Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47349 * 2 1 4 4 H 1.08994 * 109.47122 * 184.96921 * 3 2 1 5 5 C 1.52996 * 109.47019 * 64.96615 * 3 2 1 6 6 C 1.53005 * 109.47055 * 65.12101 * 5 3 2 7 7 C 1.52999 * 109.47101 * 66.02496 * 6 5 3 8 8 C 1.52996 * 109.46993 * 180.02562 * 7 6 5 9 9 C 1.53014 * 109.47026 * 299.99583 * 8 7 6 10 10 C 1.53003 * 109.46713 * 60.00049 * 9 8 7 11 11 C 1.52995 * 109.47413 * 300.00150 * 10 9 8 12 12 C 1.50697 * 109.46786 * 304.96691 * 3 2 1 13 13 O 1.21287 * 119.99650 * 113.44220 * 12 3 2 14 14 N 1.34777 * 120.00387 * 293.43870 * 12 3 2 15 15 C 1.46497 * 120.00356 * 184.98771 * 14 12 3 16 16 H 1.09001 * 109.46896 * 34.99775 * 15 14 12 17 17 C 1.53005 * 109.47259 * 275.00497 * 15 14 12 18 18 C 1.50700 * 109.47156 * 155.00057 * 15 14 12 19 19 H 1.07994 * 120.00382 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99586 * 180.02562 * 18 15 14 21 21 N 1.31516 * 120.00309 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99629 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.47426 * 59.99583 * 22 20 18 24 24 H 1.48499 * 109.47343 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47139 * 300.00092 * 22 20 18 26 26 H 1.08997 * 109.47270 * 64.62440 * 1 2 3 27 27 H 1.09000 * 109.47121 * 184.62552 * 1 2 3 28 28 H 1.08996 * 109.47076 * 304.62575 * 1 2 3 29 29 H 1.09000 * 109.47261 * 239.99772 * 2 1 3 30 30 H 1.09007 * 109.47501 * 120.00417 * 2 1 3 31 31 H 1.09002 * 109.47312 * 305.12359 * 5 3 2 32 32 H 1.09002 * 109.47341 * 185.12123 * 5 3 2 33 33 H 1.08996 * 109.46849 * 306.02094 * 6 5 3 34 34 H 1.08993 * 109.47155 * 60.00305 * 7 6 5 35 35 H 1.09001 * 109.46931 * 300.00064 * 7 6 5 36 36 H 1.08998 * 109.47546 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47735 * 59.99462 * 8 7 6 38 38 H 1.08996 * 109.46980 * 180.02562 * 9 8 7 39 39 H 1.08999 * 109.46765 * 300.00474 * 9 8 7 40 40 H 1.08999 * 109.47158 * 60.00666 * 10 9 8 41 41 H 1.09001 * 109.46750 * 179.97438 * 10 9 8 42 42 H 1.08999 * 109.47379 * 300.00380 * 11 10 9 43 43 H 1.08998 * 109.47624 * 180.02562 * 11 10 9 44 44 H 0.96999 * 119.99335 * 4.99139 * 14 12 3 45 45 H 1.09001 * 109.47143 * 59.99678 * 17 15 14 46 46 H 1.09002 * 109.47231 * 179.97438 * 17 15 14 47 47 H 1.09001 * 109.46577 * 299.99474 * 17 15 14 48 48 H 0.96997 * 119.99986 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 -0.0890 5 6 1.6346 2.1268 1.3070 6 6 2.3459 1.4487 2.4797 7 6 3.8525 1.6919 2.3718 8 6 4.5638 1.0133 3.5442 9 6 4.0462 1.5957 4.8610 10 6 2.5395 1.3525 4.9688 11 6 1.8282 2.0311 3.7964 12 6 1.4398 2.1875 -1.1643 13 8 0.6603 3.0953 -0.9664 14 7 1.7691 1.8450 -2.4256 15 6 1.2724 2.6373 -3.5533 16 1 1.2244 3.6877 -3.2661 17 6 -0.1251 2.1507 -3.9422 18 6 2.2041 2.4794 -4.7272 19 1 3.0785 1.8514 -4.6419 20 6 1.9401 3.1368 -5.9100 21 7 0.8750 3.9012 -6.0140 22 14 3.0946 2.9405 -7.3654 23 1 3.1589 1.5095 -7.7568 24 1 2.5918 3.7447 -8.5081 25 1 4.4514 3.4118 -6.9880 26 1 -0.3634 0.4404 -0.9285 27 1 -0.3633 -1.0243 0.0829 28 1 -0.3633 0.5839 0.8456 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5558 2.0454 1.4403 32 1 1.9177 3.1787 1.2694 33 1 2.1480 0.3771 2.4541 34 1 4.0503 2.7634 2.3975 35 1 4.2214 1.2767 1.4339 36 1 5.6373 1.1861 3.4672 37 1 4.3660 -0.0583 3.5182 38 1 4.5533 1.1126 5.6962 39 1 4.2440 2.6673 4.8869 40 1 2.3416 0.2810 4.9428 41 1 2.1708 1.7670 5.9071 42 1 2.0260 3.1026 3.8224 43 1 0.7547 1.8582 3.8734 44 1 2.3351 1.0738 -2.5865 45 1 -0.7990 2.2649 -3.0930 46 1 -0.4949 2.7405 -4.7809 47 1 -0.0771 1.1003 -4.2293 48 1 0.6891 4.3634 -6.8463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072571434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = -92.634398 kcal Electronic energy + Delta-G solvation = -23200.981962 eV Core-core repulsion = 20060.556829 eV Total energy + Delta-G solvation = -3140.425133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75747 -38.40817 -35.40483 -34.55296 -32.36383 -31.61697 -30.85793 -29.08251 -27.85806 -25.23078 -24.76666 -22.73507 -22.60155 -21.38335 -20.11108 -19.56557 -18.68603 -16.88073 -15.89246 -15.60263 -15.17397 -15.09870 -14.75973 -14.29383 -14.19784 -14.00793 -13.53176 -13.07763 -12.93577 -12.76798 -12.34852 -12.27147 -12.10844 -11.86643 -11.69836 -11.51229 -11.32915 -11.20220 -11.07031 -10.96146 -10.91239 -10.70036 -10.56136 -10.52216 -10.30051 -10.26580 -10.19873 -10.05203 -9.86824 -9.02705 -8.78808 -8.50653 -7.81911 -6.09714 -4.19042 3.26494 3.31713 3.32875 3.52908 4.14160 4.39314 4.60228 4.61248 4.70333 4.97909 5.03356 5.17327 5.19800 5.21496 5.25908 5.35331 5.42585 5.43737 5.45797 5.55325 5.62161 5.74066 5.82315 5.83628 5.89755 5.96119 6.01647 6.06665 6.11032 6.12916 6.17672 6.21341 6.25950 6.36659 6.44469 6.52635 6.67390 6.87553 7.02923 7.20659 7.53609 7.62168 7.73839 7.96581 8.19369 8.75351 8.83079 9.23379 9.49238 10.96127 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.003545 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.247053 B = 7897.143157 C = 8314.620763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.094 4.094 6 C -0.088 4.088 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.114 4.114 12 C 0.508 3.492 13 O -0.557 6.557 14 N -0.711 5.711 15 C 0.266 3.734 16 H 0.045 0.955 17 C -0.146 4.146 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.387 0.613 45 H 0.015 0.985 46 H 0.088 0.912 47 H 0.025 0.975 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -8.201 18.387 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.134 4.134 4 H 0.107 0.893 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.156 4.156 11 C -0.152 4.152 12 C 0.293 3.707 13 O -0.436 6.436 14 N -0.359 5.359 15 C 0.164 3.836 16 H 0.063 0.937 17 C -0.204 4.204 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.219 0.781 45 H 0.034 0.966 46 H 0.107 0.893 47 H 0.044 0.956 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.978 -7.391 18.349 20.177 hybrid contribution 0.908 -0.451 -1.020 1.438 sum 4.886 -7.842 17.328 19.638 Atomic orbital electron populations 1.21852 0.95520 1.01106 1.02873 1.21494 0.96676 0.94674 1.02144 1.21450 1.01199 0.95966 0.94747 0.89260 1.21438 1.00832 0.99502 0.91432 1.21242 0.94783 1.00292 0.94289 1.21661 0.94983 1.00891 0.97996 1.21534 0.99359 0.99960 0.94796 1.21538 0.95862 1.00987 0.97327 1.21526 0.95300 1.00643 0.98130 1.21573 0.99497 1.00128 0.93996 1.20386 0.81898 0.84007 0.84431 1.90636 1.35654 1.31811 1.85483 1.46519 1.51242 1.31714 1.06408 1.18679 0.91424 0.91404 0.82067 0.93703 1.22059 0.98103 0.99572 1.00705 1.21207 1.09242 1.30003 0.96774 0.92203 1.24891 0.95427 0.94787 0.98612 1.69899 1.25821 1.29609 1.26816 0.86522 0.80880 0.78163 0.81598 1.20173 1.21146 1.20193 0.92165 0.93078 0.92280 0.91728 0.91240 0.90989 0.91457 0.90974 0.91966 0.91695 0.92324 0.92195 0.92512 0.92127 0.92204 0.92393 0.91997 0.92063 0.78138 0.96608 0.89340 0.95632 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.35 37.16 0.35 -1.76 16 2 C -0.11 -1.38 5.56 -26.73 -0.15 -1.53 16 3 C -0.11 -1.61 2.38 -91.77 -0.22 -1.83 16 4 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 5 C -0.09 -1.27 3.32 -26.73 -0.09 -1.36 16 6 C -0.09 -0.91 2.07 -90.62 -0.19 -1.10 16 7 C -0.12 -1.17 4.98 -26.73 -0.13 -1.31 16 8 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 9 C -0.12 -0.97 5.92 -26.72 -0.16 -1.13 16 10 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 11 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 12 C 0.51 10.10 5.63 -10.99 -0.06 10.04 16 13 O -0.56 -13.33 15.67 5.55 0.09 -13.24 16 14 N -0.71 -14.97 5.05 -54.93 -0.28 -15.25 16 15 C 0.27 6.88 2.52 -69.08 -0.17 6.70 16 16 H 0.05 1.34 7.65 -51.93 -0.40 0.94 16 17 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 18 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 21 N -0.88 -25.22 11.32 55.43 0.63 -24.59 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.06 0.99 7.26 -51.93 -0.38 0.62 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.78 6.26 -51.93 -0.33 0.46 16 29 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 30 H 0.07 0.71 6.24 -51.93 -0.32 0.39 16 31 H 0.07 1.04 6.25 -51.93 -0.32 0.71 16 32 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.07 0.72 6.22 -51.93 -0.32 0.40 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 6.49 -51.93 -0.34 0.32 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 7.13 8.41 -40.82 -0.34 6.79 16 45 H 0.01 0.38 8.10 -51.93 -0.42 -0.04 16 46 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -29.92 361.97 -9.30 -39.22 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.84 Total: 5.73 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.33 Total: -13.11 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.35 Total: -39.84 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.92 -9.30 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.410 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds