Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46971 * 2 1 4 4 H 1.09004 * 109.46779 * 306.13012 * 3 2 1 5 5 C 1.52995 * 109.47097 * 66.12769 * 3 2 1 6 6 C 1.53004 * 109.47000 * 186.55345 * 5 3 2 7 7 C 1.53006 * 109.46916 * 186.03120 * 6 5 3 8 8 C 1.53004 * 109.46916 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47067 * 59.99535 * 8 7 6 10 10 C 1.53004 * 109.47275 * 299.99618 * 9 8 7 11 11 C 1.52995 * 109.47395 * 66.02462 * 6 5 3 12 12 C 1.50696 * 109.47184 * 186.13230 * 3 2 1 13 13 O 1.21285 * 119.99631 * 240.00200 * 12 3 2 14 14 N 1.34770 * 120.00242 * 59.99511 * 12 3 2 15 15 C 1.46504 * 120.00013 * 180.02562 * 14 12 3 16 16 H 1.09001 * 109.47198 * 34.99727 * 15 14 12 17 17 C 1.53006 * 109.47016 * 274.99876 * 15 14 12 18 18 C 1.50701 * 109.47282 * 155.00239 * 15 14 12 19 19 H 1.08000 * 119.99763 * 34.66332 * 18 15 14 20 20 C 1.37882 * 119.99847 * 214.66367 * 18 15 14 21 21 N 1.31518 * 119.99661 * 184.40463 * 20 18 15 22 22 Si 1.86792 * 119.99938 * 4.41122 * 20 18 15 23 23 H 1.48503 * 109.47362 * 94.29876 * 22 20 18 24 24 H 1.48498 * 109.47064 * 214.29992 * 22 20 18 25 25 H 1.48496 * 109.47485 * 334.29426 * 22 20 18 26 26 H 1.09005 * 109.47367 * 64.41956 * 1 2 3 27 27 H 1.08996 * 109.46911 * 184.42219 * 1 2 3 28 28 H 1.09005 * 109.47375 * 304.41932 * 1 2 3 29 29 H 1.09000 * 109.47216 * 240.00351 * 2 1 3 30 30 H 1.08991 * 109.47307 * 119.99589 * 2 1 3 31 31 H 1.08994 * 109.47052 * 66.55089 * 5 3 2 32 32 H 1.09002 * 109.47350 * 306.54764 * 5 3 2 33 33 H 1.09005 * 109.46665 * 306.02324 * 6 5 3 34 34 H 1.08997 * 109.47498 * 59.99406 * 7 6 5 35 35 H 1.09005 * 109.46804 * 299.99119 * 7 6 5 36 36 H 1.08998 * 109.46954 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.46959 * 299.99599 * 8 7 6 38 38 H 1.08992 * 109.47340 * 60.00485 * 9 8 7 39 39 H 1.09004 * 109.46861 * 180.02562 * 9 8 7 40 40 H 1.09000 * 109.47491 * 300.00388 * 10 9 8 41 41 H 1.09006 * 109.47062 * 179.97438 * 10 9 8 42 42 H 1.08997 * 109.47114 * 300.00258 * 11 6 5 43 43 H 1.09000 * 109.46857 * 60.00194 * 11 6 5 44 44 H 0.97000 * 120.00073 * 0.02562 * 14 12 3 45 45 H 1.09003 * 109.46968 * 55.06682 * 17 15 14 46 46 H 1.08994 * 109.47328 * 175.06496 * 17 15 14 47 47 H 1.09002 * 109.47165 * 295.07157 * 17 15 14 48 48 H 0.96997 * 119.99298 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5897 1.9871 -0.8301 5 6 1.6596 2.1180 1.3191 6 6 2.0234 3.6027 1.2553 7 6 1.7833 4.2459 2.6227 8 6 2.1477 5.7305 2.5591 9 6 1.2780 6.4246 1.5090 10 6 1.5183 5.7815 0.1417 11 6 1.1533 4.2965 0.2054 12 6 3.5393 1.4453 -0.1518 13 8 4.2351 1.9389 0.7103 14 7 4.1069 0.8993 -1.2453 15 6 5.5645 0.9015 -1.3926 16 1 6.0287 0.7760 -0.4144 17 6 6.0134 2.2306 -2.0033 18 6 5.9800 -0.2317 -2.2950 19 1 5.3489 -0.5230 -3.1216 20 6 7.1659 -0.8966 -2.0653 21 7 7.5709 -1.8268 -2.9021 22 14 8.1971 -0.4761 -0.5656 23 1 7.8566 -1.4017 0.5446 24 1 9.6372 -0.6137 -0.9007 25 1 7.9174 0.9214 -0.1485 26 1 -0.3634 0.4437 -0.9270 27 1 -0.3633 -1.0246 0.0792 28 1 -0.3634 0.5809 0.8478 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 2.2015 1.6459 2.1384 32 1 0.5873 2.0136 1.4848 33 1 3.0739 3.7080 0.9838 34 1 2.4031 3.7516 3.3706 35 1 0.7328 4.1406 2.8942 36 1 1.9771 6.1885 3.5333 37 1 3.1982 5.8354 2.2877 38 1 0.2276 6.3198 1.7804 39 1 1.5380 7.4822 1.4634 40 1 2.5688 5.8864 -0.1297 41 1 0.8983 6.2758 -0.6063 42 1 1.3245 3.8383 -0.7687 43 1 0.1029 4.1912 0.4769 44 1 3.5504 0.5048 -1.9350 45 1 5.6375 3.0546 -1.3967 46 1 7.1023 2.2680 -2.0320 47 1 5.6200 2.3163 -3.0163 48 1 8.4054 -2.2943 -2.7407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072571433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -92.894797 kcal Electronic energy + Delta-G solvation = -23550.306970 eV Core-core repulsion = 20409.870545 eV Total energy + Delta-G solvation = -3140.436425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80745 -38.19655 -35.47846 -34.68724 -32.39447 -31.81173 -30.71526 -29.82952 -27.94226 -25.31523 -24.80399 -22.65945 -21.90847 -21.35569 -20.00481 -19.64728 -19.25280 -17.33075 -16.11634 -15.65906 -15.46689 -14.59829 -14.35292 -14.26557 -14.02154 -13.91956 -13.74188 -13.28249 -13.22148 -12.53190 -12.45725 -12.38030 -12.18741 -12.07119 -11.96831 -11.62460 -11.42444 -11.20778 -11.07596 -11.06876 -10.88546 -10.79034 -10.69504 -10.61348 -10.55646 -10.22152 -9.87922 -9.82501 -9.77516 -9.15065 -8.86198 -8.67650 -7.99248 -6.22184 -4.25277 3.25341 3.34730 3.38197 3.42962 4.10037 4.33715 4.66562 4.75507 4.79111 4.97859 5.05254 5.09843 5.21700 5.25339 5.34054 5.43000 5.50472 5.55681 5.56888 5.63485 5.64734 5.71580 5.74642 5.81778 5.93517 6.02652 6.04307 6.10531 6.13585 6.16896 6.21574 6.29233 6.33150 6.36610 6.39524 6.42864 6.54231 6.57880 6.71017 6.77996 6.99095 7.22941 7.43031 7.62159 8.18075 8.64235 8.79296 9.08854 9.40755 10.89702 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.004726 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.410697 B = 5923.210749 C = 6612.699950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.111 4.111 4 H 0.092 0.908 5 C -0.092 4.092 6 C -0.094 4.094 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.114 4.114 12 C 0.505 3.495 13 O -0.556 6.556 14 N -0.705 5.705 15 C 0.228 3.772 16 H 0.052 0.948 17 C -0.146 4.146 18 C -0.529 4.529 19 H 0.077 0.923 20 C 0.080 3.920 21 N -0.890 5.890 22 Si 0.872 3.128 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.257 1.257 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.391 0.609 45 H 0.028 0.972 46 H 0.049 0.951 47 H 0.045 0.955 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 10.753 7.302 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.133 4.133 4 H 0.110 0.890 5 C -0.130 4.130 6 C -0.112 4.112 7 C -0.147 4.147 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.158 4.158 11 C -0.152 4.152 12 C 0.290 3.710 13 O -0.436 6.436 14 N -0.353 5.353 15 C 0.126 3.874 16 H 0.070 0.930 17 C -0.205 4.205 18 C -0.567 4.567 19 H 0.096 0.904 20 C -0.124 4.124 21 N -0.527 5.527 22 Si 0.699 3.301 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.181 1.181 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.224 0.776 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.763 10.956 7.852 19.991 hybrid contribution 0.411 -0.160 0.261 0.513 sum -14.352 10.795 8.113 19.706 Atomic orbital electron populations 1.21826 0.95556 1.01580 1.01819 1.21512 0.95945 0.94952 1.03137 1.21481 0.93673 0.97751 1.00370 0.89023 1.21451 1.00209 0.95017 0.96277 1.21301 1.01814 0.93634 0.94488 1.21515 1.00672 0.95042 0.97435 1.21528 1.00077 0.95823 0.98312 1.21513 0.99731 0.98826 0.95367 1.21540 1.01596 0.95940 0.96692 1.21648 0.99285 0.94989 0.99243 1.20537 0.89818 0.78326 0.82324 1.90601 1.64501 1.46652 1.41820 1.46635 1.09816 1.57737 1.21123 1.19170 0.76855 0.94032 0.97372 0.93023 1.22205 1.00510 0.97945 0.99828 1.21031 1.06749 1.15301 1.13597 0.90449 1.24938 0.97186 0.94062 0.96182 1.69893 1.22470 1.24178 1.36149 0.86904 0.79530 0.80213 0.83478 1.20084 1.21099 1.18102 0.92748 0.92739 0.92446 0.91085 0.91527 0.91339 0.91842 0.88983 0.92113 0.92691 0.92560 0.91949 0.92364 0.92565 0.91983 0.92498 0.92146 0.92502 0.77561 0.95299 0.93147 0.93568 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.79 37.16 0.36 -1.12 16 2 C -0.12 -1.47 5.35 -26.73 -0.14 -1.62 16 3 C -0.11 -1.54 2.08 -91.77 -0.19 -1.73 16 4 H 0.09 1.14 6.33 -51.93 -0.33 0.81 16 5 C -0.09 -1.19 3.69 -26.73 -0.10 -1.29 16 6 C -0.09 -1.23 1.98 -90.62 -0.18 -1.41 16 7 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 8 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 9 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 10 C -0.12 -1.29 5.93 -26.70 -0.16 -1.45 16 11 C -0.11 -1.29 4.99 -26.71 -0.13 -1.42 16 12 C 0.50 9.46 6.79 -10.99 -0.07 9.39 16 13 O -0.56 -12.28 13.76 5.55 0.08 -12.20 16 14 N -0.71 -14.13 4.92 -54.93 -0.27 -14.40 16 15 C 0.23 5.45 2.18 -69.08 -0.15 5.30 16 16 H 0.05 1.35 4.55 -51.93 -0.24 1.12 16 17 C -0.15 -3.23 9.47 37.16 0.35 -2.88 16 18 C -0.53 -14.24 9.05 -34.44 -0.31 -14.56 16 19 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 20 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 22 Si 0.87 21.67 27.27 -169.99 -4.63 17.03 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.26 -6.33 6.42 56.52 0.36 -5.96 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.53 6.29 -51.93 -0.33 0.20 16 29 H 0.07 0.92 7.40 -51.93 -0.38 0.54 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 32 H 0.06 0.69 6.25 -51.93 -0.32 0.36 16 33 H 0.09 1.53 6.01 -51.93 -0.31 1.21 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.70 6.47 -51.93 -0.34 0.37 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.39 7.01 7.94 -40.82 -0.32 6.68 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -30.09 361.96 -8.80 -38.88 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.92 Total: 5.53 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.28 Total: -14.78 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.50 Total: -39.92 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.63 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.09 -8.80 -38.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.011 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds