Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 H 1.09001 * 109.47325 * 53.83989 * 3 2 1 5 5 C 1.50700 * 109.46983 * 173.83335 * 3 2 1 6 6 H 1.07999 * 119.99994 * 119.99424 * 5 3 2 7 7 C 1.37884 * 120.00282 * 300.00532 * 5 3 2 8 8 N 1.31513 * 120.00120 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99640 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46967 * 90.00516 * 9 7 5 11 11 H 1.48498 * 109.47045 * 210.00067 * 9 7 5 12 12 H 1.48496 * 109.47545 * 330.00541 * 9 7 5 13 13 N 1.46497 * 109.47188 * 293.83421 * 3 2 1 14 14 C 1.34776 * 119.99849 * 95.67003 * 13 3 2 15 15 O 1.21282 * 119.99865 * 354.54507 * 14 13 3 16 16 C 1.50699 * 120.00296 * 174.55101 * 14 13 3 17 17 C 1.52997 * 110.43586 * 60.84865 * 16 14 13 18 18 C 1.53000 * 109.47027 * 56.22802 * 17 16 14 19 19 C 1.53000 * 109.47220 * 68.05388 * 18 17 16 20 20 C 1.53001 * 109.47097 * 188.05420 * 18 17 16 21 21 C 1.54898 * 110.48361 * 298.16859 * 16 14 13 22 22 C 1.54890 * 102.74661 * 279.26185 * 21 16 14 23 23 C 1.54265 * 104.19736 * 322.05966 * 22 21 16 24 24 C 1.53873 * 106.59861 * 23.60722 * 23 22 21 25 25 H 1.08999 * 109.47166 * 176.13343 * 1 2 3 26 26 H 1.08996 * 109.47936 * 296.13580 * 1 2 3 27 27 H 1.09002 * 109.47382 * 56.13722 * 1 2 3 28 28 H 1.09003 * 109.46753 * 119.99687 * 2 1 3 29 29 H 1.08993 * 109.47237 * 239.99999 * 2 1 3 30 30 H 0.96994 * 119.99712 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99831 * 275.65982 * 13 3 2 32 32 H 1.08996 * 109.47257 * 176.22975 * 17 16 14 33 33 H 1.09000 * 109.47414 * 296.23023 * 17 16 14 34 34 H 1.08996 * 109.47066 * 308.04987 * 18 17 16 35 35 H 1.08997 * 109.46608 * 290.10743 * 19 18 17 36 36 H 1.09004 * 109.46688 * 50.10544 * 19 18 17 37 37 H 1.08988 * 109.47158 * 170.10486 * 19 18 17 38 38 H 1.08994 * 109.47252 * 59.99832 * 20 18 17 39 39 H 1.08997 * 109.47350 * 180.02562 * 20 18 17 40 40 H 1.09007 * 109.46956 * 300.00213 * 20 18 17 41 41 H 1.08997 * 110.75353 * 37.57677 * 21 16 14 42 42 H 1.08995 * 110.75535 * 160.94595 * 21 16 14 43 43 H 1.08996 * 110.48277 * 203.37674 * 22 21 16 44 44 H 1.09007 * 110.48380 * 80.73207 * 22 21 16 45 45 H 1.09001 * 110.03247 * 264.32702 * 23 22 21 46 46 H 1.08999 * 110.03560 * 142.89618 * 23 22 21 47 47 H 1.09003 * 110.03365 * 240.71645 * 24 23 22 48 48 H 1.09006 * 110.03424 * 119.28666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5893 1.9872 0.8297 5 6 3.5392 1.4454 0.1526 6 1 4.1593 1.8847 -0.6148 7 6 4.1193 0.8869 1.2719 8 7 5.4277 0.8890 1.4048 9 14 3.0468 0.1275 2.5994 10 1 2.8309 -1.3107 2.2987 11 1 3.7194 0.2623 3.9164 12 1 1.7374 0.8270 2.6384 13 7 1.6764 2.0890 -1.2634 14 6 0.5584 2.8377 -1.3400 15 8 -0.1981 2.8964 -0.3939 16 6 0.2483 3.6020 -2.6012 17 6 0.0937 2.6425 -3.7829 18 6 -0.9847 1.6061 -3.4607 19 6 -2.3506 2.2929 -3.4016 20 6 -1.0008 0.5314 -4.5496 21 6 1.3557 4.6463 -2.8885 22 6 0.9699 5.8194 -1.9535 23 6 -0.5713 5.8561 -2.0086 24 6 -1.0301 4.4463 -2.4205 25 1 -0.3633 -1.0253 -0.0693 26 1 -0.3635 0.4526 0.9225 27 1 -0.3634 0.5726 -0.8533 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 5.8357 0.4964 2.1924 31 1 2.2405 1.9782 -2.0447 32 1 -0.1957 3.2038 -4.6713 33 1 1.0413 2.1359 -3.9660 34 1 -0.7683 1.1441 -2.4975 35 1 -2.3988 2.9304 -2.5189 36 1 -2.4911 2.8996 -4.2962 37 1 -3.1348 1.5379 -3.3478 38 1 -0.0277 0.0422 -4.5916 39 1 -1.7693 -0.2067 -4.3203 40 1 -1.2171 0.9935 -5.5129 41 1 2.3370 4.2505 -2.6270 42 1 1.3299 4.9595 -3.9321 43 1 1.3874 6.7556 -2.3241 44 1 1.3107 5.6246 -0.9366 45 1 -0.9012 6.5867 -2.7471 46 1 -0.9741 6.1081 -1.0276 47 1 -1.5827 4.4927 -3.3589 48 1 -1.6556 4.0140 -1.6394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -65.092995 kcal Electronic energy + Delta-G solvation = -24652.442251 eV Core-core repulsion = 21513.211402 eV Total energy + Delta-G solvation = -3139.230848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43934 -37.37725 -35.56226 -35.10180 -32.39814 -31.64510 -29.93129 -28.90663 -27.39330 -26.82052 -25.09380 -23.04164 -22.09655 -20.49764 -19.97933 -19.81420 -18.89462 -16.91474 -16.17472 -15.83680 -15.51482 -15.07431 -14.49573 -14.19727 -13.84703 -13.72416 -13.49464 -13.11658 -12.97174 -12.66792 -12.45704 -12.19701 -12.00922 -11.91975 -11.85946 -11.70849 -11.28433 -11.14569 -11.09453 -10.95439 -10.85796 -10.67166 -10.50356 -10.40060 -10.35447 -10.16927 -10.01138 -9.87831 -9.50255 -9.25610 -8.88205 -8.70104 -7.98587 -6.18592 -4.20111 3.23721 3.35886 3.36539 3.41443 4.03074 4.33385 4.56969 4.75955 4.80235 4.99547 5.06452 5.14922 5.21089 5.41219 5.47144 5.57444 5.63354 5.64762 5.72344 5.79716 5.82550 5.84676 5.88911 5.96606 5.99465 5.99900 6.03202 6.09181 6.14440 6.15507 6.20473 6.26264 6.36317 6.39724 6.44043 6.47559 6.62729 6.69027 6.71494 6.86936 6.98259 7.28282 7.39029 7.58948 8.23177 8.60247 8.80648 9.05872 9.43356 10.93668 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.006322 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.228783 B = 4427.764772 C = 5111.841395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.241 3.759 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.701 5.701 14 C 0.524 3.476 15 O -0.551 6.551 16 C -0.084 4.084 17 C -0.097 4.097 18 C -0.105 4.105 19 C -0.162 4.162 20 C -0.144 4.144 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.266 0.734 31 H 0.392 0.608 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 4.582 -11.834 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.137 3.863 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.309 3.691 15 O -0.430 6.430 16 C -0.087 4.087 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.219 4.219 20 C -0.202 4.202 21 C -0.150 4.150 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.146 4.146 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.225 0.775 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.401 4.576 -11.012 17.204 hybrid contribution 0.002 -0.638 0.387 0.746 sum -12.399 3.938 -10.626 16.797 Atomic orbital electron populations 1.21872 0.97259 0.99266 1.02038 1.22268 0.94145 1.00216 1.01050 1.19131 0.95647 0.88539 0.82933 0.93010 1.21115 0.89012 1.39720 1.07205 0.90305 1.24843 0.94850 0.95207 0.97665 1.69870 1.09298 1.44860 1.29036 0.86926 0.81209 0.79861 0.80864 1.20322 1.22229 1.18489 1.46070 1.24169 1.49740 1.14800 1.20057 0.81400 0.79127 0.88515 1.90616 1.48433 1.64860 1.39118 1.21686 0.97306 0.95612 0.94124 1.21666 0.99228 0.96209 0.96381 1.21240 0.95368 0.95792 0.99917 1.22336 0.96121 1.00768 1.02641 1.21822 1.01675 0.98335 0.98346 1.22577 0.97882 0.94831 0.99718 1.22348 0.95721 0.97931 1.00287 1.22141 0.95803 0.97077 1.01076 1.22483 0.96352 0.93978 1.01788 0.94751 0.93243 0.92596 0.92827 0.92356 0.92379 0.77536 0.91226 0.91465 0.90371 0.90441 0.93087 0.93512 0.92663 0.92960 0.93031 0.90694 0.90901 0.91846 0.91327 0.92399 0.91964 0.91262 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.99 37.16 0.33 -2.57 16 2 C -0.14 -3.03 5.10 -26.73 -0.14 -3.17 16 3 C 0.24 5.66 1.78 -69.08 -0.12 5.54 16 4 H 0.05 1.37 6.39 -51.93 -0.33 1.03 16 5 C -0.53 -14.36 9.34 -34.44 -0.32 -14.68 16 6 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.88 21.90 24.42 -169.99 -4.15 17.75 16 10 H -0.28 -6.65 6.82 56.52 0.39 -6.26 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.70 -13.60 4.47 -54.93 -0.25 -13.85 16 14 C 0.52 9.51 3.79 -10.99 -0.04 9.46 16 15 O -0.55 -11.81 13.50 5.56 0.07 -11.73 16 16 C -0.08 -1.16 0.48 -154.00 -0.07 -1.23 16 17 C -0.10 -1.14 3.78 -26.73 -0.10 -1.24 16 18 C -0.10 -1.29 2.75 -90.62 -0.25 -1.54 16 19 C -0.16 -1.84 7.70 37.16 0.29 -1.56 16 20 C -0.14 -1.55 9.17 37.16 0.34 -1.21 16 21 C -0.11 -1.44 5.80 -24.73 -0.14 -1.58 16 22 C -0.13 -1.66 6.61 -25.07 -0.17 -1.82 16 23 C -0.12 -1.53 6.80 -25.61 -0.17 -1.70 16 24 C -0.11 -1.40 3.76 -25.62 -0.10 -1.50 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.06 3.91 -51.93 -0.20 0.86 16 28 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 6.89 8.03 -40.82 -0.33 6.56 16 32 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 33 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 34 H 0.08 1.19 4.71 -51.93 -0.24 0.94 16 35 H 0.08 0.97 4.48 -51.93 -0.23 0.74 16 36 H 0.05 0.50 7.57 -51.93 -0.39 0.11 16 37 H 0.05 0.51 8.11 -51.94 -0.42 0.09 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.05 7.66 -51.93 -0.40 0.65 16 42 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.76 6.17 -51.93 -0.32 0.44 16 48 H 0.09 1.31 5.23 -51.93 -0.27 1.04 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -29.94 345.08 -7.49 -37.42 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -8.38 Total: 7.72 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.76 Total: -16.72 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.53 Total: -39.64 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.94 -7.49 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.670 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds