Wall clock time and date at job start Tue Mar 31 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46758 * 2 1 4 4 C 1.52999 * 109.47161 * 119.99829 * 2 1 3 5 5 C 1.52999 * 109.46846 * 175.00107 * 4 2 1 6 6 N 1.46505 * 109.46776 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00298 * 270.00155 * 6 5 4 8 8 C 1.50699 * 109.47372 * 263.73304 * 7 6 5 9 9 H 1.08001 * 119.99614 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00427 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99786 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00099 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47259 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46990 * 120.00058 * 12 10 8 15 15 H 1.48506 * 109.46833 * 239.99922 * 12 10 8 16 16 C 1.34777 * 119.99626 * 90.00480 * 6 5 4 17 17 O 1.21279 * 120.00191 * 4.72574 * 16 6 5 18 18 C 1.50699 * 119.99490 * 184.73140 * 16 6 5 19 19 C 1.53003 * 109.47529 * 75.96299 * 18 16 6 20 20 C 1.52998 * 109.47149 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47191 * 299.99759 * 20 19 18 22 22 C 1.52996 * 109.47073 * 60.00263 * 21 20 19 23 23 C 1.53000 * 109.46757 * 195.96025 * 18 16 6 24 24 H 1.08995 * 109.47620 * 299.99858 * 1 2 3 25 25 H 1.09005 * 109.46951 * 60.00250 * 1 2 3 26 26 H 1.09005 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47096 * 240.00180 * 2 1 3 28 28 H 1.08997 * 109.47007 * 299.99848 * 3 2 1 29 29 H 1.08995 * 109.46939 * 59.99725 * 3 2 1 30 30 H 1.08993 * 109.46386 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46444 * 55.00331 * 4 2 1 32 32 H 1.08997 * 109.47012 * 295.00362 * 4 2 1 33 33 H 1.08995 * 109.47004 * 60.00594 * 5 4 2 34 34 H 1.08997 * 109.47523 * 299.99942 * 5 4 2 35 35 H 1.09003 * 109.46959 * 23.72708 * 7 6 5 36 36 H 1.08992 * 109.47344 * 143.73072 * 7 6 5 37 37 H 0.97000 * 119.99735 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47458 * 315.95689 * 18 16 6 39 39 H 1.09000 * 109.46791 * 300.00166 * 19 18 16 40 40 H 1.09004 * 109.46898 * 59.99615 * 19 18 16 41 41 H 1.09007 * 109.46874 * 180.02562 * 20 19 18 42 42 H 1.08995 * 109.47190 * 60.00352 * 20 19 18 43 43 H 1.09004 * 109.47326 * 300.00374 * 21 20 19 44 44 H 1.09004 * 109.47228 * 180.02562 * 21 20 19 45 45 H 1.08997 * 109.47429 * 179.97438 * 22 21 20 46 46 H 1.09005 * 109.47330 * 59.99496 * 22 21 20 47 47 H 1.08996 * 109.47665 * 299.99642 * 23 18 16 48 48 H 1.09000 * 109.47210 * 60.00441 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1879 6 7 4.0533 -1.5210 2.3844 7 6 4.4017 -0.7528 3.5822 8 6 5.8860 -0.4929 3.5983 9 1 6.5077 -0.8634 2.7966 10 6 6.4503 0.2177 4.6363 11 7 5.6931 0.6692 5.6122 12 14 8.2904 0.5391 4.6564 13 1 8.9126 -0.0703 3.4537 14 1 8.5371 2.0035 4.6538 15 1 8.8843 -0.0608 5.8782 16 6 4.1821 -2.8626 2.3832 17 8 3.9762 -3.4906 1.3663 18 6 4.5819 -3.5822 3.6454 19 6 3.3842 -3.6499 4.5952 20 6 3.7901 -4.3811 5.8764 21 6 4.2477 -5.7996 5.5309 22 6 5.4453 -5.7320 4.5812 23 6 5.0399 -5.0007 3.3004 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6054 -1.7197 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1676 1.1421 34 1 3.8533 -1.3939 0.3002 35 1 3.8667 0.1969 3.5731 36 1 4.1223 -1.3187 4.4708 37 1 6.0902 1.1688 6.3427 38 1 5.3980 -3.0441 4.1276 39 1 3.0579 -2.6394 4.8409 40 1 2.5681 -4.1881 4.1130 41 1 2.9366 -4.4297 6.5528 42 1 4.6062 -3.8433 6.3587 43 1 3.4315 -6.3375 5.0486 44 1 4.5364 -6.3207 6.4438 45 1 5.7717 -6.7425 4.3354 46 1 6.2616 -5.1941 5.0635 47 1 4.2239 -5.5389 2.8183 48 1 5.8932 -4.9526 2.6238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:14 Heat of formation + Delta-G solvation = -100.639518 kcal Electronic energy + Delta-G solvation = -23705.807432 eV Core-core repulsion = 20565.035171 eV Total energy + Delta-G solvation = -3140.772261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27024 -38.72645 -37.67706 -36.38714 -34.48949 -32.27091 -31.61673 -30.39408 -28.72432 -28.00230 -25.35348 -24.97098 -23.52112 -23.15048 -20.89518 -20.76239 -19.76462 -18.62688 -17.80069 -17.27978 -16.41436 -16.28724 -16.04407 -15.73848 -15.01849 -14.99782 -14.92610 -14.58454 -14.39386 -14.02430 -13.76504 -13.71609 -13.33648 -13.17042 -13.07478 -12.98492 -12.88894 -12.71796 -12.60819 -12.31873 -12.20045 -12.03855 -11.93840 -11.82229 -11.63535 -11.57566 -11.47116 -11.39859 -11.29612 -10.96226 -10.65433 -10.36476 -9.41754 -8.20898 -6.35027 1.37660 1.41220 1.51320 1.78480 2.31093 2.45643 3.08608 3.65231 3.82742 3.86586 3.90874 3.97510 4.06367 4.20515 4.34803 4.35966 4.41210 4.56812 4.57814 4.60458 4.64269 4.66089 4.74336 4.76328 4.82237 4.90500 4.93178 5.00556 5.02551 5.08232 5.10827 5.14345 5.21746 5.23866 5.29196 5.30747 5.31722 5.38501 5.44112 5.45950 5.50103 5.60103 5.66875 5.88968 6.07744 6.56782 6.82540 7.31180 7.42996 8.84383 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.007256 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.776951 B = 3858.201335 C = 5858.279267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.114 4.114 5 C 0.114 3.886 6 N -0.600 5.600 7 C 0.251 3.749 8 C -0.547 4.547 9 H 0.045 0.955 10 C 0.027 3.973 11 N -0.915 5.915 12 Si 0.951 3.049 13 H -0.275 1.275 14 H -0.277 1.277 15 H -0.274 1.274 16 C 0.515 3.485 17 O -0.599 6.599 18 C -0.102 4.102 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.092 4.092 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.018 0.982 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -5.783 -2.619 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.008 4.008 6 N -0.330 5.330 7 C 0.131 3.869 8 C -0.585 4.585 9 H 0.063 0.937 10 C -0.174 4.174 11 N -0.553 5.553 12 Si 0.777 3.223 13 H -0.200 1.200 14 H -0.203 1.203 15 H -0.200 1.200 16 C 0.305 3.695 17 O -0.482 6.482 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.130 4.130 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.639 -5.959 -2.961 9.400 hybrid contribution 1.155 0.717 0.060 1.360 sum -5.484 -5.243 -2.901 8.123 Atomic orbital electron populations 1.21786 0.93843 1.01779 1.02363 1.21043 0.96780 0.96355 0.96783 1.21878 1.00810 0.95502 1.02227 1.21870 0.94402 1.00010 0.98992 1.21480 0.94744 0.96977 0.87643 1.48280 1.62827 1.06254 1.15591 1.19176 0.94414 0.90862 0.82488 1.21664 0.93857 1.35527 1.07482 0.93656 1.25564 1.02044 0.94946 0.94848 1.70006 1.36935 1.37164 1.11244 0.85609 0.80563 0.78049 0.78105 1.19979 1.20261 1.19952 1.21023 0.75725 0.82311 0.90414 1.90529 1.54532 1.67306 1.35840 1.21289 1.00528 0.97063 0.93472 1.21434 0.95742 1.00717 0.95891 1.21500 1.01455 0.96257 0.95869 1.21528 0.97802 0.96042 0.99635 1.21539 0.98430 1.00512 0.94774 1.21280 1.00477 0.93192 0.98038 0.92690 0.91126 0.92950 0.91229 0.91060 0.92930 0.93379 0.93313 0.92500 0.90811 0.91988 0.96390 0.94233 0.92268 0.89517 0.92663 0.91867 0.90281 0.92744 0.91368 0.90097 0.90043 0.92426 0.91891 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.19 71.98 0.66 -2.37 16 2 C -0.09 -2.35 2.92 -10.79 -0.03 -2.38 16 3 C -0.15 -3.60 8.95 71.99 0.64 -2.96 16 4 C -0.11 -3.75 5.01 30.59 0.15 -3.59 16 5 C 0.11 4.45 5.17 86.38 0.45 4.89 16 6 N -0.60 -26.50 2.47 -826.17 -2.04 -28.55 16 7 C 0.25 12.22 4.79 85.63 0.41 12.63 16 8 C -0.55 -28.99 8.57 25.60 0.22 -28.77 16 9 H 0.05 2.50 7.81 -2.91 -0.02 2.47 16 10 C 0.03 1.41 5.46 84.65 0.46 1.87 16 11 N -0.91 -49.95 13.29 21.45 0.28 -49.66 16 12 Si 0.95 42.10 29.54 68.60 2.03 44.13 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 C 0.52 22.70 6.81 87.66 0.60 23.29 16 17 O -0.60 -28.35 15.56 -3.03 -0.05 -28.39 16 18 C -0.10 -3.95 1.69 -11.54 -0.02 -3.97 16 19 C -0.10 -3.37 4.93 30.59 0.15 -3.22 16 20 C -0.11 -3.14 5.92 30.59 0.18 -2.95 16 21 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 22 C -0.12 -3.02 5.92 30.58 0.18 -2.84 16 23 C -0.09 -3.07 4.62 30.58 0.14 -2.92 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.28 6.56 -2.39 -0.02 1.27 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.86 6.49 -2.39 -0.02 2.85 16 34 H 0.06 2.49 7.36 -2.39 -0.02 2.47 16 35 H 0.02 0.93 8.02 -2.39 -0.02 0.91 16 36 H 0.04 1.97 4.83 -2.39 -0.01 1.96 16 37 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.09 3.78 6.70 -2.39 -0.02 3.76 16 39 H 0.05 2.05 6.13 -2.39 -0.01 2.03 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.06 1.58 8.14 -2.38 -0.02 1.57 16 47 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -59.60 368.47 5.49 -54.11 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.89 Total: 24.10 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 4.38 Total: -15.73 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.76 Total: -78.21 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.39 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -59.60 5.49 -54.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.529 kcal (2) G-P(sol) polarization free energy of solvation -59.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds