Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47203 * 2 1 4 4 N 1.46507 * 109.46967 * 119.99713 * 2 1 3 5 5 C 1.46493 * 119.99886 * 305.22674 * 4 2 1 6 6 C 1.50698 * 109.47314 * 269.99552 * 5 4 2 7 7 H 1.07996 * 119.99874 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00142 * 179.72668 * 6 5 4 9 9 N 1.31518 * 119.99859 * 0.27911 * 8 6 5 10 10 Si 1.86797 * 119.99987 * 180.27865 * 8 6 5 11 11 H 1.48506 * 109.47227 * 59.99915 * 10 8 6 12 12 H 1.48497 * 109.47258 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47149 * 299.99982 * 10 8 6 14 14 C 1.34772 * 119.99730 * 125.22620 * 4 2 1 15 15 O 1.21281 * 119.99671 * 175.40065 * 14 4 2 16 16 C 1.50702 * 120.00054 * 355.39991 * 14 4 2 17 17 C 1.53016 * 109.46932 * 275.65771 * 16 14 4 18 18 C 1.52991 * 109.45840 * 164.04804 * 17 16 14 19 19 C 1.52977 * 109.51120 * 315.98729 * 18 17 16 20 20 C 1.53007 * 109.47211 * 112.93706 * 19 18 17 21 21 C 1.52997 * 109.42967 * 284.04492 * 20 19 18 22 22 C 1.52987 * 109.48750 * 75.96069 * 21 20 19 23 23 C 1.52991 * 109.50640 * 247.06282 * 22 21 20 24 24 H 1.09001 * 109.47283 * 300.00511 * 1 2 3 25 25 H 1.08999 * 109.46950 * 59.99726 * 1 2 3 26 26 H 1.08997 * 109.47655 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47327 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.46793 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46811 * 299.99579 * 3 2 1 30 30 H 1.08999 * 109.47169 * 60.00049 * 3 2 1 31 31 H 1.09005 * 109.46934 * 150.00173 * 5 4 2 32 32 H 1.09002 * 109.47778 * 30.00165 * 5 4 2 33 33 H 0.97004 * 119.99693 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47052 * 35.65478 * 16 14 4 35 35 H 1.09009 * 109.47356 * 284.04421 * 17 16 14 36 36 H 1.08993 * 109.47367 * 44.04881 * 17 16 14 37 37 H 1.09006 * 109.46344 * 195.97363 * 18 17 16 38 38 H 1.08994 * 109.46042 * 75.99969 * 18 17 16 39 39 H 1.09004 * 109.47416 * 352.93667 * 19 18 17 40 40 H 1.09004 * 109.46905 * 232.93787 * 19 18 17 41 41 H 1.09000 * 109.47691 * 164.05429 * 20 19 18 42 42 H 1.08998 * 109.47592 * 44.03068 * 20 19 18 43 43 H 1.09002 * 109.47224 * 315.95500 * 21 20 19 44 44 H 1.08999 * 109.46566 * 195.95935 * 21 20 19 45 45 H 1.08997 * 109.46674 * 127.05247 * 22 21 20 46 46 H 1.09001 * 109.46359 * 7.07464 * 22 21 20 47 47 H 1.09002 * 109.47246 * 284.01530 * 23 22 21 48 48 H 1.08998 * 109.47962 * 164.00460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5725 -0.2602 2.5237 6 6 2.5139 0.7904 3.0537 7 1 3.3595 1.1063 2.4608 8 6 2.2922 1.3528 4.2929 9 7 1.2623 0.9684 5.0147 10 14 3.4548 2.6607 4.9464 11 1 3.4631 3.8225 4.0214 12 1 2.9995 3.1013 6.2895 13 1 4.8256 2.0987 5.0476 14 6 2.8776 -1.7218 1.0754 15 8 3.3467 -2.2395 2.0668 16 6 3.2557 -2.2314 -0.2915 17 6 2.1993 -3.2274 -0.7746 18 6 2.3516 -3.4409 -2.2818 19 6 2.5636 -2.0912 -2.9701 20 6 3.9796 -2.0295 -3.5466 21 6 4.9802 -1.7910 -2.4140 22 6 5.1828 -3.0891 -1.6302 23 6 4.6166 -2.9269 -0.2182 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5651 -1.1155 3.1995 32 1 0.5673 0.1552 2.4525 33 1 1.1061 1.3644 5.8864 34 1 3.3120 -1.3951 -0.9883 35 1 2.3327 -4.1778 -0.2577 36 1 1.2052 -2.8345 -0.5618 37 1 1.4504 -3.9115 -2.6749 38 1 3.2101 -4.0847 -2.4725 39 1 2.4314 -1.2885 -2.2446 40 1 1.8381 -1.9762 -3.7755 41 1 4.0437 -1.2134 -4.2663 42 1 4.2110 -2.9715 -4.0436 43 1 4.5962 -1.0196 -1.7464 44 1 5.9329 -1.4673 -2.8332 45 1 6.2474 -3.3152 -1.5709 46 1 4.6662 -3.9040 -2.1373 47 1 5.3004 -2.3251 0.3806 48 1 4.4988 -3.9083 0.2411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086579696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = -49.067590 kcal Electronic energy + Delta-G solvation = -24578.989007 eV Core-core repulsion = 21440.453072 eV Total energy + Delta-G solvation = -3138.535934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29439 -37.97929 -35.93175 -33.06638 -32.75159 -32.55133 -30.74438 -28.08973 -26.76746 -26.30323 -25.84547 -23.09232 -21.84492 -21.43633 -20.69708 -19.50627 -17.87144 -17.01692 -16.38634 -15.66332 -14.89489 -14.69339 -14.29860 -14.12256 -14.07596 -13.89050 -13.48025 -13.23544 -13.21019 -12.77685 -12.35415 -12.24131 -11.90198 -11.76683 -11.59006 -11.40822 -11.23810 -11.18223 -11.02328 -10.95490 -10.85596 -10.78956 -10.75564 -10.45794 -10.45083 -10.24148 -9.93058 -9.88910 -9.63899 -9.49099 -8.62876 -8.36661 -7.55586 -5.98382 -4.01116 3.34182 3.38817 3.41524 3.54303 3.99690 4.48935 4.55446 4.79474 4.83426 5.07275 5.08283 5.11549 5.19624 5.24570 5.28473 5.34385 5.35746 5.56746 5.61137 5.62716 5.72423 5.79842 5.88382 5.93559 6.00726 6.02829 6.05344 6.08337 6.10051 6.14912 6.21907 6.29126 6.33162 6.38472 6.39606 6.41792 6.56574 6.59963 6.66858 6.98269 7.20089 7.52678 7.66569 7.98997 8.32153 8.56035 8.98510 9.22803 9.62823 11.09718 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.005364 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.063905 B = 5219.052396 C = 5469.174366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.161 4.161 4 N -0.593 5.593 5 C 0.245 3.755 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.506 3.494 15 O -0.543 6.543 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.098 4.098 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -5.427 -18.530 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.219 4.219 4 N -0.325 5.325 5 C 0.126 3.874 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.293 3.707 15 O -0.420 6.420 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.155 4.155 21 C -0.169 4.169 22 C -0.163 4.163 23 C -0.136 4.136 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.694 -5.656 -17.796 18.750 hybrid contribution 0.570 0.885 0.525 1.176 sum 2.264 -4.771 -17.272 18.061 Atomic orbital electron populations 1.22156 0.95582 1.01786 1.02466 1.21135 0.94223 0.93869 0.88386 1.22190 1.01152 0.96120 1.02396 1.48307 1.44595 1.31096 1.08458 1.19219 0.95020 0.95694 0.77440 1.21408 1.11111 1.20882 1.02095 0.92490 1.24922 0.95488 0.97192 0.96587 1.69925 1.28406 1.43141 1.12166 0.86630 0.81438 0.81776 0.77995 1.20329 1.21279 1.20284 1.20433 0.79312 0.80402 0.90554 1.90652 1.52916 1.58694 1.39776 1.21924 0.96659 1.00082 0.96209 1.21545 0.98249 0.99071 0.95576 1.21851 1.01851 0.97483 0.94941 1.21945 0.96682 0.98423 1.00068 1.21700 0.94907 1.01447 0.97425 1.21850 0.98972 0.98538 0.97493 1.21879 1.00480 0.97886 0.96055 1.21420 0.94969 1.01171 0.96065 0.91130 0.92385 0.92897 0.90323 0.92986 0.93280 0.89986 0.94372 0.94795 0.92824 0.87373 0.91447 0.91713 0.92251 0.90829 0.90643 0.92266 0.92377 0.91969 0.90899 0.92421 0.92367 0.91047 0.91581 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.06 37.16 0.34 -2.10 16 2 C 0.13 2.12 3.09 -67.92 -0.21 1.91 16 3 C -0.16 -2.68 8.61 37.16 0.32 -2.36 16 4 N -0.59 -12.55 2.39 -167.47 -0.40 -12.95 16 5 C 0.25 6.41 4.69 -5.20 -0.02 6.38 16 6 C -0.52 -14.54 7.85 -34.44 -0.27 -14.81 16 7 H 0.06 1.61 7.59 -52.49 -0.40 1.21 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 10 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.51 10.69 6.65 -10.99 -0.07 10.62 16 15 O -0.54 -14.03 15.82 5.56 0.09 -13.94 16 16 C -0.13 -1.95 1.16 -91.76 -0.11 -2.05 16 17 C -0.11 -1.39 4.89 -26.73 -0.13 -1.52 16 18 C -0.12 -1.24 5.48 -26.75 -0.15 -1.39 16 19 C -0.13 -1.28 5.47 -26.74 -0.15 -1.42 16 20 C -0.12 -1.05 5.59 -26.73 -0.15 -1.20 16 21 C -0.13 -1.36 5.47 -26.74 -0.15 -1.51 16 22 C -0.13 -1.38 5.48 -26.74 -0.15 -1.53 16 23 C -0.10 -1.43 4.49 -26.73 -0.12 -1.55 16 24 H 0.07 1.22 6.51 -51.93 -0.34 0.88 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.10 3.31 -51.93 -0.17 0.93 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.62 6.93 -51.93 -0.36 1.26 16 31 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 32 H 0.03 0.89 6.17 -51.93 -0.32 0.57 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.11 1.50 1.65 -51.93 -0.09 1.42 16 35 H 0.07 0.91 7.82 -51.92 -0.41 0.50 16 36 H 0.06 0.88 8.03 -51.93 -0.42 0.47 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.70 4.69 -51.93 -0.24 0.45 16 39 H 0.08 0.81 3.48 -51.93 -0.18 0.63 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 43 H 0.07 0.87 5.47 -51.93 -0.28 0.59 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.71 4.69 -51.93 -0.24 0.46 16 47 H 0.07 1.10 7.96 -51.93 -0.41 0.68 16 48 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -31.94 344.49 -8.50 -40.44 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.99 Total: 1.15 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.11 Total: -10.90 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.34 Total: -39.01 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.94 -8.50 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086579696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.627 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds