Wall clock time and date at job start Tue Mar 31 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46758 * 2 1 4 4 C 1.52999 * 109.47161 * 119.99829 * 2 1 3 5 5 C 1.52999 * 109.46846 * 175.00107 * 4 2 1 6 6 N 1.46505 * 109.46776 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00298 * 270.00155 * 6 5 4 8 8 C 1.50699 * 109.47372 * 263.73304 * 7 6 5 9 9 H 1.08001 * 119.99614 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00427 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99786 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00099 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47259 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46990 * 120.00058 * 12 10 8 15 15 H 1.48506 * 109.46833 * 239.99922 * 12 10 8 16 16 C 1.34777 * 119.99626 * 90.00480 * 6 5 4 17 17 O 1.21279 * 120.00191 * 4.72574 * 16 6 5 18 18 C 1.50699 * 119.99490 * 184.73140 * 16 6 5 19 19 C 1.53003 * 109.47529 * 75.96299 * 18 16 6 20 20 C 1.52998 * 109.47149 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47191 * 299.99759 * 20 19 18 22 22 C 1.52996 * 109.47073 * 60.00263 * 21 20 19 23 23 C 1.53000 * 109.46757 * 195.96025 * 18 16 6 24 24 H 1.08995 * 109.47620 * 299.99858 * 1 2 3 25 25 H 1.09005 * 109.46951 * 60.00250 * 1 2 3 26 26 H 1.09005 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47096 * 240.00180 * 2 1 3 28 28 H 1.08997 * 109.47007 * 299.99848 * 3 2 1 29 29 H 1.08995 * 109.46939 * 59.99725 * 3 2 1 30 30 H 1.08993 * 109.46386 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46444 * 55.00331 * 4 2 1 32 32 H 1.08997 * 109.47012 * 295.00362 * 4 2 1 33 33 H 1.08995 * 109.47004 * 60.00594 * 5 4 2 34 34 H 1.08997 * 109.47523 * 299.99942 * 5 4 2 35 35 H 1.09003 * 109.46959 * 23.72708 * 7 6 5 36 36 H 1.08992 * 109.47344 * 143.73072 * 7 6 5 37 37 H 0.97000 * 119.99735 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47458 * 315.95689 * 18 16 6 39 39 H 1.09000 * 109.46791 * 300.00166 * 19 18 16 40 40 H 1.09004 * 109.46898 * 59.99615 * 19 18 16 41 41 H 1.09007 * 109.46874 * 180.02562 * 20 19 18 42 42 H 1.08995 * 109.47190 * 60.00352 * 20 19 18 43 43 H 1.09004 * 109.47326 * 300.00374 * 21 20 19 44 44 H 1.09004 * 109.47228 * 180.02562 * 21 20 19 45 45 H 1.08997 * 109.47429 * 179.97438 * 22 21 20 46 46 H 1.09005 * 109.47330 * 59.99496 * 22 21 20 47 47 H 1.08996 * 109.47665 * 299.99642 * 23 18 16 48 48 H 1.09000 * 109.47210 * 60.00441 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1879 6 7 4.0533 -1.5210 2.3844 7 6 4.4017 -0.7528 3.5822 8 6 5.8860 -0.4929 3.5983 9 1 6.5077 -0.8634 2.7966 10 6 6.4503 0.2177 4.6363 11 7 5.6931 0.6692 5.6122 12 14 8.2904 0.5391 4.6564 13 1 8.9126 -0.0703 3.4537 14 1 8.5371 2.0035 4.6538 15 1 8.8843 -0.0608 5.8782 16 6 4.1821 -2.8626 2.3832 17 8 3.9762 -3.4906 1.3663 18 6 4.5819 -3.5822 3.6454 19 6 3.3842 -3.6499 4.5952 20 6 3.7901 -4.3811 5.8764 21 6 4.2477 -5.7996 5.5309 22 6 5.4453 -5.7320 4.5812 23 6 5.0399 -5.0007 3.3004 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6054 -1.7197 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1676 1.1421 34 1 3.8533 -1.3939 0.3002 35 1 3.8667 0.1969 3.5731 36 1 4.1223 -1.3187 4.4708 37 1 6.0902 1.1688 6.3427 38 1 5.3980 -3.0441 4.1276 39 1 3.0579 -2.6394 4.8409 40 1 2.5681 -4.1881 4.1130 41 1 2.9366 -4.4297 6.5528 42 1 4.6062 -3.8433 6.3587 43 1 3.4315 -6.3375 5.0486 44 1 4.5364 -6.3207 6.4438 45 1 5.7717 -6.7425 4.3354 46 1 6.2616 -5.1941 5.0635 47 1 4.2239 -5.5389 2.8183 48 1 5.8932 -4.9526 2.6238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:14 Heat of formation + Delta-G solvation = -88.586799 kcal Electronic energy + Delta-G solvation = -23705.284787 eV Core-core repulsion = 20565.035171 eV Total energy + Delta-G solvation = -3140.249616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63829 -37.38732 -36.30695 -34.68361 -32.53998 -30.91416 -30.33998 -28.89211 -27.06299 -26.80423 -23.91494 -23.10280 -22.20127 -21.79135 -19.72938 -19.46140 -18.08985 -16.65013 -16.07756 -15.63912 -14.99969 -14.77613 -14.39090 -14.27707 -13.87998 -13.71450 -13.56599 -13.31249 -12.76312 -12.50736 -12.24066 -12.19901 -12.07894 -11.86707 -11.74310 -11.55546 -11.39517 -11.09922 -10.90863 -10.86521 -10.77724 -10.65798 -10.56800 -10.44379 -10.33224 -10.18389 -10.03194 -9.92165 -9.73870 -9.59756 -8.79400 -8.52205 -7.62221 -6.17840 -4.24672 3.21047 3.29964 3.34254 3.51534 4.00736 4.34530 5.03590 5.08633 5.09478 5.13141 5.15408 5.16885 5.18936 5.55097 5.62819 5.65597 5.73211 5.74194 5.86418 5.87648 5.88028 5.91808 5.93580 6.00606 6.01749 6.03747 6.13003 6.25774 6.28204 6.34103 6.38556 6.41289 6.46441 6.51525 6.56499 6.56950 6.66213 6.70345 6.73595 6.83562 6.93489 7.26758 7.62141 7.78854 8.08906 8.41698 8.82527 9.12918 9.43348 10.88468 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.007256 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.776951 B = 3858.201335 C = 5858.279267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.126 4.126 5 C 0.117 3.883 6 N -0.597 5.597 7 C 0.234 3.766 8 C -0.536 4.536 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.523 3.477 17 O -0.579 6.579 18 C -0.106 4.106 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.096 4.096 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -5.113 -2.902 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.326 5.326 7 C 0.114 3.886 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.312 3.688 17 O -0.460 6.460 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.134 4.134 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.386 -5.295 -3.240 8.906 hybrid contribution 1.087 0.483 0.195 1.206 sum -5.299 -4.812 -3.045 7.779 Atomic orbital electron populations 1.21822 0.95622 1.01409 1.01323 1.21049 0.95330 0.96364 0.98525 1.21899 1.01621 0.95837 1.01279 1.21989 0.96653 1.00312 0.97542 1.21342 0.92816 0.97576 0.88879 1.48231 1.62828 1.06032 1.15516 1.19524 0.95734 0.91586 0.81771 1.21557 0.92905 1.35276 1.07716 0.92178 1.24919 0.98257 0.95269 0.95256 1.69933 1.35345 1.36772 1.10796 0.86514 0.85220 0.78077 0.78159 1.19673 1.20871 1.20792 1.20516 0.76204 0.82360 0.89748 1.90555 1.53455 1.67067 1.34958 1.21287 1.00515 0.96352 0.94498 1.21473 0.96536 1.01245 0.95044 1.21504 1.01128 0.95608 0.97138 1.21535 0.98091 0.97070 0.98810 1.21541 0.98047 0.99846 0.96220 1.21297 1.01175 0.94346 0.96588 0.92798 0.93093 0.92947 0.91382 0.93266 0.92631 0.92120 0.92201 0.91849 0.90610 0.91250 0.94798 0.93792 0.92635 0.87063 0.90764 0.92556 0.92281 0.91326 0.92386 0.92524 0.92407 0.91815 0.91741 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.25 2.92 -90.61 -0.26 -1.51 16 3 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 4 C -0.13 -2.04 5.01 -26.73 -0.13 -2.17 16 5 C 0.12 2.21 5.17 -4.04 -0.02 2.19 16 6 N -0.60 -12.69 2.47 -175.07 -0.43 -13.13 16 7 C 0.23 5.48 4.79 -5.20 -0.02 5.46 16 8 C -0.54 -13.86 8.57 -34.44 -0.30 -14.16 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 12 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.52 11.18 6.81 -10.99 -0.07 11.11 16 17 O -0.58 -13.41 15.56 5.56 0.09 -13.32 16 18 C -0.11 -1.99 1.69 -91.77 -0.15 -2.15 16 19 C -0.11 -1.77 4.93 -26.73 -0.13 -1.90 16 20 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 21 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 22 C -0.12 -1.67 5.92 -26.75 -0.16 -1.82 16 23 C -0.10 -1.61 4.62 -26.75 -0.12 -1.74 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.42 6.49 -51.93 -0.34 1.08 16 34 H 0.07 1.35 7.36 -51.93 -0.38 0.96 16 35 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 36 H 0.04 1.05 4.83 -51.93 -0.25 0.80 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 38 H 0.11 2.34 6.70 -51.93 -0.35 1.99 16 39 H 0.07 1.34 6.13 -51.93 -0.32 1.02 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -27.82 368.47 -9.32 -37.14 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -9.12 Total: 3.20 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.12 Total: -11.51 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.30 Total: -36.55 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.82 -9.32 -37.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.446 kcal (2) G-P(sol) polarization free energy of solvation -27.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds