Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46831 * 2 1 4 4 N 1.46496 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00051 * 264.76517 * 4 3 2 6 6 H 1.08002 * 120.00013 * 138.85799 * 5 4 3 7 7 C 1.38941 * 120.00345 * 318.85844 * 5 4 3 8 8 N 1.31414 * 119.99993 * 341.82861 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 161.82312 * 7 5 4 10 10 H 1.48505 * 109.46796 * 90.00078 * 9 7 5 11 11 H 1.48496 * 109.47157 * 209.99932 * 9 7 5 12 12 H 1.48496 * 109.46845 * 330.00578 * 9 7 5 13 13 C 1.34783 * 120.00045 * 84.77159 * 4 3 2 14 14 O 1.21290 * 119.99814 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99644 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46873 * 180.02562 * 15 13 4 17 17 C 1.52999 * 109.46974 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.46974 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47122 * 64.99896 * 18 17 16 20 20 C 1.52993 * 109.47153 * 179.97438 * 19 18 17 21 21 C 1.53007 * 109.47092 * 300.00161 * 20 19 18 22 22 C 1.52995 * 109.47111 * 59.99859 * 21 20 19 23 23 C 1.52993 * 109.47258 * 300.00040 * 22 21 20 24 24 H 1.09003 * 109.46987 * 299.99628 * 1 2 3 25 25 H 1.08998 * 109.47396 * 59.99929 * 1 2 3 26 26 H 1.09004 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.08989 * 109.47114 * 240.00327 * 2 1 3 28 28 H 1.09004 * 109.47145 * 119.99421 * 2 1 3 29 29 H 1.09004 * 109.47284 * 59.99915 * 3 2 1 30 30 H 1.08998 * 109.47188 * 300.00198 * 3 2 1 31 31 H 0.97006 * 120.00466 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47289 * 60.00153 * 15 13 4 33 33 H 1.08997 * 109.47117 * 300.00315 * 15 13 4 34 34 H 1.08998 * 109.47329 * 60.00390 * 16 15 13 35 35 H 1.08997 * 109.47259 * 299.99925 * 16 15 13 36 36 H 1.08996 * 109.47342 * 59.99756 * 17 16 15 37 37 H 1.09006 * 109.47231 * 299.99851 * 17 16 15 38 38 H 1.08997 * 109.47152 * 304.99871 * 18 17 16 39 39 H 1.08997 * 109.47301 * 300.00035 * 19 18 17 40 40 H 1.09006 * 109.47138 * 60.00252 * 19 18 17 41 41 H 1.09005 * 109.47494 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47554 * 59.99989 * 20 19 18 43 43 H 1.08997 * 109.47014 * 299.99879 * 21 20 19 44 44 H 1.09004 * 109.46895 * 179.97438 * 21 20 19 45 45 H 1.08999 * 109.46972 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46936 * 60.00538 * 22 21 20 47 47 H 1.08997 * 109.47093 * 300.00118 * 23 22 21 48 48 H 1.09002 * 109.47465 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5511 1.1832 6 1 5.0699 0.9489 1.3548 7 6 3.7522 2.4358 2.1610 8 7 2.9268 3.4084 1.8452 9 14 4.3367 2.2427 3.9248 10 1 5.5811 3.0285 4.1226 11 1 3.2866 2.7369 4.8511 12 1 4.6071 0.8092 4.2024 13 6 4.1794 1.3361 -1.1615 14 8 5.3923 1.3356 -1.1609 15 6 3.4264 1.2164 -2.4614 16 6 4.4211 1.1097 -3.6190 17 6 3.6566 0.9888 -4.9388 18 6 4.6513 0.8815 -6.0963 19 6 5.4452 -0.4201 -5.9677 20 6 6.4394 -0.5277 -7.1255 21 6 5.6787 -0.5234 -8.4530 22 6 4.8849 0.7782 -8.5817 23 6 3.8907 0.8858 -7.4238 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 2.6214 4.0264 2.5278 32 1 2.7994 2.0970 -2.6005 33 1 2.8000 0.3246 -2.4376 34 1 5.0477 0.2288 -3.4797 35 1 5.0477 2.0012 -3.6429 36 1 3.0303 1.8699 -5.0779 37 1 3.0296 0.0974 -4.9152 38 1 5.3360 1.7291 -6.0668 39 1 5.9868 -0.4234 -5.0218 40 1 4.7605 -1.2678 -5.9973 41 1 7.0047 -1.4552 -7.0341 42 1 7.1242 0.3198 -7.0964 43 1 4.9940 -1.3709 -8.4822 44 1 6.3871 -0.5996 -9.2780 45 1 4.3433 0.7815 -9.5276 46 1 5.5697 1.6258 -8.5526 47 1 3.2060 0.0382 -7.4530 48 1 3.3248 1.8129 -7.5157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = -88.680351 kcal Electronic energy + Delta-G solvation = -22723.966952 eV Core-core repulsion = 19583.713279 eV Total energy + Delta-G solvation = -3140.253673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.00402 -38.40813 -35.32363 -34.31008 -32.75109 -31.16192 -30.87254 -30.55318 -26.75047 -25.61436 -24.28304 -22.86724 -22.01997 -20.92852 -20.36869 -19.74588 -18.55358 -16.75929 -15.81981 -15.49911 -15.31111 -14.70724 -14.36557 -14.24017 -14.20167 -13.93397 -13.72899 -13.32132 -12.83593 -12.74929 -12.58990 -12.22186 -11.95872 -11.70434 -11.62091 -11.36573 -11.25690 -11.14212 -11.08346 -11.06509 -10.90204 -10.74538 -10.55852 -10.40567 -10.35099 -10.29365 -10.13869 -9.96116 -9.89575 -9.76011 -8.85778 -8.26913 -7.33214 -6.25873 -3.93878 3.20929 3.28610 3.33735 4.03214 4.21431 4.59471 4.66550 4.72555 4.91939 5.05330 5.12674 5.18064 5.34265 5.38207 5.47109 5.48515 5.55347 5.60385 5.61081 5.64595 5.73775 5.75151 5.93208 5.94549 5.96937 5.97588 6.08696 6.09461 6.14683 6.16960 6.20952 6.23959 6.28908 6.38374 6.41514 6.47284 6.50506 6.51818 6.62609 6.75916 6.86109 6.96358 7.29257 7.63943 8.37538 8.60637 9.28215 9.49004 10.12641 10.79322 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.003404 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.242334 B = 8224.597920 C = 8833.040197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.111 3.889 4 N -0.446 5.446 5 C -0.308 4.308 6 H 0.086 0.914 7 C 0.038 3.962 8 N -0.873 5.873 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.462 3.538 14 O -0.582 6.582 15 C -0.135 4.135 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.266 0.734 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -6.016 -15.479 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.014 4.014 4 N -0.165 5.165 5 C -0.436 4.436 6 H 0.103 0.897 7 C -0.166 4.166 8 N -0.511 5.511 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.250 3.750 14 O -0.466 6.466 15 C -0.175 4.175 16 C -0.137 4.137 17 C -0.152 4.152 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.578 -5.850 -15.355 16.633 hybrid contribution 0.023 0.070 0.933 0.936 sum -2.554 -5.780 -14.422 15.746 Atomic orbital electron populations 1.21682 0.96427 1.00614 1.01533 1.21997 0.94805 0.99505 1.01662 1.21496 0.82438 0.94083 1.03353 1.43459 1.04332 1.63782 1.04951 1.19347 1.11819 1.21264 0.91160 0.89666 1.25399 0.97127 0.93628 1.00449 1.69931 1.33777 1.13553 1.33875 0.86121 0.78413 0.78827 0.82447 1.20329 1.20887 1.19453 1.20486 0.88122 0.81282 0.85076 1.90499 1.14309 1.54749 1.87047 1.21653 0.99058 1.02392 0.94419 1.21321 0.97529 1.02991 0.91902 1.21676 0.97740 1.01507 0.94287 1.21159 0.97102 0.98173 0.94027 1.21648 0.97931 0.97432 0.98464 1.21546 0.97986 1.01553 0.94704 1.21535 0.98871 0.97854 0.97371 1.21531 0.98219 0.97881 0.98073 1.21591 0.97664 1.01602 0.94303 0.92786 0.93172 0.93509 0.93129 0.91804 0.87973 0.93452 0.92404 0.90536 0.90751 0.91518 0.91742 0.92224 0.92320 0.91253 0.91216 0.92238 0.92319 0.92098 0.92225 0.92525 0.92455 0.92131 0.92179 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.55 6.17 -26.73 -0.16 -2.72 16 3 C 0.11 2.42 4.69 -4.04 -0.02 2.40 16 4 N -0.45 -11.48 2.50 -114.81 -0.29 -11.77 16 5 C -0.31 -8.71 8.84 -14.94 -0.13 -8.84 16 6 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 7 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 8 N -0.87 -24.00 11.61 55.50 0.64 -23.36 16 9 Si 0.92 20.98 29.59 -169.99 -5.03 15.95 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.46 11.52 7.59 -10.98 -0.08 11.44 16 14 O -0.58 -16.61 15.89 5.55 0.09 -16.52 16 15 C -0.13 -2.52 4.31 -27.88 -0.12 -2.64 16 16 C -0.10 -1.66 4.26 -26.73 -0.11 -1.77 16 17 C -0.11 -1.47 4.68 -26.73 -0.13 -1.59 16 18 C -0.09 -0.99 2.19 -90.62 -0.20 -1.19 16 19 C -0.12 -1.33 4.96 -26.73 -0.13 -1.47 16 20 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.12 -1.07 5.92 -26.74 -0.16 -1.22 16 23 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.87 6.59 -51.94 -0.34 0.53 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.10 2.47 5.76 -51.93 -0.30 2.17 16 30 H 0.05 0.96 6.66 -51.93 -0.35 0.61 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.08 1.37 7.41 -51.93 -0.38 0.98 16 33 H 0.07 1.25 6.54 -51.93 -0.34 0.92 16 34 H 0.07 1.17 6.52 -51.93 -0.34 0.83 16 35 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.90 6.56 -51.93 -0.34 0.55 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -30.65 366.99 -9.60 -40.24 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.12 Total: 2.17 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.42 Total: -12.24 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.36 Total: -35.13 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.65 -9.60 -40.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.436 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds