Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 H 1.09007 * 109.46826 * 304.99984 * 3 2 1 5 5 C 1.50696 * 109.47438 * 184.99944 * 3 2 1 6 6 H 1.07996 * 119.99940 * 239.73091 * 5 3 2 7 7 C 1.37877 * 119.99720 * 59.99665 * 5 3 2 8 8 N 1.31513 * 120.00438 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99762 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47286 * 60.00301 * 9 7 5 11 11 H 1.48502 * 109.46998 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47335 * 300.00231 * 9 7 5 13 13 N 1.46505 * 109.47004 * 64.99398 * 3 2 1 14 14 C 1.34766 * 120.00383 * 275.00303 * 13 3 2 15 15 O 1.21288 * 120.00023 * 354.68083 * 14 13 3 16 16 C 1.50706 * 119.99925 * 174.68757 * 14 13 3 17 17 C 1.52998 * 110.43761 * 62.38123 * 16 14 13 18 18 C 1.52997 * 109.47325 * 52.74508 * 17 16 14 19 19 C 1.53000 * 109.47056 * 66.39294 * 18 17 16 20 20 C 1.52998 * 109.47127 * 186.39276 * 18 17 16 21 21 C 1.54886 * 110.48239 * 299.69055 * 16 14 13 22 22 C 1.54883 * 102.75372 * 279.26595 * 21 16 14 23 23 C 1.54266 * 104.19760 * 322.06011 * 22 21 16 24 24 C 1.53880 * 106.59729 * 23.60860 * 23 22 21 25 25 H 1.08996 * 109.47047 * 60.00256 * 1 2 3 26 26 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47377 * 300.00045 * 1 2 3 28 28 H 1.08996 * 109.47377 * 239.99955 * 2 1 3 29 29 H 1.08996 * 109.47047 * 119.99744 * 2 1 3 30 30 H 0.96995 * 120.00179 * 180.02562 * 8 7 5 31 31 H 0.97004 * 119.99378 * 95.00156 * 13 3 2 32 32 H 1.08998 * 109.47212 * 172.74901 * 17 16 14 33 33 H 1.09006 * 109.46563 * 292.74950 * 17 16 14 34 34 H 1.09001 * 109.47171 * 306.39453 * 18 17 16 35 35 H 1.09005 * 109.47197 * 50.12186 * 19 18 17 36 36 H 1.08994 * 109.47249 * 170.12509 * 19 18 17 37 37 H 1.09000 * 109.47255 * 290.12740 * 19 18 17 38 38 H 1.09001 * 109.47047 * 60.00372 * 20 18 17 39 39 H 1.09004 * 109.46999 * 180.02562 * 20 18 17 40 40 H 1.09001 * 109.47239 * 300.00135 * 20 18 17 41 41 H 1.08999 * 110.75853 * 37.58550 * 21 16 14 42 42 H 1.09005 * 110.75163 * 160.95009 * 21 16 14 43 43 H 1.08997 * 110.49109 * 203.38381 * 22 21 16 44 44 H 1.09004 * 110.48704 * 80.73611 * 22 21 16 45 45 H 1.09004 * 110.03255 * 264.32922 * 23 22 21 46 46 H 1.09001 * 110.03397 * 142.89193 * 23 22 21 47 47 H 1.08997 * 110.02978 * 240.71899 * 24 23 22 48 48 H 1.08999 * 110.03208 * 119.28314 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4445 -0.1238 6 1 4.1469 1.8930 0.6502 7 6 4.1432 0.8786 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8803 -1.3811 10 1 6.5967 0.1455 -0.2342 11 1 6.3979 0.2159 -2.6497 12 1 6.5004 2.2802 -1.3807 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3025 2.7177 0.4055 16 6 -0.0097 3.2321 2.6902 17 6 0.9070 4.3814 3.1137 18 6 1.0021 5.4027 1.9785 19 6 -0.3611 6.0667 1.7742 20 6 2.0398 6.4684 2.3369 21 6 -0.0333 2.1259 3.7741 22 6 -1.3808 1.4115 3.5044 23 6 -2.3454 2.5540 3.1250 24 6 -1.4737 3.7116 2.6072 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0609 -2.9498 31 1 2.2718 2.1232 1.9978 32 1 0.4992 4.8629 4.0024 33 1 1.9003 3.9910 3.3354 34 1 1.3018 4.8982 1.0599 35 1 -0.7411 6.4188 2.7333 36 1 -0.2556 6.9109 1.0930 37 1 -1.0578 5.3431 1.3510 38 1 3.0110 5.9954 2.4823 39 1 2.1073 7.1963 1.5283 40 1 1.7402 6.9730 3.2554 41 1 0.8018 1.4379 3.6422 42 1 -0.0209 2.5631 4.7725 43 1 -1.7286 0.9012 4.4025 44 1 -1.2805 0.7069 2.6787 45 1 -2.9085 2.8739 4.0017 46 1 -3.0281 2.2220 2.3428 47 1 -1.6138 4.5931 3.2328 48 1 -1.7334 3.9413 1.5738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -89.851102 kcal Electronic energy + Delta-G solvation = -24581.049753 eV Core-core repulsion = 21440.745313 eV Total energy + Delta-G solvation = -3140.304440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67550 -38.64577 -36.74807 -36.41068 -34.28420 -32.90078 -30.99356 -29.90808 -28.79709 -27.73651 -26.05697 -25.17418 -23.41862 -21.70870 -21.05957 -20.92791 -20.24572 -18.44081 -17.42220 -17.25158 -16.75622 -16.43612 -15.83670 -15.52843 -15.27855 -14.84196 -14.64788 -14.42443 -14.12842 -13.87703 -13.59002 -13.45145 -13.19938 -13.05742 -12.93090 -12.84756 -12.78415 -12.66009 -12.29564 -12.17738 -12.10517 -12.08521 -11.92500 -11.63764 -11.58099 -11.42435 -11.32588 -11.10896 -11.03750 -10.98995 -10.55945 -10.28091 -9.52688 -8.15688 -6.32893 1.42712 1.44519 1.52222 2.03616 2.36811 2.75243 3.13341 3.56055 3.74308 3.77209 4.06876 4.13469 4.19584 4.29928 4.46981 4.49400 4.54321 4.61044 4.66237 4.74372 4.75343 4.79476 4.85341 4.89735 4.92395 4.99555 5.02240 5.04452 5.08057 5.14957 5.18797 5.20666 5.27645 5.35314 5.37647 5.42446 5.45918 5.52255 5.53683 5.57587 5.65974 5.70470 5.82133 5.98056 6.19369 6.76445 7.12360 7.35141 7.72818 8.89345 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.006172 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.499570 B = 4535.461739 C = 5499.734907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.008 1.008 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.707 5.707 14 C 0.522 3.478 15 O -0.592 6.592 16 C -0.080 4.080 17 C -0.091 4.091 18 C -0.104 4.104 19 C -0.156 4.156 20 C -0.139 4.139 21 C -0.107 4.107 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.021 0.979 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.095 0.905 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 7.437 15.963 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.356 5.356 14 C 0.310 3.690 15 O -0.473 6.473 16 C -0.083 4.083 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.213 4.213 20 C -0.196 4.196 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.144 4.144 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.054 0.946 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.114 0.886 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.687 7.357 15.091 18.071 hybrid contribution 1.221 -0.348 -0.938 1.578 sum -5.466 7.009 14.153 16.712 Atomic orbital electron populations 1.21698 0.97161 0.99125 1.00246 1.21759 0.93609 0.99358 1.01070 1.18239 0.93331 0.88874 0.81669 0.98985 1.21557 0.91674 1.38615 1.06653 0.91347 1.25753 1.03170 0.94468 0.95024 1.70045 1.37063 1.38474 1.09846 0.85482 0.79354 0.78409 0.77606 1.18826 1.21174 1.19767 1.46205 1.15799 1.56451 1.17106 1.20838 0.81036 0.76582 0.90589 1.90609 1.55137 1.59775 1.41767 1.21724 0.97683 0.97065 0.91815 1.21693 0.99054 0.93609 0.98536 1.21125 0.96806 0.96705 0.97590 1.22234 0.96649 1.00129 1.02244 1.21773 0.98034 0.97912 1.01909 1.22620 0.97621 0.95695 0.98512 1.22398 0.95558 0.97626 1.01006 1.22154 0.97766 0.95225 1.00784 1.22451 0.91513 0.98778 1.01614 0.95962 0.93674 0.93237 0.91245 0.94186 0.92682 0.76862 0.87792 0.91229 0.95487 0.90302 0.93785 0.92429 0.93076 0.93429 0.90511 0.91910 0.87297 0.89361 0.94573 0.89320 0.93735 0.88628 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.59 71.98 0.62 -5.15 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.82 16 3 C 0.28 14.76 2.25 44.24 0.10 14.86 16 4 H -0.01 -0.49 7.51 -2.38 -0.02 -0.50 16 5 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -53.37 11.29 21.45 0.24 -53.13 16 9 Si 0.97 42.69 29.54 68.60 2.03 44.71 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.71 -29.59 4.68 -446.08 -2.09 -31.68 16 14 C 0.52 20.40 3.03 87.66 0.27 20.67 16 15 O -0.59 -28.40 13.00 -3.05 -0.04 -28.44 16 16 C -0.08 -2.17 0.47 -51.85 -0.02 -2.19 16 17 C -0.09 -2.07 3.82 30.59 0.12 -1.95 16 18 C -0.10 -2.79 2.70 -10.80 -0.03 -2.82 16 19 C -0.16 -3.81 7.75 71.98 0.56 -3.25 16 20 C -0.14 -3.10 9.18 71.98 0.66 -2.44 16 21 C -0.11 -2.41 5.80 31.88 0.18 -2.22 16 22 C -0.13 -3.07 6.61 31.67 0.21 -2.86 16 23 C -0.12 -2.82 6.80 31.32 0.21 -2.60 16 24 C -0.11 -2.69 3.84 31.32 0.12 -2.57 16 25 H 0.02 1.10 7.92 -2.39 -0.02 1.08 16 26 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.05 2.18 4.32 -2.39 -0.01 2.16 16 28 H 0.07 3.92 5.95 -2.39 -0.01 3.90 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.40 14.56 7.95 -92.71 -0.74 13.82 16 32 H 0.10 1.68 7.92 -2.39 -0.02 1.66 16 33 H 0.07 1.54 7.87 -2.38 -0.02 1.52 16 34 H 0.03 0.99 6.82 -2.39 -0.02 0.97 16 35 H 0.08 1.45 7.53 -2.38 -0.02 1.43 16 36 H 0.04 1.07 8.11 -2.39 -0.02 1.05 16 37 H 0.06 1.65 4.67 -2.39 -0.01 1.64 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.54 7.54 -2.39 -0.02 1.52 16 42 H 0.11 1.72 8.06 -2.38 -0.02 1.70 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.09 6.71 -2.38 -0.02 1.07 16 45 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.10 1.85 6.39 -2.39 -0.02 1.83 16 48 H 0.06 1.88 5.03 -2.39 -0.01 1.87 16 Total: -1.00 -66.69 351.62 4.16 -62.53 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.19 Total: 32.26 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.83 Total: -26.26 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.85 Total: -84.81 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.04 Total: -28.44 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -66.69 4.16 -62.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.318 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds