Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46937 * 2 1 4 4 H 1.09002 * 109.47026 * 176.79371 * 3 2 1 5 5 C 1.53001 * 109.47213 * 296.78829 * 3 2 1 6 6 C 1.50699 * 109.47327 * 293.65118 * 5 3 2 7 7 O 1.21280 * 119.99999 * 353.67880 * 6 5 3 8 8 N 1.34774 * 120.00035 * 173.67499 * 6 5 3 9 9 C 1.46504 * 120.00115 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46946 * 270.00239 * 9 8 6 11 11 H 1.07997 * 120.00207 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99726 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99901 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00299 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46921 * 90.00180 * 14 12 10 16 16 H 1.48498 * 109.47350 * 209.99913 * 14 12 10 17 17 H 1.48495 * 109.47290 * 330.00077 * 14 12 10 18 18 C 1.46505 * 120.00411 * 0.02562 * 8 6 5 19 19 C 1.52999 * 109.47031 * 89.99840 * 18 8 6 20 20 C 1.53003 * 117.49711 * 243.62705 * 19 18 8 21 21 C 1.52996 * 117.50081 * 175.00522 * 19 18 8 22 22 C 1.52991 * 109.47662 * 56.79448 * 3 2 1 23 23 C 1.52995 * 109.47548 * 59.99635 * 22 3 2 24 24 C 1.53005 * 109.47700 * 180.02562 * 22 3 2 25 25 H 1.09003 * 109.47242 * 299.84464 * 1 2 3 26 26 H 1.09001 * 109.46837 * 59.83931 * 1 2 3 27 27 H 1.08999 * 109.47040 * 179.84294 * 1 2 3 28 28 H 1.08993 * 109.47033 * 239.99718 * 2 1 3 29 29 H 1.09000 * 109.46678 * 119.99578 * 2 1 3 30 30 H 1.08999 * 109.47552 * 173.64964 * 5 3 2 31 31 H 1.09003 * 109.47189 * 53.64961 * 5 3 2 32 32 H 1.09001 * 109.47138 * 29.99805 * 9 8 6 33 33 H 1.09000 * 109.47070 * 149.99730 * 9 8 6 34 34 H 0.97002 * 120.00492 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.46496 * 330.00357 * 18 8 6 36 36 H 1.08993 * 109.47247 * 210.00362 * 18 8 6 37 37 H 1.08995 * 115.55132 * 29.33101 * 19 18 8 38 38 H 1.08996 * 117.50083 * 0.02562 * 20 19 18 39 39 H 1.09005 * 117.49859 * 145.01700 * 20 19 18 40 40 H 1.08994 * 117.49986 * 214.98053 * 21 19 18 41 41 H 1.09005 * 117.49536 * 0.02562 * 21 19 18 42 42 H 1.09003 * 109.47037 * 299.99526 * 22 3 2 43 43 H 1.09003 * 109.47040 * 59.99893 * 23 22 3 44 44 H 1.08997 * 109.47508 * 180.02562 * 23 22 3 45 45 H 1.09006 * 109.47288 * 300.00427 * 23 22 3 46 46 H 1.09004 * 109.46923 * 59.99077 * 24 22 3 47 47 H 1.08997 * 109.47383 * 179.97438 * 24 22 3 48 48 H 1.09003 * 109.46350 * 299.99777 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 0.0575 5 6 1.5971 2.1400 -1.2877 6 6 2.2871 1.5037 -2.4667 7 8 3.1417 0.6621 -2.2873 8 7 1.9545 1.8699 -3.7203 9 6 2.6249 1.2510 -4.8665 10 6 3.8484 2.0539 -5.2265 11 1 4.1010 2.9371 -4.6587 12 6 4.6452 1.6609 -6.2808 13 7 5.7126 2.3618 -6.5954 14 14 4.2086 0.1328 -7.2626 15 1 3.3238 0.5079 -8.3948 16 1 5.4502 -0.4885 -7.7895 17 1 3.5048 -0.8357 -6.3841 18 6 0.9225 2.8870 -3.9371 19 6 1.5720 4.2717 -3.9790 20 6 1.1828 5.2679 -2.8849 21 6 0.6733 5.4636 -4.3142 22 6 1.4653 2.1867 1.2068 23 6 1.9082 1.4892 2.4945 24 6 1.9748 3.6294 1.2065 25 1 -0.3634 0.5114 0.8914 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0277 -0.0028 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8618 3.1962 -1.2384 31 1 0.5175 2.0410 -1.4017 32 1 2.9207 0.2340 -4.6088 33 1 1.9431 1.2266 -5.7166 34 1 6.2730 2.0856 -7.3373 35 1 0.1990 2.8496 -3.1227 36 1 0.4156 2.6946 -4.8826 37 1 2.5993 4.2982 -4.3420 38 1 0.4645 4.9367 -2.1350 39 1 1.9544 5.9500 -2.5278 40 1 1.1095 6.2745 -4.8974 41 1 -0.3808 5.2614 -4.5044 42 1 0.3768 2.1862 1.1493 43 1 2.9968 1.4897 2.5520 44 1 1.4984 2.0192 3.3543 45 1 1.5449 0.4615 2.4946 46 1 1.6588 4.1261 0.2891 47 1 1.5649 4.1597 2.0661 48 1 3.0633 3.6302 1.2638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104414216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -35.590023 kcal Electronic energy + Delta-G solvation = -23818.500680 eV Core-core repulsion = 20680.549177 eV Total energy + Delta-G solvation = -3137.951503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71236 -37.73262 -36.85769 -34.39163 -32.49579 -32.30491 -30.13671 -28.23686 -26.93636 -26.28770 -24.79086 -22.48500 -22.13455 -21.75805 -20.49845 -18.91798 -18.10994 -16.86507 -16.55010 -15.71565 -15.35824 -15.04629 -14.80699 -14.38300 -13.93297 -13.81746 -13.48005 -13.25797 -12.78614 -12.59160 -12.49667 -12.32589 -12.15954 -12.12677 -11.76061 -11.63427 -11.40952 -11.31495 -11.29572 -11.17420 -10.94154 -10.73872 -10.52665 -10.28187 -10.13723 -10.09163 -10.02405 -10.00196 -9.64747 -9.40582 -8.81775 -8.55783 -7.66627 -6.05515 -4.03221 3.28709 3.36985 3.41403 3.44353 3.84956 4.13567 4.42528 4.79360 4.87193 4.93486 5.03740 5.13157 5.20518 5.22548 5.28424 5.38204 5.46203 5.48560 5.51604 5.63122 5.66493 5.69320 5.76660 5.79973 5.81656 5.87150 5.96918 5.97399 6.00887 6.08839 6.11440 6.15278 6.16649 6.23606 6.32244 6.33861 6.46849 6.62718 6.70892 6.72167 6.82337 7.03011 7.41443 7.65543 8.33651 8.51153 8.97331 9.08991 9.55571 11.07740 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.005574 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.246361 B = 5022.483372 C = 5929.409332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.066 4.066 4 H 0.079 0.921 5 C -0.141 4.141 6 C 0.511 3.489 7 O -0.539 6.539 8 N -0.594 5.594 9 C 0.215 3.785 10 C -0.522 4.522 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.873 3.127 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.264 1.264 18 C 0.147 3.853 19 C -0.161 4.161 20 C -0.188 4.188 21 C -0.179 4.179 22 C -0.093 4.093 23 C -0.147 4.147 24 C -0.152 4.152 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 2.378 13.053 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.085 4.085 4 H 0.098 0.902 5 C -0.181 4.181 6 C 0.299 3.701 7 O -0.416 6.416 8 N -0.325 5.325 9 C 0.094 3.906 10 C -0.560 4.560 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.189 1.189 18 C 0.023 3.977 19 C -0.180 4.180 20 C -0.225 4.225 21 C -0.217 4.217 22 C -0.111 4.111 23 C -0.204 4.204 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.135 1.908 13.001 18.579 hybrid contribution -0.055 -0.475 -0.787 0.921 sum -13.190 1.432 12.214 18.033 Atomic orbital electron populations 1.21899 0.96803 1.01040 1.01391 1.21627 0.95048 0.96616 1.02884 1.20946 1.01180 0.94353 0.92018 0.90244 1.21935 1.00926 1.01555 0.93681 1.20386 0.83035 0.82716 0.83961 1.90637 1.32475 1.33443 1.85080 1.47900 1.38594 1.39229 1.06790 1.19662 0.92883 0.94996 0.83024 1.21339 1.07583 1.12052 1.15056 0.90621 1.24855 0.94693 0.96501 0.97009 1.69894 1.15256 1.39417 1.29210 0.86888 0.78298 0.84198 0.80603 1.20201 1.21058 1.18901 1.20995 0.89366 0.85991 1.01373 1.23070 1.01948 0.90482 1.02493 1.23021 1.03541 1.03991 0.91916 1.22865 0.99418 1.01027 0.98397 1.21192 1.00268 0.94892 0.94794 1.21868 1.01451 1.00473 0.96653 1.21937 1.01469 0.96056 1.01432 0.92773 0.92895 0.93349 0.90389 0.92258 0.88780 0.89884 0.94212 0.95937 0.92672 0.91507 0.90475 0.85612 0.89268 0.89243 0.89039 0.89221 0.91140 0.92708 0.93220 0.92419 0.92276 0.93142 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.20 37.16 0.34 -1.38 16 2 C -0.12 -1.68 5.06 -26.73 -0.14 -1.82 16 3 C -0.07 -0.90 1.39 -90.63 -0.13 -1.03 16 4 H 0.08 1.28 7.81 -51.93 -0.41 0.88 16 5 C -0.14 -2.05 3.58 -27.88 -0.10 -2.15 16 6 C 0.51 10.21 7.25 -10.99 -0.08 10.13 16 7 O -0.54 -12.96 13.90 5.56 0.08 -12.89 16 8 N -0.59 -12.02 2.46 -175.05 -0.43 -12.45 16 9 C 0.22 5.23 4.27 -5.19 -0.02 5.21 16 10 C -0.52 -14.79 9.58 -34.44 -0.33 -15.12 16 11 H 0.08 2.34 6.90 -52.49 -0.36 1.97 16 12 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 14 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 18 C 0.15 2.32 5.56 -4.04 -0.02 2.29 16 19 C -0.16 -2.55 6.01 -90.62 -0.54 -3.10 16 20 C -0.19 -2.37 9.44 -26.73 -0.25 -2.62 16 21 C -0.18 -2.29 10.25 -26.73 -0.27 -2.57 16 22 C -0.09 -0.99 2.07 -90.62 -0.19 -1.18 16 23 C -0.15 -1.45 8.84 37.15 0.33 -1.12 16 24 C -0.15 -1.56 8.85 37.16 0.33 -1.24 16 25 H 0.05 0.52 6.38 -51.93 -0.33 0.19 16 26 H 0.05 0.60 6.37 -51.93 -0.33 0.27 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.31 6.25 -51.93 -0.32 0.99 16 29 H 0.06 0.74 6.61 -51.93 -0.34 0.40 16 30 H 0.09 1.30 5.36 -51.93 -0.28 1.03 16 31 H 0.08 1.03 5.13 -51.93 -0.27 0.76 16 32 H 0.04 1.05 6.48 -51.93 -0.34 0.72 16 33 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 0.85 6.00 -51.93 -0.31 0.54 16 36 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 37 H 0.13 2.57 6.57 -51.93 -0.34 2.22 16 38 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.70 6.37 -51.93 -0.33 0.37 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.55 6.50 -51.93 -0.34 0.22 16 46 H 0.06 0.61 6.29 -51.93 -0.33 0.28 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -32.08 361.09 -8.36 -40.44 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.38 Total: 3.10 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.17 Total: -13.71 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.34 Total: -39.39 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.08 -8.36 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104414216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.854 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds