 15 C 1.46503 * 119.99578 * 184.87640 * 14 12 3 16 16 H 1.08994 * 109.47435 * 324.99806 * 15 14 12 17 17 C 1.52995 * 109.47162 * 85.00318 * 15 14 12 18 18 C 1.50704 * 109.46888 * 204.99983 * 15 14 12 19 19 H 1.07998 * 119.99675 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00194 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99547 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00327 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47046 * 90.00089 * 22 20 18 24 24 H 1.48493 * 109.47086 * 210.00177 * 22 20 18 25 25 H 1.48498 * 109.46887 * 330.00391 * 22 20 18 26 26 H 1.08999 * 109.47299 * 55.72172 * 1 2 3 27 27 H 1.09006 * 109.47177 * 175.71885 * 1 2 3 28 28 H 1.09002 * 109.47244 * 295.72064 * 1 2 3 29 29 H 1.08999 * 109.46755 * 239.99762 * 2 1 3 30 30 H 1.09005 * 109.46839 * 119.99720 * 2 1 3 31 31 H 1.08992 * 109.47476 * 304.79473 * 5 3 2 32 32 H 1.09005 * 109.46621 * 184.79261 * 5 3 2 33 33 H 1.09004 * 109.46705 * 304.92160 * 6 5 3 34 34 H 1.09004 * 109.46847 * 60.00542 * 7 6 5 35 35 H 1.08993 * 109.47729 * 300.00604 * 7 6 5 36 36 H 1.09001 * 109.47149 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.46705 * 60.00455 * 8 7 6 38 38 H 1.08994 * 109.46907 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.47069 * 299.99589 * 9 8 7 40 40 H 1.08997 * 109.47522 * 60.00222 * 10 9 8 41 41 H 1.08999 * 109.46848 * 180.02562 * 10 9 8 42 42 H 1.08994 * 109.47982 * 300.00243 * 11 10 9 43 43 H 1.08999 * 109.47317 * 179.97438 * 11 10 9 44 44 H 0.96999 * 120.00081 * 4.88227 * 14 12 3 45 45 H 1.09004 * 109.47166 * 299.99515 * 17 15 14 46 46 H 1.08994 * 109.47364 * 59.99444 * 17 15 14 47 47 H 1.09004 * 109.47059 * 179.97438 * 17 15 14 48 48 H 0.97004 * 119.99644 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4439 -0.0943 5 6 1.6410 2.1245 1.3101 6 6 2.3518 1.4393 2.4789 7 6 3.8616 1.6523 2.3532 8 6 4.5724 0.9676 3.5224 9 6 4.0806 1.5684 4.8407 10 6 2.5707 1.3553 4.9664 11 6 1.8599 2.0401 3.7973 12 6 1.4340 2.1895 -1.1601 13 8 0.5988 3.0460 -0.9600 14 7 1.8201 1.9059 -2.4198 15 6 1.3117 2.7032 -3.5388 16 1 0.2830 3.0003 -3.3354 17 6 2.1788 3.9520 -3.7106 18 6 1.3572 1.8825 -4.8019 19 1 1.7273 0.8683 -4.7738 20 6 0.9262 2.4263 -5.9933 21 7 0.4760 3.6616 -6.0275 22 14 0.9832 1.4092 -7.5592 23 1 -0.2968 0.6736 -7.7184 24 1 1.1870 2.3063 -8.7249 25 1 2.1048 0.4393 -7.4788 26 1 -0.3634 0.5788 -0.8492 27 1 -0.3634 -1.0248 -0.0767 28 1 -0.3634 0.4460 0.9258 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 0.5622 2.0480 1.4458 32 1 1.9292 3.1752 1.2752 33 1 2.1329 0.3716 2.4617 34 1 4.0806 2.7200 2.3705 35 1 4.2120 1.2247 1.4139 36 1 5.6480 1.1197 3.4330 37 1 4.3535 -0.1001 3.5056 38 1 4.5866 1.0803 5.6736 39 1 4.2995 2.6361 4.8575 40 1 2.3517 0.2876 4.9497 41 1 2.2202 1.7837 5.9054 42 1 2.0788 3.1077 3.8140 43 1 0.7843 1.8879 3.8865 44 1 2.4345 1.1738 -2.5856 45 1 2.1459 4.5457 -2.7970 46 1 3.2075 3.6549 -3.9140 47 1 1.8007 4.5450 -4.5434 48 1 0.1731 4.0443 -6.8658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072571432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = -92.948431 kcal Electronic energy + Delta-G solvation = -23191.238380 eV Core-core repulsion = 20050.799630 eV Total energy + Delta-G solvation = -3140.438751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76159 -38.41405 -35.40993 -34.53104 -32.35218 -31.63569 -30.86412 -29.05634 -27.88928 -25.24899 -24.75650 -22.73761 -22.58999 -21.37803 -20.10463 -19.56255 -18.70119 -16.90171 -15.85087 -15.55414 -15.28142 -15.11527 -14.72313 -14.27933 -14.19717 -13.95363 -13.49340 -13.32328 -12.92386 -12.57619 -12.29648 -12.27246 -12.09136 -11.94348 -11.64645 -11.59539 -11.31547 -11.20560 -11.05659 -10.99605 -10.88441 -10.72301 -10.58230 -10.50770 -10.28733 -10.25908 -10.21241 -10.05801 -9.87284 -9.01444 -8.80089 -8.51276 -7.81552 -6.09898 -4.18843 3.25541 3.32079 3.33951 3.52158 4.13869 4.39287 4.59601 4.60820 4.69681 4.98387 5.03406 5.18479 5.19537 5.22697 5.26669 5.34954 5.42092 5.43230 5.45831 5.54997 5.63387 5.74334 5.83147 5.85051 5.89370 5.95847 6.00973 6.05732 6.11813 6.13285 6.18288 6.22506 6.25842 6.37071 6.49184 6.51864 6.66821 6.85534 6.99182 7.18901 7.53116 7.62163 7.73922 7.95697 8.18683 8.75163 8.83336 9.23237 9.49351 10.96093 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.003419 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.431029 B = 8187.913118 C = 8284.699167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.094 4.094 6 C -0.088 4.088 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.119 4.119 11 C -0.114 4.114 12 C 0.508 3.492 13 O -0.557 6.557 14 N -0.711 5.711 15 C 0.263 3.737 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.387 0.613 45 H 0.012 0.988 46 H 0.025 0.975 47 H 0.090 0.910 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 -6.892 18.477 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.133 4.133 4 H 0.106 0.894 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.156 4.156 11 C -0.152 4.152 12 C 0.293 3.707 13 O -0.436 6.436 14 N -0.359 5.359 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.108 0.892 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.922 -6.104 18.446 20.312 hybrid contribution 0.386 -0.817 -1.072 1.402 sum 6.308 -6.921 17.374 19.737 Atomic orbital electron populations 1.21842 0.95441 1.01299 1.02702 1.21488 0.96765 0.94566 1.02139 1.21460 1.01047 0.96064 0.94766 0.89421 1.21422 1.00971 0.99310 0.91452 1.21241 0.94791 1.00281 0.94304 1.21663 0.94991 1.00868 0.98008 1.21534 0.99410 0.99906 0.94801 1.21537 0.95906 1.00950 0.97317 1.21528 0.95278 1.00669 0.98138 1.21574 0.99606 1.00018 0.94001 1.20387 0.82435 0.83433 0.84424 1.90638 1.33216 1.34502 1.85263 1.46517 1.47645 1.34920 1.06803 1.18698 0.94541 0.88332 0.82266 0.93416 1.22079 0.98609 0.99531 1.00284 1.21234 1.44033 0.99328 0.92451 0.92158 1.24893 0.94789 0.95047 0.99025 1.69911 1.41938 1.13452 1.26872 0.86464 0.78435 0.79870 0.82422 1.20584 1.21093 1.19862 0.91896 0.93065 0.92543 0.91688 0.91258 0.90914 0.91625 0.90947 0.92007 0.91686 0.92331 0.92176 0.92506 0.92132 0.92184 0.92385 0.92007 0.92040 0.78121 0.96859 0.95536 0.89187 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.34 37.16 0.35 -1.83 16 2 C -0.11 -1.41 5.57 -26.73 -0.15 -1.55 16 3 C -0.11 -1.61 2.36 -91.77 -0.22 -1.82 16 4 H 0.09 1.13 6.35 -51.93 -0.33 0.80 16 5 C -0.09 -1.26 3.32 -26.73 -0.09 -1.35 16 6 C -0.09 -0.91 2.06 -90.62 -0.19 -1.10 16 7 C -0.12 -1.15 4.96 -26.73 -0.13 -1.29 16 8 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 9 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 10 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 11 C -0.11 -1.11 5.20 -26.73 -0.14 -1.24 16 12 C 0.51 10.11 5.44 -10.99 -0.06 10.05 16 13 O -0.56 -13.35 15.66 5.55 0.09 -13.27 16 14 N -0.71 -14.98 5.07 -54.93 -0.28 -15.26 16 15 C 0.26 6.81 2.60 -69.08 -0.18 6.63 16 16 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 17 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 18 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 22 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.06 1.10 6.89 -51.93 -0.36 0.74 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.75 6.68 -51.93 -0.35 0.40 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.72 6.23 -51.93 -0.32 0.40 16 31 H 0.07 1.06 6.42 -51.93 -0.33 0.73 16 32 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.07 0.73 6.24 -51.93 -0.32 0.40 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.64 6.46 -51.93 -0.34 0.31 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 48 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -29.93 362.23 -9.32 -39.25 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.86 Total: 5.77 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.33 Total: -13.18 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.35 Total: -39.83 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.93 -9.32 -39.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.700 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds