Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 C 1.52989 * 109.47597 * 120.00302 * 2 1 3 5 5 N 1.46510 * 109.47220 * 64.99889 * 4 2 1 6 6 C 1.46500 * 119.99980 * 270.00496 * 5 4 2 7 7 C 1.50700 * 109.46948 * 269.99503 * 6 5 4 8 8 H 1.08010 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00140 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99661 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99982 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46744 * 90.00668 * 11 9 7 13 13 H 1.48497 * 109.47383 * 210.00476 * 11 9 7 14 14 H 1.48498 * 109.47477 * 330.00663 * 11 9 7 15 15 C 1.34776 * 119.99948 * 89.99804 * 5 4 2 16 16 O 1.21274 * 119.99979 * 179.72845 * 15 5 4 17 17 C 1.50706 * 119.99903 * 0.02562 * 15 5 4 18 18 C 1.53000 * 117.49725 * 244.98544 * 17 15 5 19 19 C 1.53003 * 117.49904 * 359.97438 * 18 17 15 20 20 C 1.53002 * 117.49776 * 145.02280 * 18 17 15 21 21 C 1.52997 * 117.49688 * 176.32461 * 17 15 5 22 22 C 1.53003 * 117.50039 * 214.97769 * 21 17 15 23 23 C 1.52999 * 117.49979 * 359.97438 * 21 17 15 24 24 H 1.09009 * 109.46928 * 299.99390 * 1 2 3 25 25 H 1.09000 * 109.47871 * 59.99294 * 1 2 3 26 26 H 1.08998 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46983 * 240.00958 * 2 1 3 28 28 H 1.08996 * 109.47369 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46921 * 300.00713 * 3 2 1 30 30 H 1.09009 * 109.46736 * 60.00492 * 3 2 1 31 31 H 1.09002 * 109.47496 * 305.00331 * 4 2 1 32 32 H 1.09002 * 109.47630 * 184.99988 * 4 2 1 33 33 H 1.09004 * 109.47265 * 29.99403 * 6 5 4 34 34 H 1.08994 * 109.47362 * 149.99917 * 6 5 4 35 35 H 0.97003 * 119.99440 * 179.97438 * 10 9 7 36 36 H 1.08995 * 115.54955 * 30.65710 * 17 15 5 37 37 H 1.09002 * 109.46550 * 111.39576 * 19 18 17 38 38 H 1.08996 * 109.46786 * 231.38838 * 19 18 17 39 39 H 1.08994 * 109.46847 * 351.39408 * 19 18 17 40 40 H 1.09003 * 109.47176 * 8.60747 * 20 18 17 41 41 H 1.09002 * 109.47144 * 128.60319 * 20 18 17 42 42 H 1.08999 * 109.46743 * 248.60685 * 20 18 17 43 43 H 1.09002 * 109.46897 * 111.39231 * 22 21 17 44 44 H 1.08994 * 109.47508 * 231.39141 * 22 21 17 45 45 H 1.09001 * 109.46503 * 351.39556 * 22 21 17 46 46 H 1.08998 * 109.47085 * 59.22884 * 23 21 17 47 47 H 1.09005 * 109.47026 * 179.22694 * 23 21 17 48 48 H 1.08994 * 109.47448 * 299.22768 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5661 1.7611 7 6 0.5718 -2.9411 3.2073 8 1 1.5510 -2.8640 3.6565 9 6 -0.4980 -3.3815 3.9573 10 7 -1.6904 -3.4748 3.4104 11 14 -0.2535 -3.8470 5.7497 12 1 -0.4653 -2.6515 6.6049 13 1 -1.2284 -4.9026 6.1245 14 1 1.1275 -4.3568 5.9449 15 6 2.4715 -3.0331 0.6113 16 8 2.1530 -4.2024 0.5670 17 6 3.7863 -2.5875 0.0246 18 6 3.9666 -2.7228 -1.4887 19 6 2.7985 -3.3006 -2.2905 20 6 4.7886 -1.6469 -2.2012 21 6 4.7096 -3.6682 -0.5414 22 6 6.2174 -3.4648 -0.3798 23 6 4.2279 -5.1185 -0.4680 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6443 1.2950 33 1 -0.3484 -1.7533 1.6918 34 1 0.0043 -3.4298 1.2091 35 1 -2.4430 -3.7850 3.9380 36 1 4.2529 -1.7319 0.5125 37 1 2.3671 -2.5203 -2.9175 38 1 3.1574 -4.1151 -2.9196 39 1 2.0392 -3.6779 -1.6056 40 1 5.2608 -1.0008 -1.4611 41 1 5.5567 -2.1215 -2.8119 42 1 4.1341 -1.0520 -2.8381 43 1 6.6107 -4.2030 0.3191 44 1 6.7059 -3.5837 -1.3469 45 1 6.4097 -2.4628 0.0037 46 1 3.2867 -5.2166 -1.0090 47 1 4.9751 -5.7728 -0.9172 48 1 4.0786 -5.3995 0.5745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091491833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -33.685373 kcal Electronic energy + Delta-G solvation = -24294.450694 eV Core-core repulsion = 21156.581783 eV Total energy + Delta-G solvation = -3137.868912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28539 -37.72681 -36.08759 -33.46960 -32.24320 -30.98779 -28.70543 -28.40229 -27.08231 -26.77552 -26.05441 -25.30319 -23.27689 -20.82541 -20.08254 -17.84283 -17.56489 -16.57281 -16.25680 -15.45217 -14.90382 -14.46948 -14.41064 -14.16551 -13.93018 -13.53804 -13.20164 -12.76134 -12.67125 -12.46309 -12.28597 -12.23251 -12.04396 -12.01891 -11.88626 -11.72271 -11.55887 -11.51414 -11.35399 -11.23368 -10.92772 -10.87083 -10.61857 -10.52188 -10.40054 -10.22018 -10.05510 -9.53731 -9.46600 -9.23223 -8.52631 -8.38720 -7.52220 -6.00633 -4.04551 3.22234 3.31636 3.38392 3.43380 3.95251 4.08660 4.47727 4.81294 4.86236 4.91303 5.13687 5.19672 5.25415 5.30927 5.33336 5.38809 5.51929 5.61487 5.66639 5.77845 5.79995 5.83572 5.90281 5.93291 5.97536 6.03594 6.06330 6.10874 6.14632 6.19237 6.23413 6.24724 6.30118 6.34689 6.36959 6.50545 6.58352 6.64793 6.74858 6.93794 7.18151 7.49946 7.64961 7.96935 8.29595 8.54371 8.95890 9.22916 9.60516 11.07097 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.006266 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.101145 B = 4467.282931 C = 5506.219583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.118 3.882 5 N -0.592 5.592 6 C 0.244 3.756 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.537 3.463 16 O -0.536 6.536 17 C -0.176 4.176 18 C -0.098 4.098 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.093 4.093 22 C -0.112 4.112 23 C -0.105 4.105 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.015 7.135 -10.677 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.200 4.200 4 C -0.007 4.007 5 N -0.322 5.322 6 C 0.125 3.875 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.324 3.676 16 O -0.414 6.414 17 C -0.197 4.197 18 C -0.098 4.098 19 C -0.181 4.181 20 C -0.168 4.168 21 C -0.093 4.093 22 C -0.169 4.169 23 C -0.161 4.161 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.615 6.458 -10.630 17.018 hybrid contribution 0.031 -0.011 1.241 1.241 sum 11.647 6.447 -9.390 16.290 Atomic orbital electron populations 1.21923 0.94808 1.02971 1.00803 1.21556 0.96835 0.95636 0.99120 1.21770 1.00446 0.96184 1.01609 1.21513 0.98904 0.82528 0.97719 1.48143 1.21597 1.06243 1.56200 1.19362 0.78779 0.96242 0.93128 1.21468 0.94974 1.44153 0.95634 0.92634 1.24912 0.95084 0.95509 0.98563 1.69931 0.99796 1.47244 1.36501 0.86540 0.78027 0.78177 0.84938 1.20707 1.21135 1.19961 1.19317 0.84201 0.85754 0.78312 1.90647 1.74975 1.17154 1.58665 1.22861 0.97667 1.02204 0.96955 1.21599 0.99224 0.99735 0.89267 1.21466 0.96720 1.00173 0.99745 1.21333 0.98978 0.96689 0.99794 1.21645 0.92772 0.93138 1.01789 1.21321 0.92665 1.01504 1.01396 1.21357 1.00358 0.91297 1.03124 0.92648 0.93758 0.91330 0.91308 0.93048 0.92954 0.92637 0.90344 0.91873 0.94299 0.94178 0.92820 0.86937 0.92677 0.92274 0.90631 0.92506 0.92212 0.92253 0.92159 0.92241 0.92673 0.90823 0.94195 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.18 37.16 0.30 -2.00 16 2 C -0.11 -1.59 3.13 -90.62 -0.28 -1.87 16 3 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 4 C 0.12 1.97 4.73 -4.04 -0.02 1.95 16 5 N -0.59 -12.49 2.28 -175.06 -0.40 -12.89 16 6 C 0.24 6.31 4.23 -5.19 -0.02 6.29 16 7 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 11 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.54 11.16 6.18 -10.98 -0.07 11.09 16 16 O -0.54 -13.03 11.61 5.56 0.06 -12.96 16 17 C -0.18 -2.80 4.65 -91.77 -0.43 -3.23 16 18 C -0.10 -1.32 2.70 -154.47 -0.42 -1.73 16 19 C -0.12 -1.78 8.19 37.16 0.30 -1.48 16 20 C -0.11 -1.15 8.88 37.16 0.33 -0.82 16 21 C -0.09 -1.34 2.70 -154.47 -0.42 -1.76 16 22 C -0.11 -1.27 8.85 37.16 0.33 -0.94 16 23 C -0.10 -1.69 7.90 37.16 0.29 -1.39 16 24 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.27 5.89 -51.93 -0.31 0.97 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.06 0.93 5.94 -51.93 -0.31 0.62 16 33 H 0.04 1.01 5.98 -51.93 -0.31 0.70 16 34 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.11 1.63 6.12 -51.93 -0.32 1.31 16 37 H 0.05 0.70 7.93 -51.93 -0.41 0.29 16 38 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 39 H 0.07 1.35 5.16 -51.93 -0.27 1.08 16 40 H 0.06 0.55 7.78 -51.93 -0.40 0.14 16 41 H 0.06 0.55 8.02 -51.93 -0.42 0.14 16 42 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 43 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 44 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 45 H 0.05 0.58 7.77 -51.93 -0.40 0.17 16 46 H 0.07 1.30 5.04 -51.93 -0.26 1.04 16 47 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 48 H 0.07 1.24 7.40 -51.93 -0.38 0.86 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -31.22 366.03 -8.04 -39.26 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.76 Total: 0.67 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.17 Total: -10.74 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.34 Total: -38.84 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.96 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.22 -8.04 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091491833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.571 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds