Wall clock time and date at job start Tue Mar 31 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47353 * 2 1 4 4 C 1.52997 * 109.47181 * 120.00338 * 2 1 3 5 5 C 1.53006 * 109.46977 * 174.99823 * 4 2 1 6 6 N 1.46497 * 109.46992 * 179.97438 * 5 4 2 7 7 C 1.46490 * 120.00322 * 269.99874 * 6 5 4 8 8 C 1.50700 * 109.47314 * 270.00006 * 7 6 5 9 9 H 1.07993 * 120.00043 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99981 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00113 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 120.00271 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47170 * 89.99576 * 12 10 8 14 14 H 1.48496 * 109.47246 * 209.99797 * 12 10 8 15 15 H 1.48501 * 109.46879 * 329.99281 * 12 10 8 16 16 C 1.34780 * 119.99566 * 90.00440 * 6 5 4 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 6 5 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 6 5 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 6 20 20 C 1.54267 * 110.03373 * 292.90976 * 19 18 16 21 21 C 1.54968 * 104.16137 * 217.13581 * 20 19 18 22 22 C 1.54884 * 102.77441 * 37.88396 * 21 20 19 23 23 C 1.53874 * 110.03593 * 175.68896 * 19 18 16 24 24 H 1.09006 * 109.46570 * 299.99591 * 1 2 3 25 25 H 1.09001 * 109.46896 * 59.99401 * 1 2 3 26 26 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47087 * 240.00504 * 2 1 3 28 28 H 1.09005 * 109.46612 * 60.00213 * 3 2 1 29 29 H 1.08995 * 109.47539 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47399 * 300.00914 * 3 2 1 31 31 H 1.09000 * 109.47241 * 55.00164 * 4 2 1 32 32 H 1.09002 * 109.47129 * 294.99697 * 4 2 1 33 33 H 1.09000 * 109.46856 * 60.00106 * 5 4 2 34 34 H 1.09000 * 109.46976 * 300.00431 * 5 4 2 35 35 H 1.09006 * 109.47028 * 30.00444 * 7 6 5 36 36 H 1.09002 * 109.47109 * 150.00022 * 7 6 5 37 37 H 0.96998 * 120.00299 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.47060 * 299.99722 * 18 16 6 39 39 H 1.09001 * 109.47380 * 59.99809 * 18 16 6 40 40 H 1.09004 * 110.01939 * 54.29365 * 19 18 16 41 41 H 1.09001 * 110.48609 * 335.77840 * 20 19 18 42 42 H 1.08999 * 110.49311 * 98.42344 * 20 19 18 43 43 H 1.08997 * 110.72048 * 279.57487 * 21 20 19 44 44 H 1.08993 * 110.92252 * 156.29196 * 21 20 19 45 45 H 1.09009 * 110.48779 * 203.40596 * 22 21 20 46 46 H 1.09001 * 110.59973 * 80.82109 * 22 21 20 47 47 H 1.09003 * 110.03243 * 238.56963 * 23 19 18 48 48 H 1.08996 * 110.02723 * 359.95243 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0533 -1.5212 2.3842 7 6 4.4018 -0.7532 3.5819 8 6 5.8557 -0.3613 3.5220 9 1 6.4596 -0.6547 2.6762 10 6 6.4147 0.3726 4.5467 11 7 7.6834 0.7150 4.4942 12 14 5.3699 0.8807 6.0095 13 1 5.4402 -0.1699 7.0567 14 1 5.8787 2.1628 6.5597 15 1 3.9604 1.0532 5.5751 16 6 4.1821 -2.8629 2.3828 17 8 3.8932 -3.4988 1.3913 18 6 4.6839 -3.5729 3.6137 19 6 4.7350 -5.0789 3.3486 20 6 3.3060 -5.6337 3.1756 21 6 3.3555 -7.0266 3.8531 22 6 4.2681 -6.7786 5.0796 23 6 5.3468 -5.8067 4.5584 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.6768 1.9563 0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6055 -1.7199 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 3.9995 0.1675 1.1420 34 1 3.8532 -1.3939 0.3000 35 1 3.7852 0.1444 3.6301 36 1 4.2260 -1.3627 4.4683 37 1 8.0767 1.2310 5.2152 38 1 5.6831 -3.2127 3.8589 39 1 4.0110 -3.3738 4.4478 40 1 5.3245 -5.2805 2.4542 41 1 2.5836 -4.9907 3.6783 42 1 3.0600 -5.7315 2.1182 43 1 3.7988 -7.7649 3.1849 44 1 2.3610 -7.3414 4.1689 45 1 4.7237 -7.7118 5.4112 46 1 3.7031 -6.3213 5.8919 47 1 6.2329 -6.3622 4.2510 48 1 5.6081 -5.0869 5.3341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:20 Heat of formation + Delta-G solvation = -80.973951 kcal Electronic energy + Delta-G solvation = -23274.671135 eV Core-core repulsion = 20134.751637 eV Total energy + Delta-G solvation = -3139.919498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.51012 -37.71718 -36.44614 -34.74639 -32.51371 -31.28706 -29.34564 -28.42114 -27.51261 -27.01806 -25.49528 -22.89393 -22.36906 -20.51439 -19.79799 -19.33802 -18.17128 -17.03836 -16.40150 -15.76700 -15.20848 -15.04553 -14.74486 -14.38756 -13.99837 -13.84694 -13.45342 -13.11243 -12.99490 -12.71788 -12.52736 -12.27263 -12.12828 -11.87269 -11.80478 -11.45241 -11.20686 -10.98253 -10.86840 -10.81493 -10.80648 -10.74650 -10.58902 -10.48795 -10.47269 -10.32220 -10.25191 -10.12935 -10.05425 -9.60832 -8.94724 -8.72237 -7.68692 -6.22187 -4.23599 3.16157 3.24492 3.25675 3.44323 3.89280 4.25676 4.81811 4.87470 4.97161 5.03426 5.07681 5.10441 5.12435 5.40044 5.51926 5.63557 5.65690 5.70012 5.75582 5.81227 5.84010 5.87060 5.89318 5.91866 5.97702 5.98905 6.07581 6.09834 6.11895 6.22512 6.26448 6.30618 6.33672 6.36435 6.45221 6.49163 6.53910 6.61331 6.61880 6.64637 6.72581 6.80800 7.39916 7.45833 8.17692 8.43922 8.83263 9.01743 9.37648 10.90522 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.006983 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.600187 B = 4009.054682 C = 6376.107738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.209 3.791 8 C -0.540 4.540 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.891 5.891 12 Si 0.870 3.130 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.518 3.482 17 O -0.569 6.569 18 C -0.132 4.132 19 C -0.074 4.074 20 C -0.110 4.110 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.123 4.123 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 -6.862 -1.807 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.323 5.323 7 C 0.088 3.912 8 C -0.578 4.578 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.529 5.529 12 Si 0.696 3.304 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.307 3.693 17 O -0.450 6.450 18 C -0.171 4.171 19 C -0.093 4.093 20 C -0.148 4.148 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.793 -7.054 -2.203 13.081 hybrid contribution -0.272 0.611 0.999 1.202 sum -11.065 -6.443 -1.204 12.861 Atomic orbital electron populations 1.21822 0.95621 1.01416 1.01312 1.21047 0.95315 0.96381 0.98528 1.21910 1.01758 0.95799 1.01271 1.21996 0.96696 1.00387 0.97491 1.21354 0.92701 0.97815 0.88529 1.47937 1.63292 1.06001 1.15053 1.19779 0.97002 0.91576 0.82876 1.21392 0.93436 1.35116 1.07850 0.90425 1.24878 0.94777 0.95158 0.97908 1.69893 1.11794 1.37967 1.33216 0.86943 0.81225 0.78789 0.83398 1.19832 1.20892 1.18897 1.20541 0.77021 0.82134 0.89558 1.90571 1.52489 1.66117 1.35859 1.21822 1.04151 0.94644 0.96508 1.21512 0.96760 0.93059 0.98000 1.22375 0.96407 0.95005 1.00988 1.22538 0.99029 0.97832 0.97051 1.22347 0.97203 0.98835 0.97738 1.22242 0.97951 0.98119 0.97781 0.92890 0.93035 0.92923 0.91251 0.92738 0.91973 0.93187 0.92015 0.92105 0.90316 0.91002 0.95036 0.95313 0.92382 0.87749 0.89798 0.90604 0.92362 0.91027 0.91882 0.92218 0.92251 0.91912 0.91979 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 3 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 4 C -0.13 -1.97 5.01 -26.73 -0.13 -2.10 16 5 C 0.12 2.18 5.16 -4.04 -0.02 2.16 16 6 N -0.59 -12.16 2.46 -175.06 -0.43 -12.59 16 7 C 0.21 4.61 4.03 -5.20 -0.02 4.59 16 8 C -0.54 -14.16 9.84 -34.44 -0.34 -14.50 16 9 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 10 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 12 Si 0.87 19.73 27.47 -169.99 -4.67 15.07 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 16 C 0.52 10.53 7.45 -10.98 -0.08 10.45 16 17 O -0.57 -12.34 14.36 5.56 0.08 -12.26 16 18 C -0.13 -2.35 3.38 -27.88 -0.09 -2.44 16 19 C -0.07 -1.17 2.55 -89.50 -0.23 -1.39 16 20 C -0.11 -1.61 5.40 -25.03 -0.14 -1.75 16 21 C -0.13 -1.52 6.91 -24.70 -0.17 -1.69 16 22 C -0.12 -1.44 6.83 -25.08 -0.17 -1.62 16 23 C -0.12 -1.65 6.46 -25.61 -0.17 -1.82 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 34 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 35 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.03 0.61 5.87 -51.93 -0.30 0.31 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 38 H 0.10 2.03 8.00 -51.93 -0.42 1.61 16 39 H 0.08 1.40 7.28 -51.93 -0.38 1.02 16 40 H 0.08 1.29 7.95 -51.93 -0.41 0.88 16 41 H 0.06 0.86 7.77 -51.93 -0.40 0.46 16 42 H 0.07 1.14 7.63 -51.93 -0.40 0.75 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -28.66 370.54 -9.14 -37.80 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -9.23 Total: 3.87 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.25 Total: -12.44 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.34 Total: -37.62 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.67 Total: 15.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.66 -9.14 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.175 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds